RNA–Protein interactions for RNA: ENST00000498339.1

CDK9-205, Transcript of cyclin dependent kinase 9, humanhuman

TSL 2

Gene CDK9, Length 458 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-205ENST00000498339 PIK3C2AO00443 1686 aa16.98■□□□□ 0.31
CDK9-205ENST00000498339 PDGFDQ9GZP0 370 aaPredicted RBP16.98■□□□□ 0.31
CDK9-205ENST00000498339 COL18A1P39060 1754 aa16.97■□□□□ 0.31
CDK9-205ENST00000498339 NLRP6P59044 892 aa16.97■□□□□ 0.31
CDK9-205ENST00000498339 STK32BQ9NY57 414 aa16.97■□□□□ 0.31
CDK9-205ENST00000498339 ATF5Q9Y2D1 282 aaPredicted RBP16.97■□□□□ 0.31
CDK9-205ENST00000498339 AATKQ6ZMQ8 1374 aa16.97■□□□□ 0.31
CDK9-205ENST00000498339 PTF1AQ7RTS3 328 aa16.96■□□□□ 0.31
CDK9-205ENST00000498339 ZNF784Q8NCA9 323 aaPredicted RBP16.96■□□□□ 0.31
CDK9-205ENST00000498339 CABP2Q9NPB3 220 aa16.96■□□□□ 0.31
CDK9-205ENST00000498339 USP6P35125 1406 aa16.96■□□□□ 0.3
CDK9-205ENST00000498339 BRD4O60885 1362 aaPredicted RBP16.95■□□□□ 0.3
CDK9-205ENST00000498339 SENP3-EIF4A1A0A087X0R7 540 aa16.94■□□□□ 0.3
CDK9-205ENST00000498339 CSB-PGBD3P0DP91 1061 aa16.94■□□□□ 0.3
CDK9-205ENST00000498339 WDR17Q8IZU2 1322 aa16.94■□□□□ 0.3
CDK9-205ENST00000498339 CENPJQ9HC77 1338 aaPredicted RBP16.94■□□□□ 0.3
CDK9-205ENST00000498339 KAT6BQ8WYB5 2073 aa16.93■□□□□ 0.3
CDK9-205ENST00000498339 SOX12O15370 315 aa16.93■□□□□ 0.3
CDK9-205ENST00000498339 MARCH10Q8NA82 808 aaPredicted RBP16.93■□□□□ 0.3
CDK9-205ENST00000498339 CDCA7Q9BWT1 371 aaPredicted RBP16.93■□□□□ 0.3
CDK9-205ENST00000498339 FHDC1Q9C0D6 1143 aaPredicted RBP16.93■□□□□ 0.3
CDK9-205ENST00000498339 CPSF1Q10570 1443 aaKnown RBP16.93■□□□□ 0.3
CDK9-205ENST00000498339 NHSQ6T4R5 1651 aa16.92■□□□□ 0.3
CDK9-205ENST00000498339 PTGER2P43116 358 aa16.92■□□□□ 0.3
CDK9-205ENST00000498339 TXNRD1Q16881 649 aa16.92■□□□□ 0.3
CDK9-205ENST00000498339 SLC15A2Q16348 729 aa16.9■□□□□ 0.3
CDK9-205ENST00000498339 NBPF1Q3BBV0 1214 aa16.9■□□□□ 0.3
CDK9-205ENST00000498339 PROM2Q8N271 834 aa16.9■□□□□ 0.3
CDK9-205ENST00000498339 MTFR1LQ9H019 292 aa16.9■□□□□ 0.3
CDK9-205ENST00000498339 CABP1Q9NZU7 370 aa16.9■□□□□ 0.3
CDK9-205ENST00000498339 BCL9O00512 1426 aa16.89■□□□□ 0.29
CDK9-205ENST00000498339 SYT17Q9BSW7 474 aa16.89■□□□□ 0.29
CDK9-205ENST00000498339 AXIN2Q9Y2T1 843 aa16.89■□□□□ 0.29
CDK9-205ENST00000498339 TRPM1Q7Z4N2 1603 aa16.88■□□□□ 0.29
CDK9-205ENST00000498339 TNS2Q63HR2 1409 aa16.88■□□□□ 0.29
CDK9-205ENST00000498339 BTAF1O14981 1849 aa16.88■□□□□ 0.29
CDK9-205ENST00000498339 EXOC5O00471 708 aa16.87■□□□□ 0.29
CDK9-205ENST00000498339 KCNH5Q8NCM2 988 aa16.86■□□□□ 0.29
CDK9-205ENST00000498339 CARD10Q9BWT7 1032 aa16.86■□□□□ 0.29
CDK9-205ENST00000498339 PAPPAQ13219 1627 aa16.85■□□□□ 0.29
CDK9-205ENST00000498339 LTN1O94822 1766 aa16.85■□□□□ 0.29
CDK9-205ENST00000498339 KLHL34Q8N239 644 aa16.85■□□□□ 0.29
CDK9-205ENST00000498339 ACSBG1Q96GR2 724 aa16.85■□□□□ 0.29
CDK9-205ENST00000498339 ARXQ96QS3 562 aa16.85■□□□□ 0.29
CDK9-205ENST00000498339 CCDC7Q96M83 1385 aa16.85■□□□□ 0.29
CDK9-205ENST00000498339 ABCC6O95255 1503 aa16.85■□□□□ 0.29
CDK9-205ENST00000498339 C1QTNF8P60827 252 aa16.84■□□□□ 0.29
CDK9-205ENST00000498339 ARHGEF25Q86VW2 580 aa16.84■□□□□ 0.29
CDK9-205ENST00000498339 NFAT5O94916 1531 aa16.83■□□□□ 0.28
CDK9-205ENST00000498339 GPR162Q16538 588 aa16.83■□□□□ 0.28
CDK9-205ENST00000498339 EVC2Q86UK5 1308 aa16.83■□□□□ 0.28
CDK9-205ENST00000498339 GOLGB1Q14789 3259 aaKnown RBP16.83■□□□□ 0.28
CDK9-205ENST00000498339 TTC21BQ7Z4L5 1316 aa16.82■□□□□ 0.28
CDK9-205ENST00000498339 PELP1Q8IZL8 1130 aaKnown RBP16.82■□□□□ 0.28
CDK9-205ENST00000498339 SGIP1Q9BQI5 828 aa16.81■□□□□ 0.28
CDK9-205ENST00000498339 MON2Q7Z3U7 1717 aa16.81■□□□□ 0.28
CDK9-205ENST00000498339 QSER1Q2KHR3 1735 aa16.8■□□□□ 0.28
CDK9-205ENST00000498339 TUBGCP6Q96RT7 1819 aa16.8■□□□□ 0.28
CDK9-205ENST00000498339 TTC21AQ8NDW8 1320 aa16.79■□□□□ 0.28
CDK9-205ENST00000498339 GIGYF1O75420 1035 aaPredicted RBP16.79■□□□□ 0.28
CDK9-205ENST00000498339 MAP3K5Q99683 1374 aa16.78■□□□□ 0.28
CDK9-205ENST00000498339 ZNF692Q9BU19 519 aaPredicted RBP16.78■□□□□ 0.28
CDK9-205ENST00000498339 NLRP2Q9NX02 1062 aa16.78■□□□□ 0.28
CDK9-205ENST00000498339 KTN1Q86UP2 1357 aaKnown RBP16.77■□□□□ 0.28
CDK9-205ENST00000498339 ZNF827Q17R98 1081 aa16.77■□□□□ 0.28
CDK9-205ENST00000498339 POLD1P28340 1107 aa16.76■□□□□ 0.27
CDK9-205ENST00000498339 IL2RBP14784 551 aa16.75■□□□□ 0.27
CDK9-205ENST00000498339 USP54Q70EL1 1684 aa16.75■□□□□ 0.27
CDK9-205ENST00000498339 ERBB3P21860 1342 aa16.74■□□□□ 0.27
CDK9-205ENST00000498339 COL24A1Q17RW2 1714 aa16.73■□□□□ 0.27
CDK9-205ENST00000498339 DOT1LQ8TEK3 1739 aa16.73■□□□□ 0.27
CDK9-205ENST00000498339 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.73■□□□□ 0.27
CDK9-205ENST00000498339 SHANK3Q9BYB0 1731 aa16.73■□□□□ 0.27
CDK9-205ENST00000498339 FAM208AQ9UK61 1670 aaKnown RBP16.72■□□□□ 0.27
CDK9-205ENST00000498339 LRRC4BQ9NT99 713 aa16.72■□□□□ 0.27
CDK9-205ENST00000498339 ROCK2O75116 1388 aaKnown RBP16.72■□□□□ 0.27
CDK9-205ENST00000498339 ANKRD24Q8TF21 1146 aa16.71■□□□□ 0.27
CDK9-205ENST00000498339 CEP350Q5VT06 3117 aa16.7■□□□□ 0.26
CDK9-205ENST00000498339 TFCP2L1Q9NZI6 479 aa16.7■□□□□ 0.26
CDK9-205ENST00000498339 IFFO2Q5TF58 517 aa16.69■□□□□ 0.26
CDK9-205ENST00000498339 SLC16A10Q8TF71 515 aa16.69■□□□□ 0.26
CDK9-205ENST00000498339 SYTL4Q96C24 671 aaPredicted RBP16.69■□□□□ 0.26
CDK9-205ENST00000498339 LY75O60449 1722 aa16.69■□□□□ 0.26
CDK9-205ENST00000498339 PNPLA7Q6ZV29 1317 aa16.69■□□□□ 0.26
CDK9-205ENST00000498339 SLC27A3Q5K4L6 730 aa16.68■□□□□ 0.26
CDK9-205ENST00000498339 NME9Q86XW9 330 aa16.68■□□□□ 0.26
CDK9-205ENST00000498339 DDX54Q8TDD1 881 aaKnown RBP16.68■□□□□ 0.26
CDK9-205ENST00000498339 AKT1S1Q96B36 256 aa16.68■□□□□ 0.26
CDK9-205ENST00000498339 MSH5O43196 834 aa16.67■□□□□ 0.26
CDK9-205ENST00000498339 NLGN2Q8NFZ4 835 aa16.67■□□□□ 0.26
CDK9-205ENST00000498339 USP31Q70CQ4 1352 aa16.66■□□□□ 0.26
CDK9-205ENST00000498339 KCNQ4P56696 695 aa16.66■□□□□ 0.26
CDK9-205ENST00000498339 TMC1Q8TDI8 760 aa16.66■□□□□ 0.26
CDK9-205ENST00000498339 L3MBTL2Q969R5 705 aa16.66■□□□□ 0.26
CDK9-205ENST00000498339 RGPD2P0DJD1 1756 aa16.66■□□□□ 0.26
CDK9-205ENST00000498339 LTV1Q96GA3 475 aaPredicted RBP16.65■□□□□ 0.26
CDK9-205ENST00000498339 HDGFL2Q7Z4V5 671 aaPredicted RBP16.64■□□□□ 0.25
CDK9-205ENST00000498339 GRIN3BO60391 1043 aa16.63■□□□□ 0.25
CDK9-205ENST00000498339 SBNO2Q9Y2G9 1366 aa16.63■□□□□ 0.25
CDK9-205ENST00000498339 CD163L1Q9NR16 1453 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms