RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 SKOR1P84550 965 aa11.26□□□□□ -0.61
VIM-207ENST00000495528 IRF5Q13568 498 aa11.26□□□□□ -0.61
VIM-207ENST00000495528 MAGEB6P1A0A0J9YX57 407 aa11.25□□□□□ -0.61
VIM-207ENST00000495528 SPRYD7Q5W111 196 aa11.25□□□□□ -0.61
VIM-207ENST00000495528 CARD14Q9BXL6 1004 aa11.25□□□□□ -0.61
VIM-207ENST00000495528 ZC3H4Q9UPT8 1303 aaKnown RBP11.25□□□□□ -0.61
VIM-207ENST00000495528 FHAD1B1AJZ9 1412 aa11.25□□□□□ -0.61
VIM-207ENST00000495528 CEP170Q5SW79 1584 aa11.24□□□□□ -0.61
VIM-207ENST00000495528 PDXDC2PQ6P474 469 aa11.24□□□□□ -0.61
VIM-207ENST00000495528 PROSER2Q86WR7 435 aaPredicted RBP11.24□□□□□ -0.61
VIM-207ENST00000495528 GPKOWQ92917 476 aaPredicted RBP eCLIP11.24□□□□□ -0.61
VIM-207ENST00000495528 ADAMTS12P58397 1594 aa11.24□□□□□ -0.61
VIM-207ENST00000495528 PTK2Q05397 1052 aa11.23□□□□□ -0.61
VIM-207ENST00000495528 VAC14Q08AM6 782 aa11.23□□□□□ -0.61
VIM-207ENST00000495528 ZNF697Q5TEC3 545 aa11.23□□□□□ -0.61
VIM-207ENST00000495528 ARHGAP9Q9BRR9 750 aa11.23□□□□□ -0.61
VIM-207ENST00000495528 A6NJR5 290 aa11.22□□□□□ -0.61
VIM-207ENST00000495528 FBXO45P0C2W1 286 aa11.22□□□□□ -0.61
VIM-207ENST00000495528 SH3BP5LQ7L8J4 393 aa11.22□□□□□ -0.61
VIM-207ENST00000495528 WWC1Q8IX03 1113 aa11.22□□□□□ -0.61
VIM-207ENST00000495528 V9GY48 417 aaPredicted RBP11.22□□□□□ -0.61
VIM-207ENST00000495528 TOP2BQ02880 1626 aa11.21□□□□□ -0.61
VIM-207ENST00000495528 ZBBXA8MT70 800 aa11.21□□□□□ -0.61
VIM-207ENST00000495528 WNT7BP56706 349 aa11.21□□□□□ -0.61
VIM-207ENST00000495528 FOXC1Q12948 553 aa11.21□□□□□ -0.61
VIM-207ENST00000495528 C4orf48Q5BLP8 95 aa11.21□□□□□ -0.61
VIM-207ENST00000495528 RC3H1Q5TC82 1133 aaKnown RBP11.21□□□□□ -0.61
VIM-207ENST00000495528 ERICH6Q7L0X2 663 aa11.21□□□□□ -0.61
VIM-207ENST00000495528 BPHLQ86WA6 291 aaPredicted RBP11.21□□□□□ -0.61
VIM-207ENST00000495528 OCSTAMPQ9BR26 566 aa11.21□□□□□ -0.61
VIM-207ENST00000495528 PRG4Q92954 1404 aaPredicted RBP11.2□□□□□ -0.62
VIM-207ENST00000495528 ZBTB33Q86T24 672 aa11.2□□□□□ -0.62
VIM-207ENST00000495528 ZNF598Q86UK7 904 aaKnown RBP11.2□□□□□ -0.62
VIM-207ENST00000495528 EHBP1Q8NDI1 1231 aa11.2□□□□□ -0.62
VIM-207ENST00000495528 ZNF330Q9Y3S2 320 aaPredicted RBP11.2□□□□□ -0.62
VIM-207ENST00000495528 NR1H3Q13133 447 aa11.19□□□□□ -0.62
VIM-207ENST00000495528 BIVM-ERCC5R4GMW8 1640 aa11.19□□□□□ -0.62
VIM-207ENST00000495528 SHROOM2Q13796 1616 aa11.18□□□□□ -0.62
VIM-207ENST00000495528 SH3RF1Q7Z6J0 888 aa11.18□□□□□ -0.62
VIM-207ENST00000495528 FNBP4Q8N3X1 1017 aaPredicted RBP11.18□□□□□ -0.62
VIM-207ENST00000495528 ADAM32Q8TC27 787 aa11.18□□□□□ -0.62
VIM-207ENST00000495528 GPSM3Q9Y4H4 160 aa11.18□□□□□ -0.62
VIM-207ENST00000495528 ERICH3Q5RHP9 1530 aa11.18□□□□□ -0.62
VIM-207ENST00000495528 POM121CA8CG34 1229 aa11.17□□□□□ -0.62
VIM-207ENST00000495528 TRAK2O60296 914 aa11.17□□□□□ -0.62
VIM-207ENST00000495528 WASHC4Q2M389 1173 aa11.17□□□□□ -0.62
VIM-207ENST00000495528 TNFRSF10AO00220 468 aa11.15□□□□□ -0.62
VIM-207ENST00000495528 FAM69CQ0P6D2 419 aa11.15□□□□□ -0.62
VIM-207ENST00000495528 MRGPRX2Q96LB1 330 aa11.15□□□□□ -0.62
VIM-207ENST00000495528 ZNF777Q9ULD5 760 aaPredicted RBP11.15□□□□□ -0.62
VIM-207ENST00000495528 PCDHB9Q9Y5E1 797 aa11.15□□□□□ -0.62
VIM-207ENST00000495528 WNT7AO00755 349 aa11.14□□□□□ -0.63
VIM-207ENST00000495528 VARSP26640 1264 aaKnown RBP11.14□□□□□ -0.63
VIM-207ENST00000495528 ARID5BQ14865 1188 aa11.14□□□□□ -0.63
VIM-207ENST00000495528 ERFEQ4G0M1 354 aa11.14□□□□□ -0.63
VIM-207ENST00000495528 FAM174AQ8TBP5 190 aa11.14□□□□□ -0.63
VIM-207ENST00000495528 PKD2L1Q9P0L9 805 aa11.14□□□□□ -0.63
VIM-207ENST00000495528 DZIP3Q86Y13 1208 aaKnown RBP11.13□□□□□ -0.63
VIM-207ENST00000495528 RGS20O76081 388 aa11.12□□□□□ -0.63
VIM-207ENST00000495528 SLC10A4Q96EP9 437 aa11.12□□□□□ -0.63
VIM-207ENST00000495528 TLL2Q9Y6L7 1015 aa11.12□□□□□ -0.63
VIM-207ENST00000495528 ARID3CA6NKF2 412 aa11.11□□□□□ -0.63
VIM-207ENST00000495528 EIF4G2P78344 907 aaKnown RBP eCLIP11.11□□□□□ -0.63
VIM-207ENST00000495528 C1QTNF2Q9BXJ5 285 aa11.11□□□□□ -0.63
VIM-207ENST00000495528 SEMA3FQ13275 785 aa11.1□□□□□ -0.63
VIM-207ENST00000495528 ABCC10Q5T3U5 1492 aa11.09□□□□□ -0.63
VIM-207ENST00000495528 IGF1RP08069 1367 aa11.09□□□□□ -0.63
VIM-207ENST00000495528 SIAH2O43255 324 aa11.09□□□□□ -0.63
VIM-207ENST00000495528 GDF9O60383 454 aa11.09□□□□□ -0.63
VIM-207ENST00000495528 TRIM67Q6ZTA4 783 aa11.09□□□□□ -0.63
VIM-207ENST00000495528 KIF13AQ9H1H9 1805 aa11.09□□□□□ -0.63
VIM-207ENST00000495528 HDGFL1Q5TGJ6 251 aa11.08□□□□□ -0.64
VIM-207ENST00000495528 TTC24A2A3L6 582 aaPredicted RBP11.07□□□□□ -0.64
VIM-207ENST00000495528 ALDH1A1P00352 501 aa11.07□□□□□ -0.64
VIM-207ENST00000495528 VASH1Q7L8A9 365 aaPredicted RBP11.07□□□□□ -0.64
VIM-207ENST00000495528 CYP4X1Q8N118 509 aa11.07□□□□□ -0.64
VIM-207ENST00000495528 RUSC2Q8N2Y8 1516 aa11.07□□□□□ -0.64
VIM-207ENST00000495528 KIAA0586Q9BVV6 1533 aa11.06□□□□□ -0.64
VIM-207ENST00000495528 RAB15P59190 212 aa11.06□□□□□ -0.64
VIM-207ENST00000495528 TRMT44Q8IYL2 757 aaKnown RBP11.06□□□□□ -0.64
VIM-207ENST00000495528 ADAMTS19Q8TE59 1207 aa11.06□□□□□ -0.64
VIM-207ENST00000495528 GLMNQ92990 594 aa11.06□□□□□ -0.64
VIM-207ENST00000495528 PDZRN3Q9UPQ7 1066 aa11.06□□□□□ -0.64
VIM-207ENST00000495528 SNIP1Q8TAD8 396 aaKnown RBP11.05□□□□□ -0.64
VIM-207ENST00000495528 CALR3Q96L12 384 aaKnown RBP11.05□□□□□ -0.64
VIM-207ENST00000495528 MAPKBP1O60336 1514 aa11.04□□□□□ -0.64
VIM-207ENST00000495528 ALG2Q9H553 416 aa11.04□□□□□ -0.64
VIM-207ENST00000495528 TTBK1Q5TCY1 1321 aaPredicted RBP11.04□□□□□ -0.64
VIM-207ENST00000495528 KIF27Q86VH2 1401 aa11.03□□□□□ -0.64
VIM-207ENST00000495528 ADCY10Q96PN6 1610 aa11.03□□□□□ -0.64
VIM-207ENST00000495528 J3QL48 77 aa11.03□□□□□ -0.64
VIM-207ENST00000495528 GIGYF1O75420 1035 aaPredicted RBP11.03□□□□□ -0.64
VIM-207ENST00000495528 SOX11P35716 441 aa11.03□□□□□ -0.64
VIM-207ENST00000495528 KCTD15Q96SI1 283 aaPredicted RBP11.03□□□□□ -0.64
VIM-207ENST00000495528 WASF2Q9Y6W5 498 aa11.03□□□□□ -0.64
VIM-207ENST00000495528 FSHRP23945 695 aa11.02□□□□□ -0.65
VIM-207ENST00000495528 NBPF20Q3BBV1 942 aa11.02□□□□□ -0.65
VIM-207ENST00000495528 CDK15Q96Q40 435 aa11.02□□□□□ -0.65
VIM-207ENST00000495528 CEP126Q9P2H0 1117 aa11.02□□□□□ -0.65
VIM-207ENST00000495528 DIP2BQ9P265 1576 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms