RNA–Protein interactions for RNA: ENST00000504380.1

PDLIM7-212, Transcript of PDZ and LIM domain 7, humanhuman

TSL 2

Gene PDLIM7, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-212ENST00000504380 COL18A1P39060 1754 aa18.02■□□□□ 0.48
PDLIM7-212ENST00000504380 COL14A1Q05707 1796 aaKnown RBP18.02■□□□□ 0.48
PDLIM7-212ENST00000504380 RGPD5Q99666 1765 aa18.02■□□□□ 0.48
PDLIM7-212ENST00000504380 PLCH1Q4KWH8 1693 aa18.02■□□□□ 0.47
PDLIM7-212ENST00000504380 PEAK1Q9H792 1746 aa18.01■□□□□ 0.47
PDLIM7-212ENST00000504380 STRN4Q9NRL3 753 aa18.01■□□□□ 0.47
PDLIM7-212ENST00000504380 CAMTA1Q9Y6Y1 1673 aa18.01■□□□□ 0.47
PDLIM7-212ENST00000504380 AATKQ6ZMQ8 1374 aa18.01■□□□□ 0.47
PDLIM7-212ENST00000504380 SLIT2O94813 1529 aa18■□□□□ 0.47
PDLIM7-212ENST00000504380 HOXC9P31274 260 aa18■□□□□ 0.47
PDLIM7-212ENST00000504380 FNBP4Q8N3X1 1017 aaPredicted RBP18■□□□□ 0.47
PDLIM7-212ENST00000504380 LTV1Q96GA3 475 aaPredicted RBP18■□□□□ 0.47
PDLIM7-212ENST00000504380 USP21Q9UK80 565 aa18■□□□□ 0.47
PDLIM7-212ENST00000504380 LMO7Q8WWI1 1683 aa17.99■□□□□ 0.47
PDLIM7-212ENST00000504380 IP6K1Q92551 441 aa17.99■□□□□ 0.47
PDLIM7-212ENST00000504380 PPP2R1AP30153 589 aa17.98■□□□□ 0.47
PDLIM7-212ENST00000504380 MTHFSP49914 203 aa17.98■□□□□ 0.47
PDLIM7-212ENST00000504380 EVA1CP58658 441 aa17.98■□□□□ 0.47
PDLIM7-212ENST00000504380 HSP90AB2PQ58FF8 381 aa17.98■□□□□ 0.47
PDLIM7-212ENST00000504380 PARD3Q8TEW0 1356 aa17.98■□□□□ 0.47
PDLIM7-212ENST00000504380 BCL9LQ86UU0 1499 aa17.98■□□□□ 0.47
PDLIM7-212ENST00000504380 UNC5CLQ8IV45 518 aa17.97■□□□□ 0.47
PDLIM7-212ENST00000504380 NRAPQ86VF7 1730 aa17.96■□□□□ 0.47
PDLIM7-212ENST00000504380 PRKRIP1Q9H875 184 aaPredicted RBP17.96■□□□□ 0.47
PDLIM7-212ENST00000504380 CSB-PGBD3P0DP91 1061 aa17.95■□□□□ 0.46
PDLIM7-212ENST00000504380 LARP1Q6PKG0 1096 aaKnown RBP17.95■□□□□ 0.46
PDLIM7-212ENST00000504380 ANKRD24Q8TF21 1146 aa17.95■□□□□ 0.46
PDLIM7-212ENST00000504380 NWD2Q9ULI1 1742 aa17.95■□□□□ 0.46
PDLIM7-212ENST00000504380 COL5A2P05997 1499 aaPredicted RBP17.95■□□□□ 0.46
PDLIM7-212ENST00000504380 FLT4P35916 1363 aa17.94■□□□□ 0.46
PDLIM7-212ENST00000504380 RALBP1Q15311 655 aa17.94■□□□□ 0.46
PDLIM7-212ENST00000504380 QTRT2Q9H974 415 aaKnown RBP17.94■□□□□ 0.46
PDLIM7-212ENST00000504380 CCDC9Q9Y3X0 531 aaKnown RBP17.94■□□□□ 0.46
PDLIM7-212ENST00000504380 RTL1A6NKG5 1358 aa17.93■□□□□ 0.46
PDLIM7-212ENST00000504380 SMG6Q86US8 1419 aaKnown RBP17.93■□□□□ 0.46
PDLIM7-212ENST00000504380 RBM6P78332 1123 aaKnown RBP17.93■□□□□ 0.46
PDLIM7-212ENST00000504380 ANP32CO43423 234 aa17.92■□□□□ 0.46
PDLIM7-212ENST00000504380 USP35Q9P2H5 1018 aa17.92■□□□□ 0.46
PDLIM7-212ENST00000504380 INSRP06213 1382 aa17.91■□□□□ 0.46
PDLIM7-212ENST00000504380 BLMP54132 1417 aaPredicted RBP17.91■□□□□ 0.46
PDLIM7-212ENST00000504380 DIEXFQ68CQ4 756 aaKnown RBP17.91■□□□□ 0.46
PDLIM7-212ENST00000504380 TOM1L2Q6ZVM7 507 aa17.91■□□□□ 0.46
PDLIM7-212ENST00000504380 ABCC6O95255 1503 aa17.91■□□□□ 0.46
PDLIM7-212ENST00000504380 ERBB3P21860 1342 aa17.91■□□□□ 0.46
PDLIM7-212ENST00000504380 RGPD2P0DJD1 1756 aa17.91■□□□□ 0.46
PDLIM7-212ENST00000504380 ATRNO75882 1429 aa17.9■□□□□ 0.46
PDLIM7-212ENST00000504380 EIF4A2Q14240 407 aaKnown RBP17.9■□□□□ 0.46
PDLIM7-212ENST00000504380 VPS72Q15906 364 aa17.9■□□□□ 0.46
PDLIM7-212ENST00000504380 NLRP2Q9NX02 1062 aa17.9■□□□□ 0.46
PDLIM7-212ENST00000504380 TRPC5Q9UL62 973 aaPredicted RBP17.9■□□□□ 0.46
PDLIM7-212ENST00000504380 WDR17Q8IZU2 1322 aa17.9■□□□□ 0.46
PDLIM7-212ENST00000504380 MYBBP1AQ9BQG0 1328 aaKnown RBP17.9■□□□□ 0.46
PDLIM7-212ENST00000504380 KIF24Q5T7B8 1368 aa17.9■□□□□ 0.46
PDLIM7-212ENST00000504380 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.89■□□□□ 0.46
PDLIM7-212ENST00000504380 USHBP1Q8N6Y0 703 aa17.89■□□□□ 0.45
PDLIM7-212ENST00000504380 RGS12O14924 1447 aa17.89■□□□□ 0.45
PDLIM7-212ENST00000504380 NBPF6Q5VWK0 638 aa17.88■□□□□ 0.45
PDLIM7-212ENST00000504380 NBPF4Q96M43 638 aa17.88■□□□□ 0.45
PDLIM7-212ENST00000504380 SPATA31A5Q5VU36 1347 aa17.88■□□□□ 0.45
PDLIM7-212ENST00000504380 SPATA31A7Q8IWB4 1347 aa17.88■□□□□ 0.45
PDLIM7-212ENST00000504380 GJD4Q96KN9 370 aaPredicted RBP17.87■□□□□ 0.45
PDLIM7-212ENST00000504380 SPATA31A1Q5TZJ5 1347 aa17.87■□□□□ 0.45
PDLIM7-212ENST00000504380 IL13P35225 146 aa17.86■□□□□ 0.45
PDLIM7-212ENST00000504380 CCDC184Q52MB2 194 aa17.86■□□□□ 0.45
PDLIM7-212ENST00000504380 EYA1Q99502 592 aa17.86■□□□□ 0.45
PDLIM7-212ENST00000504380 CRB1P82279 1406 aa17.86■□□□□ 0.45
PDLIM7-212ENST00000504380 COL3A1P02461 1466 aaPredicted RBP17.86■□□□□ 0.45
PDLIM7-212ENST00000504380 DIAPH1O60610 1272 aaKnown RBP17.85■□□□□ 0.45
PDLIM7-212ENST00000504380 GLI3P10071 1580 aa17.85■□□□□ 0.45
PDLIM7-212ENST00000504380 CFAP53Q96M91 514 aa17.85■□□□□ 0.45
PDLIM7-212ENST00000504380 CARD10Q9BWT7 1032 aa17.85■□□□□ 0.45
PDLIM7-212ENST00000504380 FAM98CQ17RN3 349 aaKnown RBP17.84■□□□□ 0.45
PDLIM7-212ENST00000504380 TCP11L2Q8N4U5 519 aa17.83■□□□□ 0.44
PDLIM7-212ENST00000504380 U2SURPO15042 1029 aaKnown RBP17.82■□□□□ 0.44
PDLIM7-212ENST00000504380 AEBP1Q8IUX7 1158 aa17.81■□□□□ 0.44
PDLIM7-212ENST00000504380 FAM208AQ9UK61 1670 aaKnown RBP17.8■□□□□ 0.44
PDLIM7-212ENST00000504380 A0A0G2JS52 829 aa17.8■□□□□ 0.44
PDLIM7-212ENST00000504380 HMOX1P09601 288 aa17.8■□□□□ 0.44
PDLIM7-212ENST00000504380 MYT1Q01538 1121 aa17.8■□□□□ 0.44
PDLIM7-212ENST00000504380 MIER1Q8N108 512 aa17.79■□□□□ 0.44
PDLIM7-212ENST00000504380 IGSF1Q8N6C5 1336 aa17.78■□□□□ 0.44
PDLIM7-212ENST00000504380 SULT6B1Q6IMI4 303 aa17.78■□□□□ 0.44
PDLIM7-212ENST00000504380 CCDC125Q86Z20 511 aa17.78■□□□□ 0.44
PDLIM7-212ENST00000504380 RGPD1P0DJD0 1748 aa17.78■□□□□ 0.44
PDLIM7-212ENST00000504380 BARGINQ6ZT62 677 aa17.77■□□□□ 0.44
PDLIM7-212ENST00000504380 SEPT12Q8IYM1 358 aa17.77■□□□□ 0.44
PDLIM7-212ENST00000504380 THRAP3Q9Y2W1 955 aaKnown RBP17.77■□□□□ 0.44
PDLIM7-212ENST00000504380 U2AF1L5P0DN76 240 aaPredicted RBP17.76■□□□□ 0.43
PDLIM7-212ENST00000504380 IL2RBP14784 551 aa17.76■□□□□ 0.43
PDLIM7-212ENST00000504380 U2AF1Q01081 240 aaKnown RBP eCLIP17.76■□□□□ 0.43
PDLIM7-212ENST00000504380 MRS2Q9HD23 443 aa17.76■□□□□ 0.43
PDLIM7-212ENST00000504380 NUDCQ9Y266 331 aa17.76■□□□□ 0.43
PDLIM7-212ENST00000504380 MEGF6O75095 1541 aa17.76■□□□□ 0.43
PDLIM7-212ENST00000504380 WNK3Q9BYP7 1800 aa17.75■□□□□ 0.43
PDLIM7-212ENST00000504380 DISP2A7MBM2 1401 aa17.75■□□□□ 0.43
PDLIM7-212ENST00000504380 ONECUT3O60422 494 aaPredicted RBP17.75■□□□□ 0.43
PDLIM7-212ENST00000504380 NCAPD2Q15021 1401 aa17.74■□□□□ 0.43
PDLIM7-212ENST00000504380 RAPGEF4Q8WZA2 1011 aa17.74■□□□□ 0.43
PDLIM7-212ENST00000504380 TATP17735 454 aaPredicted RBP17.73■□□□□ 0.43
PDLIM7-212ENST00000504380 THSD7AQ9UPZ6 1657 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms