RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 ZBED9Q6R2W3 1325 aa16.9■□□□□ 0.3
VPS52-220ENST00000493674 IL13P35225 146 aa16.89■□□□□ 0.29
VPS52-220ENST00000493674 HNRNPUQ00839 825 aaKnown RBP eCLIP16.89■□□□□ 0.29
VPS52-220ENST00000493674 GCP02774 474 aa16.88■□□□□ 0.29
VPS52-220ENST00000493674 CPDO75976 1380 aa16.88■□□□□ 0.29
VPS52-220ENST00000493674 NCAPD2Q15021 1401 aa16.87■□□□□ 0.29
VPS52-220ENST00000493674 HOXC9P31274 260 aa16.86■□□□□ 0.29
VPS52-220ENST00000493674 ARHGEF25Q86VW2 580 aa16.86■□□□□ 0.29
VPS52-220ENST00000493674 NUDCQ9Y266 331 aa16.86■□□□□ 0.29
VPS52-220ENST00000493674 SPATA31A6Q5VVP1 1343 aa16.86■□□□□ 0.29
VPS52-220ENST00000493674 COL14A1Q05707 1796 aaKnown RBP16.86■□□□□ 0.29
VPS52-220ENST00000493674 PPM1GO15355 546 aaPredicted RBP16.85■□□□□ 0.29
VPS52-220ENST00000493674 EIF4A2Q14240 407 aaKnown RBP16.85■□□□□ 0.29
VPS52-220ENST00000493674 HSP90AB2PQ58FF8 381 aa16.85■□□□□ 0.29
VPS52-220ENST00000493674 LRRC59Q96AG4 307 aaKnown RBP16.85■□□□□ 0.29
VPS52-220ENST00000493674 PLCH1Q4KWH8 1693 aa16.85■□□□□ 0.29
VPS52-220ENST00000493674 SOX12O15370 315 aa16.84■□□□□ 0.29
VPS52-220ENST00000493674 IP6K1Q92551 441 aa16.84■□□□□ 0.29
VPS52-220ENST00000493674 KDRP35968 1356 aa16.84■□□□□ 0.29
VPS52-220ENST00000493674 LMOD2Q6P5Q4 547 aa16.83■□□□□ 0.28
VPS52-220ENST00000493674 WNK3Q9BYP7 1800 aa16.83■□□□□ 0.28
VPS52-220ENST00000493674 NRAPQ86VF7 1730 aa16.82■□□□□ 0.28
VPS52-220ENST00000493674 U2AF1L5P0DN76 240 aaPredicted RBP16.82■□□□□ 0.28
VPS52-220ENST00000493674 AMPHP49418 695 aa16.82■□□□□ 0.28
VPS52-220ENST00000493674 U2AF1Q01081 240 aaKnown RBP eCLIP16.82■□□□□ 0.283e-7■■□□□ 12.8
VPS52-220ENST00000493674 PLEKHF1Q96S99 279 aa16.82■□□□□ 0.28
VPS52-220ENST00000493674 RSPH6AQ9H0K4 717 aa16.82■□□□□ 0.28
VPS52-220ENST00000493674 NWD2Q9ULI1 1742 aa16.82■□□□□ 0.28
VPS52-220ENST00000493674 LRP6O75581 1613 aa16.81■□□□□ 0.28
VPS52-220ENST00000493674 IGSF1Q8N6C5 1336 aa16.81■□□□□ 0.28
VPS52-220ENST00000493674 CENPBP07199 599 aaPredicted RBP16.81■□□□□ 0.28
VPS52-220ENST00000493674 NCBP3Q53F19 620 aaKnown RBP16.81■□□□□ 0.28
VPS52-220ENST00000493674 RUNDC1Q96C34 613 aa16.81■□□□□ 0.28
VPS52-220ENST00000493674 U2SURPO15042 1029 aaKnown RBP16.8■□□□□ 0.28
VPS52-220ENST00000493674 FCHSD2O94868 740 aa16.8■□□□□ 0.28
VPS52-220ENST00000493674 PKD1L3Q7Z443 1732 aa16.79■□□□□ 0.28
VPS52-220ENST00000493674 ZNF521Q96K83 1311 aa16.79■□□□□ 0.28
VPS52-220ENST00000493674 CCDC146Q8IYE0 955 aa16.79■□□□□ 0.28
VPS52-220ENST00000493674 NGEFQ8N5V2 710 aa16.79■□□□□ 0.28
VPS52-220ENST00000493674 CABLES1Q8TDN4 633 aa16.79■□□□□ 0.28
VPS52-220ENST00000493674 KIAA0232Q92628 1395 aa16.78■□□□□ 0.28
VPS52-220ENST00000493674 PHF23Q9BUL5 403 aaPredicted RBP16.78■□□□□ 0.28
VPS52-220ENST00000493674 PARP4Q9UKK3 1724 aaKnown RBP16.78■□□□□ 0.28
VPS52-220ENST00000493674 LRRC37A3O60309 1634 aa16.78■□□□□ 0.28
VPS52-220ENST00000493674 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.76■□□□□ 0.27
VPS52-220ENST00000493674 APAF1O14727 1248 aa16.76■□□□□ 0.27
VPS52-220ENST00000493674 PNNQ9H307 717 aaKnown RBP16.76■□□□□ 0.27
VPS52-220ENST00000493674 SHANK3Q9BYB0 1731 aa16.76■□□□□ 0.27
VPS52-220ENST00000493674 TCP11L2Q8N4U5 519 aa16.75■□□□□ 0.27
VPS52-220ENST00000493674 EYA1Q99502 592 aa16.75■□□□□ 0.27
VPS52-220ENST00000493674 AXIN2Q9Y2T1 843 aa16.75■□□□□ 0.27
VPS52-220ENST00000493674 ADAMTS7Q9UKP4 1686 aa16.75■□□□□ 0.27
VPS52-220ENST00000493674 COL5A2P05997 1499 aaPredicted RBP16.74■□□□□ 0.27
VPS52-220ENST00000493674 ERBB3P21860 1342 aa16.74■□□□□ 0.27
VPS52-220ENST00000493674 PRKAR2BP31323 418 aa16.74■□□□□ 0.27
VPS52-220ENST00000493674 ZC3H6P61129 1189 aaKnown RBP16.74■□□□□ 0.27
VPS52-220ENST00000493674 AEBP1Q8IUX7 1158 aa16.74■□□□□ 0.27
VPS52-220ENST00000493674 HMOX1P09601 288 aa16.73■□□□□ 0.27
VPS52-220ENST00000493674 CCDC27Q2M243 656 aa16.73■□□□□ 0.27
VPS52-220ENST00000493674 SIPA1L3O60292 1781 aaPredicted RBP16.72■□□□□ 0.27
VPS52-220ENST00000493674 SCN11AQ9UI33 1791 aa16.72■□□□□ 0.27
VPS52-220ENST00000493674 PDE3BQ13370 1112 aa16.72■□□□□ 0.27
VPS52-220ENST00000493674 SULT6B1Q6IMI4 303 aa16.72■□□□□ 0.27
VPS52-220ENST00000493674 PLEKHG2Q9H7P9 1386 aa16.72■□□□□ 0.27
VPS52-220ENST00000493674 MAPK8IP3Q9UPT6 1336 aa16.71■□□□□ 0.27
VPS52-220ENST00000493674 SENP3-EIF4A1A0A087X0R7 540 aa16.7■□□□□ 0.26
VPS52-220ENST00000493674 PLEKHG5O94827 1062 aa16.7■□□□□ 0.26
VPS52-220ENST00000493674 TMPOP42166 694 aaKnown RBP16.7■□□□□ 0.26
VPS52-220ENST00000493674 NBPF6Q5VWK0 638 aa16.7■□□□□ 0.26
VPS52-220ENST00000493674 ANKRD24Q8TF21 1146 aa16.7■□□□□ 0.26
VPS52-220ENST00000493674 PHACTR3Q96KR7 559 aa16.7■□□□□ 0.26
VPS52-220ENST00000493674 NBPF4Q96M43 638 aa16.7■□□□□ 0.26
VPS52-220ENST00000493674 MEX3CQ5U5Q3 659 aaKnown RBP16.69■□□□□ 0.26
VPS52-220ENST00000493674 ZBTB7CA1YPR0 619 aa16.68■□□□□ 0.26
VPS52-220ENST00000493674 CHRNA2Q15822 529 aa16.68■□□□□ 0.26
VPS52-220ENST00000493674 NFE2L2Q16236 605 aa16.68■□□□□ 0.26
VPS52-220ENST00000493674 WWC1Q8IX03 1113 aa16.68■□□□□ 0.26
VPS52-220ENST00000493674 LTV1Q96GA3 475 aaPredicted RBP16.68■□□□□ 0.26
VPS52-220ENST00000493674 PRDM11Q9NQV5 511 aa16.68■□□□□ 0.26
VPS52-220ENST00000493674 TRIM35Q9UPQ4 493 aa16.67■□□□□ 0.26
VPS52-220ENST00000493674 TRMT2AQ8IZ69 625 aaKnown RBP16.66■□□□□ 0.26
VPS52-220ENST00000493674 RRP7AQ9Y3A4 280 aaKnown RBP16.66■□□□□ 0.26
VPS52-220ENST00000493674 SALL2Q9Y467 1007 aaPredicted RBP16.66■□□□□ 0.26
VPS52-220ENST00000493674 WDR17Q8IZU2 1322 aa16.66■□□□□ 0.26
VPS52-220ENST00000493674 KDM3BQ7LBC6 1761 aa16.65■□□□□ 0.26
VPS52-220ENST00000493674 NUTM2BA6NNL0 878 aaPredicted RBP16.65■□□□□ 0.26
VPS52-220ENST00000493674 NUTM2EB1AL46 878 aaPredicted RBP16.65■□□□□ 0.26
VPS52-220ENST00000493674 HAP1P54257 671 aaPredicted RBP16.65■□□□□ 0.26
VPS52-220ENST00000493674 NUTM2AQ8IVF1 878 aaPredicted RBP16.65■□□□□ 0.26
VPS52-220ENST00000493674 MEGF6O75095 1541 aa16.65■□□□□ 0.26
VPS52-220ENST00000493674 SLIT2O94813 1529 aa16.65■□□□□ 0.26
VPS52-220ENST00000493674 FAM83GA6ND36 823 aa16.64■□□□□ 0.25
VPS52-220ENST00000493674 NEFMP07197 916 aa16.64■□□□□ 0.25
VPS52-220ENST00000493674 WDR63Q8IWG1 891 aa16.64■□□□□ 0.25
VPS52-220ENST00000493674 GOLGA2Q08379 1002 aa16.63■□□□□ 0.25
VPS52-220ENST00000493674 SLFN5Q08AF3 891 aa16.63■□□□□ 0.25
VPS52-220ENST00000493674 ZNF772Q68DY9 489 aaPredicted RBP16.63■□□□□ 0.25
VPS52-220ENST00000493674 USHBP1Q8N6Y0 703 aa16.63■□□□□ 0.25
VPS52-220ENST00000493674 CDCA7LQ96GN5 454 aa16.63■□□□□ 0.25
VPS52-220ENST00000493674 RIPK4P57078 832 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 196.1 ms