RNA–Protein interactions for RNA: ENST00000493256.1

LYSMD4-208, Transcript of LysM domain containing 4, humanhuman

TSL 3

Gene LYSMD4, Length 880 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4-208ENST00000493256 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.38■■■□□ 2.61
LYSMD4-208ENST00000493256 WDR17Q8IZU2 1322 aa31.38■■■□□ 2.61
LYSMD4-208ENST00000493256 CAMKK2Q96RR4 588 aa31.37■■■□□ 2.61
LYSMD4-208ENST00000493256 SLC12A5Q9H2X9 1139 aa31.37■■■□□ 2.61
LYSMD4-208ENST00000493256 USP31Q70CQ4 1352 aa31.36■■■□□ 2.61
LYSMD4-208ENST00000493256 APBA3O96018 575 aa31.36■■■□□ 2.61
LYSMD4-208ENST00000493256 USP54Q70EL1 1684 aa31.35■■■□□ 2.61
LYSMD4-208ENST00000493256 LRRC37A3O60309 1634 aa31.35■■■□□ 2.61
LYSMD4-208ENST00000493256 WNK3Q9BYP7 1800 aa31.34■■■□□ 2.61
LYSMD4-208ENST00000493256 NME9Q86XW9 330 aa31.34■■■□□ 2.61
LYSMD4-208ENST00000493256 HDGFL2Q7Z4V5 671 aaPredicted RBP31.33■■■□□ 2.61
LYSMD4-208ENST00000493256 PUS7Q96PZ0 661 aaKnown RBP31.32■■■□□ 2.6
LYSMD4-208ENST00000493256 TESK2Q96S53 571 aa31.32■■■□□ 2.6
LYSMD4-208ENST00000493256 PEAK1Q9H792 1746 aa31.32■■■□□ 2.6
LYSMD4-208ENST00000493256 LRP5O75197 1615 aa31.31■■■□□ 2.6
LYSMD4-208ENST00000493256 ABCC6O95255 1503 aa31.31■■■□□ 2.6
LYSMD4-208ENST00000493256 ST20-MTHFSA0A0A6YYL1 179 aa31.31■■■□□ 2.6
LYSMD4-208ENST00000493256 EDC4Q6P2E9 1401 aaKnown RBP31.31■■■□□ 2.6
LYSMD4-208ENST00000493256 A0A1W2PP64 1363 aa31.3■■■□□ 2.6
LYSMD4-208ENST00000493256 PARD3Q8TEW0 1356 aa31.3■■■□□ 2.6
LYSMD4-208ENST00000493256 OVOS2A0A0G2JMS6 1433 aa31.3■■■□□ 2.6
LYSMD4-208ENST00000493256 OVOS2A0A0J9YW53 1432 aa31.3■■■□□ 2.6
LYSMD4-208ENST00000493256 OVOS2Q6IE36 1432 aa31.3■■■□□ 2.6
LYSMD4-208ENST00000493256 CSB-PGBD3P0DP91 1061 aa31.29■■■□□ 2.6
LYSMD4-208ENST00000493256 DDB1Q16531 1140 aa31.29■■■□□ 2.6
LYSMD4-208ENST00000493256 R3HDM1Q15032 1099 aaKnown RBP31.28■■■□□ 2.6
LYSMD4-208ENST00000493256 CARD10Q9BWT7 1032 aa31.28■■■□□ 2.6
LYSMD4-208ENST00000493256 TERF2IPQ9NYB0 399 aa31.28■■■□□ 2.6
LYSMD4-208ENST00000493256 RREB1Q92766 1687 aa31.27■■■□□ 2.6
LYSMD4-208ENST00000493256 C11orf95C9JLR9 678 aaPredicted RBP31.26■■■□□ 2.59
LYSMD4-208ENST00000493256 CDCA7Q9BWT1 371 aaPredicted RBP31.25■■■□□ 2.59
LYSMD4-208ENST00000493256 LTN1O94822 1766 aa31.24■■■□□ 2.59
LYSMD4-208ENST00000493256 SBF2Q86WG5 1849 aa31.24■■■□□ 2.59
LYSMD4-208ENST00000493256 NUP188Q5SRE5 1749 aa31.23■■■□□ 2.59
LYSMD4-208ENST00000493256 NINLQ9Y2I6 1382 aa31.22■■■□□ 2.59
LYSMD4-208ENST00000493256 CCDC7Q96M83 1385 aa31.21■■■□□ 2.59
LYSMD4-208ENST00000493256 MARCH10Q8NA82 808 aaPredicted RBP31.21■■■□□ 2.59
LYSMD4-208ENST00000493256 SLC24A1O60721 1099 aa31.19■■■□□ 2.58
LYSMD4-208ENST00000493256 ERBB3P21860 1342 aa31.19■■■□□ 2.58
LYSMD4-208ENST00000493256 USP47Q96K76 1375 aa31.17■■■□□ 2.58
LYSMD4-208ENST00000493256 BCL9O00512 1426 aa31.15■■■□□ 2.58
LYSMD4-208ENST00000493256 PTF1AQ7RTS3 328 aa31.15■■■□□ 2.58
LYSMD4-208ENST00000493256 RGPD3A6NKT7 1758 aaPredicted RBP31.13■■■□□ 2.57
LYSMD4-208ENST00000493256 RGPD4Q7Z3J3 1758 aa31.13■■■□□ 2.57
LYSMD4-208ENST00000493256 EXOC5O00471 708 aa31.13■■■□□ 2.57
LYSMD4-208ENST00000493256 BCL11BQ9C0K0 894 aaPredicted RBP31.13■■■□□ 2.57
LYSMD4-208ENST00000493256 NLRP2Q9NX02 1062 aa31.13■■■□□ 2.57
LYSMD4-208ENST00000493256 TNS2Q63HR2 1409 aa31.13■■■□□ 2.57
LYSMD4-208ENST00000493256 ANKRD24Q8TF21 1146 aa31.12■■■□□ 2.57
LYSMD4-208ENST00000493256 NBPF14Q5TI25 921 aa31.11■■■□□ 2.57
LYSMD4-208ENST00000493256 ANKRD36BQ8N2N9 1353 aa31.11■■■□□ 2.57
LYSMD4-208ENST00000493256 PLSCR1O15162 318 aa31.1■■■□□ 2.57
LYSMD4-208ENST00000493256 TMF1P82094 1093 aa31.09■■■□□ 2.57
LYSMD4-208ENST00000493256 COG3Q96JB2 828 aa31.07■■■□□ 2.56
LYSMD4-208ENST00000493256 IP6K1Q92551 441 aa31.06■■■□□ 2.56
LYSMD4-208ENST00000493256 IL2RBP14784 551 aa31.05■■■□□ 2.56
LYSMD4-208ENST00000493256 MAP3K19Q56UN5 1328 aa31.02■■■□□ 2.56
LYSMD4-208ENST00000493256 FBLN1P23142 703 aa31.01■■■□□ 2.55
LYSMD4-208ENST00000493256 TIMELESSQ9UNS1 1208 aa31.01■■■□□ 2.55
LYSMD4-208ENST00000493256 FAM208AQ9UK61 1670 aaKnown RBP31■■■□□ 2.55
LYSMD4-208ENST00000493256 PROM2Q8N271 834 aa31■■■□□ 2.55
LYSMD4-208ENST00000493256 LTV1Q96GA3 475 aaPredicted RBP31■■■□□ 2.55
LYSMD4-208ENST00000493256 PCGF6Q9BYE7 350 aa31■■■□□ 2.55
LYSMD4-208ENST00000493256 CLSPNQ9HAW4 1339 aa30.99■■■□□ 2.55
LYSMD4-208ENST00000493256 KCNQ2O43526 872 aa30.99■■■□□ 2.55
LYSMD4-208ENST00000493256 ANO8Q9HCE9 1232 aaPredicted RBP30.99■■■□□ 2.55
LYSMD4-208ENST00000493256 NHSQ6T4R5 1651 aa30.99■■■□□ 2.55
LYSMD4-208ENST00000493256 FYB1O15117 783 aa30.97■■■□□ 2.55
LYSMD4-208ENST00000493256 HOXC9P31274 260 aa30.97■■■□□ 2.55
LYSMD4-208ENST00000493256 CDCA8Q53HL2 280 aa30.97■■■□□ 2.55
LYSMD4-208ENST00000493256 AMPHP49418 695 aa30.96■■■□□ 2.55
LYSMD4-208ENST00000493256 GGNBP2Q9H3C7 697 aa30.96■■■□□ 2.55
LYSMD4-208ENST00000493256 ACSBG1Q96GR2 724 aa30.95■■■□□ 2.55
LYSMD4-208ENST00000493256 MYOM1P52179 1685 aa30.93■■■□□ 2.54
LYSMD4-208ENST00000493256 RRS1Q15050 365 aaKnown RBP30.92■■■□□ 2.54
LYSMD4-208ENST00000493256 TXNRD1Q16881 649 aa30.92■■■□□ 2.54
LYSMD4-208ENST00000493256 RTL1A6NKG5 1358 aa30.92■■■□□ 2.54
LYSMD4-208ENST00000493256 KIF20BQ96Q89 1820 aa30.91■■■□□ 2.54
LYSMD4-208ENST00000493256 RGPD2P0DJD1 1756 aa30.91■■■□□ 2.54
LYSMD4-208ENST00000493256 SPON1Q9HCB6 807 aa30.89■■■□□ 2.54
LYSMD4-208ENST00000493256 KAT6BQ8WYB5 2073 aa30.89■■■□□ 2.54
LYSMD4-208ENST00000493256 CASZ1Q86V15 1759 aa30.88■■■□□ 2.53
LYSMD4-208ENST00000493256 BTAF1O14981 1849 aa30.88■■■□□ 2.53
LYSMD4-208ENST00000493256 CARD14Q9BXL6 1004 aa30.87■■■□□ 2.53
LYSMD4-208ENST00000493256 DDX54Q8TDD1 881 aaKnown RBP30.86■■■□□ 2.53
LYSMD4-208ENST00000493256 NSD3Q9BZ95 1437 aa30.84■■■□□ 2.53
LYSMD4-208ENST00000493256 PDGFDQ9GZP0 370 aaPredicted RBP30.84■■■□□ 2.53
LYSMD4-208ENST00000493256 MEGF6O75095 1541 aa30.83■■■□□ 2.53
LYSMD4-208ENST00000493256 STK32BQ9NY57 414 aa30.83■■■□□ 2.53
LYSMD4-208ENST00000493256 NBPF6Q5VWK0 638 aa30.81■■■□□ 2.52
LYSMD4-208ENST00000493256 NBPF4Q96M43 638 aa30.81■■■□□ 2.52
LYSMD4-208ENST00000493256 SHANK3Q9BYB0 1731 aa30.81■■■□□ 2.52
LYSMD4-208ENST00000493256 SLC15A2Q16348 729 aa30.8■■■□□ 2.52
LYSMD4-208ENST00000493256 PPP1R1BQ9UD71 204 aaPredicted RBP30.79■■■□□ 2.52
LYSMD4-208ENST00000493256 SMG6Q86US8 1419 aaKnown RBP30.79■■■□□ 2.52
LYSMD4-208ENST00000493256 PAPPAQ13219 1627 aa30.78■■■□□ 2.52
LYSMD4-208ENST00000493256 USHBP1Q8N6Y0 703 aa30.78■■■□□ 2.52
LYSMD4-208ENST00000493256 INSRP06213 1382 aa30.78■■■□□ 2.52
LYSMD4-208ENST00000493256 HSP90AB2PQ58FF8 381 aa30.77■■■□□ 2.52
LYSMD4-208ENST00000493256 ZCRB1Q8TBF4 217 aaKnown RBP30.77■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms