RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 AATKQ6ZMQ8 1374 aa18.11■□□□□ 0.49
SKA1-205ENST00000494518 TTC21BQ7Z4L5 1316 aa18.1■□□□□ 0.49
SKA1-205ENST00000494518 MON2Q7Z3U7 1717 aa18.09■□□□□ 0.49
SKA1-205ENST00000494518 CPSF1Q10570 1443 aaKnown RBP18.09■□□□□ 0.49
SKA1-205ENST00000494518 PARD3Q8TEW0 1356 aa18.09■□□□□ 0.49
SKA1-205ENST00000494518 AXIN2Q9Y2T1 843 aa18.09■□□□□ 0.49
SKA1-205ENST00000494518 OVOS2A0A0G2JMS6 1433 aa18.07■□□□□ 0.48
SKA1-205ENST00000494518 OVOS2A0A0J9YW53 1432 aa18.07■□□□□ 0.48
SKA1-205ENST00000494518 OVOS2Q6IE36 1432 aa18.07■□□□□ 0.48
SKA1-205ENST00000494518 KTN1Q86UP2 1357 aaKnown RBP18.06■□□□□ 0.48
SKA1-205ENST00000494518 DDB1Q16531 1140 aa18.06■□□□□ 0.48
SKA1-205ENST00000494518 NFAT5O94916 1531 aa18.06■□□□□ 0.48
SKA1-205ENST00000494518 WDR17Q8IZU2 1322 aa18.05■□□□□ 0.48
SKA1-205ENST00000494518 CSB-PGBD3P0DP91 1061 aa18.05■□□□□ 0.48
SKA1-205ENST00000494518 PTF1AQ7RTS3 328 aa18.05■□□□□ 0.48
SKA1-205ENST00000494518 ARHGEF25Q86VW2 580 aa18.05■□□□□ 0.48
SKA1-205ENST00000494518 KAT6BQ8WYB5 2073 aa18.05■□□□□ 0.48
SKA1-205ENST00000494518 LTN1O94822 1766 aa18.04■□□□□ 0.48
SKA1-205ENST00000494518 NBPF14Q5TI25 921 aa18.04■□□□□ 0.48
SKA1-205ENST00000494518 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.04■□□□□ 0.48
SKA1-205ENST00000494518 CNKSR2Q8WXI2 1034 aa18.04■□□□□ 0.48
SKA1-205ENST00000494518 ZNF692Q9BU19 519 aaPredicted RBP18.04■□□□□ 0.48
SKA1-205ENST00000494518 RGPD3A6NKT7 1758 aaPredicted RBP18.03■□□□□ 0.48
SKA1-205ENST00000494518 RGPD4Q7Z3J3 1758 aa18.03■□□□□ 0.48
SKA1-205ENST00000494518 TTC21AQ8NDW8 1320 aa18.02■□□□□ 0.48
SKA1-205ENST00000494518 KCNH5Q8NCM2 988 aa18.02■□□□□ 0.48
SKA1-205ENST00000494518 MARCH10Q8NA82 808 aaPredicted RBP18.01■□□□□ 0.47
SKA1-205ENST00000494518 CARD11Q9BXL7 1154 aa18.01■□□□□ 0.47
SKA1-205ENST00000494518 TMC1Q8TDI8 760 aa18■□□□□ 0.47
SKA1-205ENST00000494518 CD163L1Q9NR16 1453 aa18■□□□□ 0.47
SKA1-205ENST00000494518 USP54Q70EL1 1684 aa17.99■□□□□ 0.47
SKA1-205ENST00000494518 NME9Q86XW9 330 aa17.99■□□□□ 0.47
SKA1-205ENST00000494518 CARD10Q9BWT7 1032 aa17.99■□□□□ 0.47
SKA1-205ENST00000494518 ANO8Q9HCE9 1232 aaPredicted RBP17.98■□□□□ 0.47
SKA1-205ENST00000494518 C11orf95C9JLR9 678 aaPredicted RBP17.97■□□□□ 0.47
SKA1-205ENST00000494518 NCBP3Q53F19 620 aaKnown RBP17.97■□□□□ 0.47
SKA1-205ENST00000494518 BCL11BQ9C0K0 894 aaPredicted RBP17.97■□□□□ 0.47
SKA1-205ENST00000494518 TONSLQ96HA7 1378 aa17.96■□□□□ 0.47
SKA1-205ENST00000494518 SBNO2Q9Y2G9 1366 aa17.96■□□□□ 0.47
SKA1-205ENST00000494518 CASZ1Q86V15 1759 aa17.96■□□□□ 0.47
SKA1-205ENST00000494518 ABCC6O95255 1503 aa17.95■□□□□ 0.46
SKA1-205ENST00000494518 CDCA7Q9BWT1 371 aaPredicted RBP17.95■□□□□ 0.46
SKA1-205ENST00000494518 SLC12A5Q9H2X9 1139 aa17.95■□□□□ 0.46
SKA1-205ENST00000494518 PPP1R1BQ9UD71 204 aaPredicted RBP17.95■□□□□ 0.46
SKA1-205ENST00000494518 USP31Q70CQ4 1352 aa17.94■□□□□ 0.46
SKA1-205ENST00000494518 CCDC7Q96M83 1385 aa17.94■□□□□ 0.46
SKA1-205ENST00000494518 EXOC5O00471 708 aa17.94■□□□□ 0.46
SKA1-205ENST00000494518 PLSCR1O15162 318 aa17.94■□□□□ 0.46
SKA1-205ENST00000494518 SPON1Q9HCB6 807 aa17.94■□□□□ 0.46
SKA1-205ENST00000494518 NLRP2Q9NX02 1062 aa17.94■□□□□ 0.46
SKA1-205ENST00000494518 TNS2Q63HR2 1409 aa17.94■□□□□ 0.46
SKA1-205ENST00000494518 NHSQ6T4R5 1651 aa17.93■□□□□ 0.46
SKA1-205ENST00000494518 KCNQ2O43526 872 aa17.93■□□□□ 0.46
SKA1-205ENST00000494518 HDGFL2Q7Z4V5 671 aaPredicted RBP17.93■□□□□ 0.46
SKA1-205ENST00000494518 PDGFDQ9GZP0 370 aaPredicted RBP17.93■□□□□ 0.46
SKA1-205ENST00000494518 A0A1W2PP64 1363 aa17.92■□□□□ 0.46
SKA1-205ENST00000494518 PROM2Q8N271 834 aa17.92■□□□□ 0.46
SKA1-205ENST00000494518 ACSBG1Q96GR2 724 aa17.92■□□□□ 0.46
SKA1-205ENST00000494518 ERBB3P21860 1342 aa17.92■□□□□ 0.46
SKA1-205ENST00000494518 BTAF1O14981 1849 aa17.91■□□□□ 0.46
SKA1-205ENST00000494518 BCL9O00512 1426 aa17.9■□□□□ 0.46
SKA1-205ENST00000494518 EDC4Q6P2E9 1401 aaKnown RBP17.9■□□□□ 0.46
SKA1-205ENST00000494518 ANKRD24Q8TF21 1146 aa17.9■□□□□ 0.46
SKA1-205ENST00000494518 RGPD2P0DJD1 1756 aa17.89■□□□□ 0.45
SKA1-205ENST00000494518 ZBTB7AO95365 584 aa17.89■□□□□ 0.45
SKA1-205ENST00000494518 TXNRD1Q16881 649 aa17.89■□□□□ 0.45
SKA1-205ENST00000494518 MYOM1P52179 1685 aa17.89■□□□□ 0.45
SKA1-205ENST00000494518 TERF2IPQ9NYB0 399 aa17.88■□□□□ 0.45
SKA1-205ENST00000494518 LTV1Q96GA3 475 aaPredicted RBP17.87■□□□□ 0.45
SKA1-205ENST00000494518 IL2RBP14784 551 aa17.86■□□□□ 0.45
SKA1-205ENST00000494518 STK32BQ9NY57 414 aa17.86■□□□□ 0.45
SKA1-205ENST00000494518 ST20-MTHFSA0A0A6YYL1 179 aa17.85■□□□□ 0.45
SKA1-205ENST00000494518 FAM208AQ9UK61 1670 aaKnown RBP17.85■□□□□ 0.45
SKA1-205ENST00000494518 ATF5Q9Y2D1 282 aaPredicted RBP17.85■□□□□ 0.45
SKA1-205ENST00000494518 NINLQ9Y2I6 1382 aa17.84■□□□□ 0.45
SKA1-205ENST00000494518 FBLN1P23142 703 aa17.84■□□□□ 0.45
SKA1-205ENST00000494518 TESK2Q96S53 571 aa17.84■□□□□ 0.45
SKA1-205ENST00000494518 DCAF8L1A6NGE4 600 aa17.82■□□□□ 0.44
SKA1-205ENST00000494518 YY1P25490 414 aa17.82■□□□□ 0.44
SKA1-205ENST00000494518 SLC15A2Q16348 729 aa17.82■□□□□ 0.44
SKA1-205ENST00000494518 PAPPAQ13219 1627 aa17.82■□□□□ 0.44
SKA1-205ENST00000494518 DOT1LQ8TEK3 1739 aa17.81■□□□□ 0.44
SKA1-205ENST00000494518 IP6K1Q92551 441 aa17.81■□□□□ 0.44
SKA1-205ENST00000494518 SHANK3Q9BYB0 1731 aa17.81■□□□□ 0.44
SKA1-205ENST00000494518 PTGER2P43116 358 aa17.8■□□□□ 0.44
SKA1-205ENST00000494518 DDX54Q8TDD1 881 aaKnown RBP17.8■□□□□ 0.44
SKA1-205ENST00000494518 COG3Q96JB2 828 aa17.8■□□□□ 0.44
SKA1-205ENST00000494518 UTRNP46939 3433 aa17.8■□□□□ 0.44
SKA1-205ENST00000494518 MAP3K19Q56UN5 1328 aa17.79■□□□□ 0.44
SKA1-205ENST00000494518 PUS7Q96PZ0 661 aaKnown RBP17.79■□□□□ 0.44
SKA1-205ENST00000494518 KIF20BQ96Q89 1820 aa17.78■□□□□ 0.44
SKA1-205ENST00000494518 TUBGCP6Q96RT7 1819 aa17.78■□□□□ 0.44
SKA1-205ENST00000494518 AMPHP49418 695 aa17.78■□□□□ 0.44
SKA1-205ENST00000494518 HOXC9P31274 260 aa17.77■□□□□ 0.44
SKA1-205ENST00000494518 ZNF827Q17R98 1081 aa17.77■□□□□ 0.44
SKA1-205ENST00000494518 LRRC4BQ9NT99 713 aa17.76■□□□□ 0.43
SKA1-205ENST00000494518 RNF216Q9NWF9 866 aaPredicted RBP17.76■□□□□ 0.43
SKA1-205ENST00000494518 ANKRD36BQ8N2N9 1353 aa17.76■□□□□ 0.43
SKA1-205ENST00000494518 RRS1Q15050 365 aaKnown RBP17.75■□□□□ 0.43
SKA1-205ENST00000494518 SYTL4Q96C24 671 aaPredicted RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms