RNA–Protein interactions for RNA: ENST00000507162.1

VCAN-207, Transcript of versican, humanhuman

TSL 3

Gene VCAN, Length 766 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-207ENST00000507162 TRPM3Q9HCF6 1732 aaPredicted RBP10.87□□□□□ -0.67
VCAN-207ENST00000507162 IFT172Q9UG01 1749 aa10.87□□□□□ -0.67
VCAN-207ENST00000507162 ABTB2Q8N961 1025 aa10.87□□□□□ -0.67
VCAN-207ENST00000507162 ALS2Q96Q42 1657 aa10.87□□□□□ -0.67
VCAN-207ENST00000507162 ANKRD30BQ9BXX2 1392 aa10.87□□□□□ -0.67
VCAN-207ENST00000507162 WASLO00401 505 aaPredicted RBP10.86□□□□□ -0.67
VCAN-207ENST00000507162 ZNF827Q17R98 1081 aa10.86□□□□□ -0.67
VCAN-207ENST00000507162 SLC16A10Q8TF71 515 aa10.86□□□□□ -0.67
VCAN-207ENST00000507162 ACSBG1Q96GR2 724 aa10.86□□□□□ -0.67
VCAN-207ENST00000507162 TRAK1Q9UPV9 953 aa10.86□□□□□ -0.67
VCAN-207ENST00000507162 EXOC5O00471 708 aa10.85□□□□□ -0.67
VCAN-207ENST00000507162 KIF3CO14782 793 aa10.85□□□□□ -0.67
VCAN-207ENST00000507162 GCP02774 474 aa10.84□□□□□ -0.67
VCAN-207ENST00000507162 ATP7BP35670 1465 aa10.84□□□□□ -0.67
VCAN-207ENST00000507162 RGPD3A6NKT7 1758 aaPredicted RBP10.83□□□□□ -0.68
VCAN-207ENST00000507162 RGPD4Q7Z3J3 1758 aa10.83□□□□□ -0.68
VCAN-207ENST00000507162 HTRA3P83110 453 aa10.83□□□□□ -0.68
VCAN-207ENST00000507162 PPP4R3CPQ6ZMV5 832 aa10.83□□□□□ -0.68
VCAN-207ENST00000507162 NUDT16Q96DE0 195 aaKnown RBP10.83□□□□□ -0.68
VCAN-207ENST00000507162 SBF2Q86WG5 1849 aa10.83□□□□□ -0.68
VCAN-207ENST00000507162 CRB1P82279 1406 aa10.83□□□□□ -0.68
VCAN-207ENST00000507162 EIF3AQ14152 1382 aaKnown RBP10.82□□□□□ -0.68
VCAN-207ENST00000507162 KNDC1Q76NI1 1749 aa10.82□□□□□ -0.68
VCAN-207ENST00000507162 NLRP13Q86W25 1043 aa10.82□□□□□ -0.68
VCAN-207ENST00000507162 CDCA7Q9BWT1 371 aaPredicted RBP10.82□□□□□ -0.68
VCAN-207ENST00000507162 LRRC4BQ9NT99 713 aa10.82□□□□□ -0.68
VCAN-207ENST00000507162 TFCP2L1Q9NZI6 479 aa10.82□□□□□ -0.68
VCAN-207ENST00000507162 WWC3Q9ULE0 1092 aa10.82□□□□□ -0.68
VCAN-207ENST00000507162 PEAK1Q9H792 1746 aa10.81□□□□□ -0.68
VCAN-207ENST00000507162 CPDO75976 1380 aa10.81□□□□□ -0.68
VCAN-207ENST00000507162 CSB-PGBD3P0DP91 1061 aa10.81□□□□□ -0.68
VCAN-207ENST00000507162 KLRG1Q96E93 195 aa10.81□□□□□ -0.68
VCAN-207ENST00000507162 PIK3C2GO75747 1445 aa10.81□□□□□ -0.68
VCAN-207ENST00000507162 KAT6BQ8WYB5 2073 aa10.81□□□□□ -0.68
VCAN-207ENST00000507162 PARP4Q9UKK3 1724 aaKnown RBP10.81□□□□□ -0.68
VCAN-207ENST00000507162 TOMM70O94826 608 aa10.8□□□□□ -0.68
VCAN-207ENST00000507162 CNKSR2Q8WXI2 1034 aa10.8□□□□□ -0.68
VCAN-207ENST00000507162 AKT1S1Q96B36 256 aa10.8□□□□□ -0.68
VCAN-207ENST00000507162 CRYBG1Q9Y4K1 1723 aa10.8□□□□□ -0.68
VCAN-207ENST00000507162 ACEP12821 1306 aa10.8□□□□□ -0.68
VCAN-207ENST00000507162 COL5A2P05997 1499 aaPredicted RBP10.8□□□□□ -0.68
VCAN-207ENST00000507162 PNPLA7Q6ZV29 1317 aa10.79□□□□□ -0.68
VCAN-207ENST00000507162 AATKQ6ZMQ8 1374 aa10.78□□□□□ -0.68
VCAN-207ENST00000507162 PCNTO95613 3336 aa10.78□□□□□ -0.68
VCAN-207ENST00000507162 BCL9O00512 1426 aa10.78□□□□□ -0.68
VCAN-207ENST00000507162 KCNQ4P56696 695 aa10.78□□□□□ -0.68
VCAN-207ENST00000507162 JMYQ8N9B5 988 aa10.78□□□□□ -0.68
VCAN-207ENST00000507162 PCDH10Q9P2E7 1040 aa10.78□□□□□ -0.68
VCAN-207ENST00000507162 ADCY9O60503 1353 aa10.77□□□□□ -0.68
VCAN-207ENST00000507162 MSL1Q68DK7 614 aa10.77□□□□□ -0.69
VCAN-207ENST00000507162 PPARGC1BQ86YN6 1023 aaKnown RBP10.77□□□□□ -0.69
VCAN-207ENST00000507162 CDK19Q9BWU1 502 aa10.77□□□□□ -0.69
VCAN-207ENST00000507162 AXIN2Q9Y2T1 843 aa10.77□□□□□ -0.69
VCAN-207ENST00000507162 PHRF1Q9P1Y6 1649 aaKnown RBP10.76□□□□□ -0.69
VCAN-207ENST00000507162 TULP4Q9NRJ4 1543 aa10.76□□□□□ -0.69
VCAN-207ENST00000507162 USP19O94966 1318 aa10.76□□□□□ -0.69
VCAN-207ENST00000507162 WDR17Q8IZU2 1322 aa10.76□□□□□ -0.69
VCAN-207ENST00000507162 SPATA31E1Q6ZUB1 1445 aa10.75□□□□□ -0.69
VCAN-207ENST00000507162 NLRP6P59044 892 aa10.75□□□□□ -0.69
VCAN-207ENST00000507162 CARD10Q9BWT7 1032 aa10.75□□□□□ -0.69
VCAN-207ENST00000507162 USP6P35125 1406 aa10.75□□□□□ -0.69
VCAN-207ENST00000507162 LRRC37A3O60309 1634 aa10.74□□□□□ -0.69
VCAN-207ENST00000507162 LMO7Q8WWI1 1683 aa10.74□□□□□ -0.69
VCAN-207ENST00000507162 C16orf71Q8IYS4 520 aaPredicted RBP10.74□□□□□ -0.69
VCAN-207ENST00000507162 CD2APQ9Y5K6 639 aa10.74□□□□□ -0.69
VCAN-207ENST00000507162 CCDC61Q9Y6R9 512 aa10.74□□□□□ -0.69
VCAN-207ENST00000507162 BRD4O60885 1362 aaPredicted RBP10.74□□□□□ -0.69
VCAN-207ENST00000507162 PLEKHG3A1L390 1219 aa10.73□□□□□ -0.69
VCAN-207ENST00000507162 SOX12O15370 315 aa10.73□□□□□ -0.69
VCAN-207ENST00000507162 SLC27A3Q5K4L6 730 aa10.73□□□□□ -0.69
VCAN-207ENST00000507162 COL23A1Q86Y22 540 aaPredicted RBP10.73□□□□□ -0.69
VCAN-207ENST00000507162 NMRK2Q9NPI5 230 aa10.73□□□□□ -0.69
VCAN-207ENST00000507162 HSPA1AP0DMV8 641 aaKnown RBP10.72□□□□□ -0.69
VCAN-207ENST00000507162 HSPA1BP0DMV9 641 aaKnown RBP10.72□□□□□ -0.69
VCAN-207ENST00000507162 KDM2AQ9Y2K7 1162 aa10.72□□□□□ -0.69
VCAN-207ENST00000507162 POLR3AO14802 1390 aaPredicted RBP10.71□□□□□ -0.69
VCAN-207ENST00000507162 TOPAZ1Q8N9V7 1692 aa10.71□□□□□ -0.69
VCAN-207ENST00000507162 RBM46Q8TBY0 533 aaKnown RBP10.71□□□□□ -0.69
VCAN-207ENST00000507162 SYTL4Q96C24 671 aaPredicted RBP10.71□□□□□ -0.69
VCAN-207ENST00000507162 IGSF1Q8N6C5 1336 aa10.7□□□□□ -0.7
VCAN-207ENST00000507162 MPHOSPH9Q99550 1183 aa10.69□□□□□ -0.7
VCAN-207ENST00000507162 NLRP2Q9NX02 1062 aa10.69□□□□□ -0.7
VCAN-207ENST00000507162 AKAP12Q02952 1782 aa10.69□□□□□ -0.7
VCAN-207ENST00000507162 DDX54Q8TDD1 881 aaKnown RBP10.68□□□□□ -0.7
VCAN-207ENST00000507162 PAPPAQ13219 1627 aa10.68□□□□□ -0.7
VCAN-207ENST00000507162 FSTL1Q12841 308 aa10.67□□□□□ -0.7
VCAN-207ENST00000507162 ARHGEF25Q86VW2 580 aa10.67□□□□□ -0.7
VCAN-207ENST00000507162 CCNL1Q9UK58 526 aaPredicted RBP10.67□□□□□ -0.7
VCAN-207ENST00000507162 IL2RBP14784 551 aa10.66□□□□□ -0.7
VCAN-207ENST00000507162 PRIM1P49642 420 aaKnown RBP10.66□□□□□ -0.7
VCAN-207ENST00000507162 SRPK2P78362 688 aaKnown RBP10.66□□□□□ -0.7
VCAN-207ENST00000507162 ARHGAP27Q6ZUM4 889 aa10.66□□□□□ -0.7
VCAN-207ENST00000507162 CCDC7Q96M83 1385 aa10.65□□□□□ -0.7
VCAN-207ENST00000507162 TNS2Q63HR2 1409 aa10.65□□□□□ -0.7
VCAN-207ENST00000507162 WDR90Q96KV7 1748 aa10.64□□□□□ -0.71
VCAN-207ENST00000507162 FAM161AQ3B820 660 aa10.64□□□□□ -0.71
VCAN-207ENST00000507162 RRAGCQ9HB90 399 aa10.64□□□□□ -0.71
VCAN-207ENST00000507162 CABP2Q9NPB3 220 aa10.64□□□□□ -0.71
VCAN-207ENST00000507162 PPIP5K1Q6PFW1 1433 aa10.64□□□□□ -0.71
VCAN-207ENST00000507162 NHSQ6T4R5 1651 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms