RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CIZ1Q9ULV3 898 aaPredicted RBP13.06□□□□□ -0.32
LIMCH1-205ENST00000503057 SMC3Q9UQE7 1217 aa13.06□□□□□ -0.32
LIMCH1-205ENST00000503057 CLASRPQ8N2M8 674 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-205ENST00000503057 THUMPD2Q9BTF0 503 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-205ENST00000503057 CWC22Q9HCG8 908 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-205ENST00000503057 IGHDP01880 384 aa13.06□□□□□ -0.32
LIMCH1-205ENST00000503057 UHRF1BP1LA0JNW5 1464 aa13.06□□□□□ -0.32
LIMCH1-205ENST00000503057 EVA1CP58658 441 aa13.06□□□□□ -0.32
LIMCH1-205ENST00000503057 CARD14Q9BXL6 1004 aa13.06□□□□□ -0.32
LIMCH1-205ENST00000503057 NLRP2Q9NX02 1062 aa13.05□□□□□ -0.32
LIMCH1-205ENST00000503057 GNAT3A8MTJ3 354 aa13.05□□□□□ -0.32
LIMCH1-205ENST00000503057 FOXD4L6Q3SYB3 417 aaPredicted RBP13.05□□□□□ -0.32
LIMCH1-205ENST00000503057 FOXD4L3Q6VB84 417 aaPredicted RBP13.05□□□□□ -0.32
LIMCH1-205ENST00000503057 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.05□□□□□ -0.32
LIMCH1-205ENST00000503057 TTC37Q6PGP7 1564 aa13.05□□□□□ -0.32
LIMCH1-205ENST00000503057 TTC21BQ7Z4L5 1316 aa13.04□□□□□ -0.32
LIMCH1-205ENST00000503057 FYB1O15117 783 aa13.04□□□□□ -0.32
LIMCH1-205ENST00000503057 HIP1O00291 1037 aa13.04□□□□□ -0.32
LIMCH1-205ENST00000503057 CFAP74Q9C0B2 1584 aa13.04□□□□□ -0.32
LIMCH1-205ENST00000503057 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.04□□□□□ -0.32
LIMCH1-205ENST00000503057 ZFYVE9O95405 1425 aa13.04□□□□□ -0.32
LIMCH1-205ENST00000503057 AIMP1Q12904 312 aaKnown RBP13.04□□□□□ -0.32
LIMCH1-205ENST00000503057 CDC42BPAQ5VT25 1732 aa13.04□□□□□ -0.32
LIMCH1-205ENST00000503057 NEK4P51957 841 aa13.03□□□□□ -0.32
LIMCH1-205ENST00000503057 CCDC34Q96HJ3 373 aa13.03□□□□□ -0.32
LIMCH1-205ENST00000503057 ANKLE2Q86XL3 938 aa13.03□□□□□ -0.32
LIMCH1-205ENST00000503057 ISY1Q9ULR0 285 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-205ENST00000503057 PSMA5P28066 241 aa13.03□□□□□ -0.32
LIMCH1-205ENST00000503057 HDAC1Q13547 482 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-205ENST00000503057 CCDC9Q9Y3X0 531 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-205ENST00000503057 CROCC2H7BZ55 1655 aa13.03□□□□□ -0.32
LIMCH1-205ENST00000503057 MCM10Q7L590 875 aa13.03□□□□□ -0.32
LIMCH1-205ENST00000503057 PTPRCP08575 1304 aa13.02□□□□□ -0.32
LIMCH1-205ENST00000503057 ABCC1P33527 1531 aa13.02□□□□□ -0.32
LIMCH1-205ENST00000503057 RIMS2Q9UQ26 1411 aa13.02□□□□□ -0.33
LIMCH1-205ENST00000503057 TRPM2O94759 1503 aa13.02□□□□□ -0.33
LIMCH1-205ENST00000503057 SF3A1Q15459 793 aaKnown RBP13.02□□□□□ -0.33
LIMCH1-205ENST00000503057 ZNF530Q6P9A1 599 aaPredicted RBP13.02□□□□□ -0.33
LIMCH1-205ENST00000503057 ARHGAP45Q92619 1136 aa13.02□□□□□ -0.33
LIMCH1-205ENST00000503057 MBD3O95983 291 aa13.01□□□□□ -0.33
LIMCH1-205ENST00000503057 PLXNC1O60486 1568 aa13.01□□□□□ -0.33
LIMCH1-205ENST00000503057 DCTN1Q14203 1278 aa13.01□□□□□ -0.33
LIMCH1-205ENST00000503057 PPIP5K1Q6PFW1 1433 aa13.01□□□□□ -0.33
LIMCH1-205ENST00000503057 SYNMO15061 1565 aa13.01□□□□□ -0.33
LIMCH1-205ENST00000503057 MCM4P33991 863 aa13.01□□□□□ -0.33
LIMCH1-205ENST00000503057 TNRQ92752 1358 aa13.01□□□□□ -0.33
LIMCH1-205ENST00000503057 ATP10AO60312 1499 aa13□□□□□ -0.33
LIMCH1-205ENST00000503057 KCNH5Q8NCM2 988 aa13□□□□□ -0.33
LIMCH1-205ENST00000503057 A0A1W2PP64 1363 aa13□□□□□ -0.33
LIMCH1-205ENST00000503057 NASPP49321 788 aaPredicted RBP13□□□□□ -0.33
LIMCH1-205ENST00000503057 MBIPQ9NS73 344 aa13□□□□□ -0.33
LIMCH1-205ENST00000503057 SHROOM2Q13796 1616 aa13□□□□□ -0.33
LIMCH1-205ENST00000503057 PROSER2Q86WR7 435 aaPredicted RBP13□□□□□ -0.33
LIMCH1-205ENST00000503057 CHD1O14646 1710 aa13□□□□□ -0.33
LIMCH1-205ENST00000503057 VPS37CA5D8V6 355 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-205ENST00000503057 TATP17735 454 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-205ENST00000503057 FSD1Q9BTV5 496 aa12.99□□□□□ -0.33
LIMCH1-205ENST00000503057 PRDM15P57071 1507 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-205ENST00000503057 BMP2KLQ5H9B9 411 aa12.99□□□□□ -0.33
LIMCH1-205ENST00000503057 TBC1D32Q96NH3 1257 aa12.99□□□□□ -0.33
LIMCH1-205ENST00000503057 YTHDC2Q9H6S0 1430 aaKnown RBP12.99□□□□□ -0.33
LIMCH1-205ENST00000503057 AMOTL2Q9Y2J4 779 aa12.99□□□□□ -0.33
LIMCH1-205ENST00000503057 ZCCHC11Q5TAX3 1644 aaKnown RBP12.98□□□□□ -0.33
LIMCH1-205ENST00000503057 BTBD11A6QL63 1104 aa12.98□□□□□ -0.33
LIMCH1-205ENST00000503057 C8orf34Q49A92 452 aa12.98□□□□□ -0.33
LIMCH1-205ENST00000503057 GOLGA6L19H0YKK7 550 aa12.98□□□□□ -0.33
LIMCH1-205ENST00000503057 LETM1O95202 739 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-205ENST00000503057 LRRIQ1Q96JM4 1722 aa12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 IQGAP3Q86VI3 1631 aa12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 BRPF3Q9ULD4 1205 aa12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 CAVIN1Q6NZI2 390 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 CPLX2Q6PUV4 134 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 TBC1D2Q9BYX2 928 aa12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 TOMM22Q9NS69 142 aa12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 SPG7Q9UQ90 795 aa12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 PCDHB15Q9Y5E8 787 aa12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 TAF7Q15545 349 aaPredicted RBP12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 MIS18AQ9NYP9 233 aa12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 NUCB1Q02818 461 aa12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 ACEP12821 1306 aa12.97□□□□□ -0.33
LIMCH1-205ENST00000503057 RAB11FIP3O75154 756 aa12.96□□□□□ -0.33
LIMCH1-205ENST00000503057 MYOM2P54296 1465 aa12.96□□□□□ -0.33
LIMCH1-205ENST00000503057 SRGAP3O43295 1099 aa12.96□□□□□ -0.33
LIMCH1-205ENST00000503057 PRPF40AO75400 957 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-205ENST00000503057 PTPRTO14522 1441 aa12.96□□□□□ -0.34
LIMCH1-205ENST00000503057 NCBP3Q53F19 620 aaKnown RBP12.96□□□□□ -0.34
LIMCH1-205ENST00000503057 TTC21AQ8NDW8 1320 aa12.96□□□□□ -0.34
LIMCH1-205ENST00000503057 FAM43AQ8N2R8 423 aa12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 NEUROD6Q96NK8 337 aa12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 SYNE3Q6ZMZ3 975 aa12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 MX1P20591 662 aa12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 CCDC173Q0VFZ6 552 aa12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 BICD2Q8TD16 824 aa12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 SBNO2Q9Y2G9 1366 aa12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 BECN2A8MW95 431 aa12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 NPATQ14207 1427 aa12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 NEO1Q92859 1461 aa12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 TRDNQ13061 729 aa12.95□□□□□ -0.34
LIMCH1-205ENST00000503057 POLKQ9UBT6 870 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms