RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 AFF2P51816 1311 aa11.09□□□□□ -0.63
LIMCH1-206ENST00000505705 MAP3K19Q56UN5 1328 aa11.09□□□□□ -0.63
LIMCH1-206ENST00000505705 LTV1Q96GA3 475 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-206ENST00000505705 EMILIN1Q9Y6C2 1016 aa11.09□□□□□ -0.63
LIMCH1-206ENST00000505705 AATKQ6ZMQ8 1374 aa11.08□□□□□ -0.64
LIMCH1-206ENST00000505705 HOXC9P31274 260 aa11.08□□□□□ -0.64
LIMCH1-206ENST00000505705 ZNF772Q68DY9 489 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-206ENST00000505705 IP6K1Q92551 441 aa11.08□□□□□ -0.64
LIMCH1-206ENST00000505705 POLKQ9UBT6 870 aa11.08□□□□□ -0.64
LIMCH1-206ENST00000505705 ABCA3Q99758 1704 aa11.08□□□□□ -0.64
LIMCH1-206ENST00000505705 USP54Q70EL1 1684 aa11.08□□□□□ -0.64
LIMCH1-206ENST00000505705 ANKRD26Q9UPS8 1709 aa11.07□□□□□ -0.64
LIMCH1-206ENST00000505705 MARF1Q9Y4F3 1742 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-206ENST00000505705 CRYBG1Q9Y4K1 1723 aa11.07□□□□□ -0.64
LIMCH1-206ENST00000505705 MTHFSP49914 203 aa11.07□□□□□ -0.64
LIMCH1-206ENST00000505705 DIEXFQ68CQ4 756 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-206ENST00000505705 UNC5CLQ8IV45 518 aa11.07□□□□□ -0.64
LIMCH1-206ENST00000505705 AXIN2Q9Y2T1 843 aa11.07□□□□□ -0.64
LIMCH1-206ENST00000505705 NFAT5O94916 1531 aa11.07□□□□□ -0.64
LIMCH1-206ENST00000505705 FLT4P35916 1363 aa11.06□□□□□ -0.64
LIMCH1-206ENST00000505705 PPP2R1AP30153 589 aa11.06□□□□□ -0.64
LIMCH1-206ENST00000505705 HSP90AB2PQ58FF8 381 aa11.06□□□□□ -0.64
LIMCH1-206ENST00000505705 TOM1L2Q6ZVM7 507 aa11.06□□□□□ -0.64
LIMCH1-206ENST00000505705 FNBP4Q8N3X1 1017 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-206ENST00000505705 ANKRD24Q8TF21 1146 aa11.06□□□□□ -0.64
LIMCH1-206ENST00000505705 CFAP53Q96M91 514 aa11.06□□□□□ -0.64
LIMCH1-206ENST00000505705 PRKRIP1Q9H875 184 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-206ENST00000505705 QTRT2Q9H974 415 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-206ENST00000505705 USP35Q9P2H5 1018 aa11.06□□□□□ -0.64
LIMCH1-206ENST00000505705 TRPC5Q9UL62 973 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-206ENST00000505705 COL14A1Q05707 1796 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-206ENST00000505705 RTL1A6NKG5 1358 aa11.05□□□□□ -0.64
LIMCH1-206ENST00000505705 SMG6Q86US8 1419 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-206ENST00000505705 NLRP2Q9NX02 1062 aa11.05□□□□□ -0.64
LIMCH1-206ENST00000505705 MYBBP1AQ9BQG0 1328 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-206ENST00000505705 PARD3Q8TEW0 1356 aa11.04□□□□□ -0.64
LIMCH1-206ENST00000505705 LTN1O94822 1766 aa11.04□□□□□ -0.64
LIMCH1-206ENST00000505705 MAP2P11137 1827 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-206ENST00000505705 SLIT2O94813 1529 aa11.04□□□□□ -0.64
LIMCH1-206ENST00000505705 KIF24Q5T7B8 1368 aa11.03□□□□□ -0.64
LIMCH1-206ENST00000505705 BLMP54132 1417 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-206ENST00000505705 A0A0G2JS52 829 aa11.03□□□□□ -0.64
LIMCH1-206ENST00000505705 MYT1Q01538 1121 aa11.03□□□□□ -0.64
LIMCH1-206ENST00000505705 LARP1Q6PKG0 1096 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-206ENST00000505705 INSRP06213 1382 aa11.03□□□□□ -0.64
LIMCH1-206ENST00000505705 PLCH1Q4KWH8 1693 aa11.02□□□□□ -0.64
LIMCH1-206ENST00000505705 CAMTA1Q9Y6Y1 1673 aa11.02□□□□□ -0.64
LIMCH1-206ENST00000505705 BCL9LQ86UU0 1499 aa11.02□□□□□ -0.65
LIMCH1-206ENST00000505705 DIAPH1O60610 1272 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-206ENST00000505705 VPS72Q15906 364 aa11.02□□□□□ -0.65
LIMCH1-206ENST00000505705 NUDCQ9Y266 331 aa11.02□□□□□ -0.65
LIMCH1-206ENST00000505705 ERBB3P21860 1342 aa11.02□□□□□ -0.65
LIMCH1-206ENST00000505705 WDR17Q8IZU2 1322 aa11.02□□□□□ -0.65
LIMCH1-206ENST00000505705 COL5A2P05997 1499 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-206ENST00000505705 U2SURPO15042 1029 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-206ENST00000505705 RXRBP28702 533 aa11.01□□□□□ -0.65
LIMCH1-206ENST00000505705 EIF4A2Q14240 407 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-206ENST00000505705 GJD4Q96KN9 370 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-206ENST00000505705 ABCC6O95255 1503 aa11□□□□□ -0.65
LIMCH1-206ENST00000505705 RGS17Q9UGC6 210 aaPredicted RBP11□□□□□ -0.65
LIMCH1-206ENST00000505705 NWD2Q9ULI1 1742 aa11□□□□□ -0.65
LIMCH1-206ENST00000505705 CRB1P82279 1406 aa11□□□□□ -0.65
LIMCH1-206ENST00000505705 LMO7Q8WWI1 1683 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 COL18A1P39060 1754 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 RGPD5Q99666 1765 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 RBM6P78332 1123 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 NBPF6Q5VWK0 638 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 POTEAQ6S8J7 498 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 TCP11L2Q8N4U5 519 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 USHBP1Q8N6Y0 703 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 NBPF4Q96M43 638 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 CARD10Q9BWT7 1032 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 THRAP3Q9Y2W1 955 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 SPATA31A1Q5TZJ5 1347 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 SPATA31A5Q5VU36 1347 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 SPATA31A7Q8IWB4 1347 aa10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 CDK12Q9NYV4 1490 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-206ENST00000505705 PEAK1Q9H792 1746 aa10.98□□□□□ -0.65
LIMCH1-206ENST00000505705 KCNA4P22459 653 aa10.98□□□□□ -0.65
LIMCH1-206ENST00000505705 IL13P35225 146 aa10.98□□□□□ -0.65
LIMCH1-206ENST00000505705 FAM98CQ17RN3 349 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-206ENST00000505705 EYA1Q99502 592 aa10.98□□□□□ -0.65
LIMCH1-206ENST00000505705 ATRNO75882 1429 aa10.98□□□□□ -0.65
LIMCH1-206ENST00000505705 U2AF1L5P0DN76 240 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-206ENST00000505705 U2AF1Q01081 240 aaKnown RBP eCLIP10.97□□□□□ -0.65
LIMCH1-206ENST00000505705 WDR43Q15061 677 aaKnown RBP eCLIP10.97□□□□□ -0.65
LIMCH1-206ENST00000505705 RAPGEF4Q8WZA2 1011 aa10.97□□□□□ -0.65
LIMCH1-206ENST00000505705 MRS2Q9HD23 443 aa10.97□□□□□ -0.65
LIMCH1-206ENST00000505705 HMOX1P09601 288 aa10.96□□□□□ -0.65
LIMCH1-206ENST00000505705 IL2RBP14784 551 aa10.96□□□□□ -0.65
LIMCH1-206ENST00000505705 TATP17735 454 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-206ENST00000505705 SULT6B1Q6IMI4 303 aa10.96□□□□□ -0.65
LIMCH1-206ENST00000505705 NRAPQ86VF7 1730 aa10.95□□□□□ -0.66
LIMCH1-206ENST00000505705 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-206ENST00000505705 NEFMP07197 916 aa10.95□□□□□ -0.66
LIMCH1-206ENST00000505705 BARGINQ6ZT62 677 aa10.95□□□□□ -0.66
LIMCH1-206ENST00000505705 CDCA7Q9BWT1 371 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-206ENST00000505705 IGSF1Q8N6C5 1336 aa10.94□□□□□ -0.66
LIMCH1-206ENST00000505705 EXOC5O00471 708 aa10.94□□□□□ -0.66
LIMCH1-206ENST00000505705 PDE3BQ13370 1112 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms