RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 MPNDQ8N594 471 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 UPF1Q92900 1129 aaKnown RBP eCLIP5.38□□□□□ -1.55
BRCA1-220ENST00000492859 SLC34A2O95436 690 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 RECKO95980 971 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 RFX1P22670 979 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 TCEAL1Q15170 157 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 CCDC144BQ3MJ40 725 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 CEP126Q9P2H0 1117 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 PRDM4Q9UKN5 801 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 PDZRN3Q9UPQ7 1066 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 AXIN2Q9Y2T1 843 aa5.38□□□□□ -1.55
BRCA1-220ENST00000492859 IBSPP21815 317 aaPredicted RBP5.37□□□□□ -1.55
BRCA1-220ENST00000492859 POU5F1Q01860 360 aaKnown RBP5.37□□□□□ -1.55
BRCA1-220ENST00000492859 MTA1Q13330 715 aa5.37□□□□□ -1.55
BRCA1-220ENST00000492859 PPP1R15BQ5SWA1 713 aa5.37□□□□□ -1.55
BRCA1-220ENST00000492859 ZCRB1Q8TBF4 217 aaKnown RBP5.37□□□□□ -1.55
BRCA1-220ENST00000492859 GLMNQ92990 594 aa5.37□□□□□ -1.55
BRCA1-220ENST00000492859 LARP6Q9BRS8 491 aaKnown RBP5.37□□□□□ -1.55
BRCA1-220ENST00000492859 PIF1Q9H611 641 aa5.37□□□□□ -1.55
BRCA1-220ENST00000492859 CUEDC1Q9NWM3 386 aaPredicted RBP5.37□□□□□ -1.55
BRCA1-220ENST00000492859 G3BP2Q9UN86 482 aaKnown RBP5.37□□□□□ -1.55
BRCA1-220ENST00000492859 TMEM88BA6NKF7 163 aa5.36□□□□□ -1.55
BRCA1-220ENST00000492859 POM121CA8CG34 1229 aa5.36□□□□□ -1.55
BRCA1-220ENST00000492859 XPCQ01831 940 aaPredicted RBP5.36□□□□□ -1.55
BRCA1-220ENST00000492859 CC2D1BQ5T0F9 858 aaKnown RBP5.36□□□□□ -1.55
BRCA1-220ENST00000492859 PCGF5Q86SE9 256 aa5.36□□□□□ -1.55
BRCA1-220ENST00000492859 ANKRD23Q86SG2 305 aa5.36□□□□□ -1.55
BRCA1-220ENST00000492859 C1orf131Q8NDD1 294 aaKnown RBP5.36□□□□□ -1.55
BRCA1-220ENST00000492859 PTCD2Q8WV60 388 aaKnown RBP5.36□□□□□ -1.55
BRCA1-220ENST00000492859 INO80BQ9C086 356 aaPredicted RBP5.36□□□□□ -1.55
BRCA1-220ENST00000492859 BRINP2Q9C0B6 783 aa5.36□□□□□ -1.55
BRCA1-220ENST00000492859 TCERG1O14776 1098 aaKnown RBP5.35□□□□□ -1.55
BRCA1-220ENST00000492859 FAM200BP0CF97 657 aa5.35□□□□□ -1.55
BRCA1-220ENST00000492859 AMHR2Q16671 573 aa5.35□□□□□ -1.55
BRCA1-220ENST00000492859 HSP90AB3PQ58FF7 597 aa5.35□□□□□ -1.55
BRCA1-220ENST00000492859 RPUSD2Q8IZ73 545 aaKnown RBP5.35□□□□□ -1.55
BRCA1-220ENST00000492859 ZNF687Q8N1G0 1237 aa5.35□□□□□ -1.55
BRCA1-220ENST00000492859 SNRNP27Q8WVK2 155 aaKnown RBP5.35□□□□□ -1.55
BRCA1-220ENST00000492859 SPC25Q9HBM1 224 aa5.35□□□□□ -1.55
BRCA1-220ENST00000492859 EMILIN3Q9NT22 766 aa5.35□□□□□ -1.55
BRCA1-220ENST00000492859 CTDP1Q9Y5B0 961 aaPredicted RBP5.35□□□□□ -1.55
BRCA1-220ENST00000492859 ERCC5P28715 1186 aaPredicted RBP5.34□□□□□ -1.55
BRCA1-220ENST00000492859 CFAP70Q5T0N1 1121 aa5.34□□□□□ -1.55
BRCA1-220ENST00000492859 OXER1Q8TDS5 423 aa5.34□□□□□ -1.55
BRCA1-220ENST00000492859 STAG1Q8WVM7 1258 aa5.34□□□□□ -1.55
BRCA1-220ENST00000492859 DHX38Q92620 1227 aaKnown RBP5.34□□□□□ -1.55
BRCA1-220ENST00000492859 PAGR1Q9BTK6 254 aa5.34□□□□□ -1.55
BRCA1-220ENST00000492859 TANGO6Q9C0B7 1094 aa5.34□□□□□ -1.55
BRCA1-220ENST00000492859 PUF60Q9UHX1 559 aaKnown RBP5.34□□□□□ -1.55
BRCA1-220ENST00000492859 SPDYE5A6NIY4 337 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 VDRP11473 427 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 MLLT3P42568 568 aaPredicted RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 CALD1Q05682 793 aaKnown RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 RGL3Q3MIN7 710 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 NBPF6Q5VWK0 638 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 NBPF10Q6P3W6 841 aaKnown RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 NBPF5PQ86XG9 351 aaPredicted RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 NT5DC4Q86YG4 428 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 TTC30BQ8N4P2 665 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 ZNF513Q8N8E2 541 aaPredicted RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 ENOX1Q8TC92 643 aaKnown RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 NBPF4Q96M43 638 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 COL4A3BPQ9Y5P4 624 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 MARSP56192 900 aaKnown RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 TAGLNQ01995 201 aaKnown RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 NEXNQ0ZGT2 675 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 HSP90AA2PQ14568 343 aaPredicted RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 FMNL3Q8IVF7 1028 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 PDILTQ8N807 584 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 IL17RAQ96F46 866 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 DDX27Q96GQ7 796 aaKnown RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 ZNF512BQ96KM6 892 aaPredicted RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 CEP63Q96MT8 703 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 EPAS1Q99814 870 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 RSPH9Q9H1X1 276 aaPredicted RBP5.33□□□□□ -1.56
BRCA1-220ENST00000492859 SNRKQ9NRH2 765 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 SFMBT1Q9UHJ3 866 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 KLF15Q9UIH9 416 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 SCINQ9Y6U3 715 aa5.33□□□□□ -1.56
BRCA1-220ENST00000492859 ATG7O95352 703 aa5.32□□□□□ -1.56
BRCA1-220ENST00000492859 PDE4AP27815 886 aa5.32□□□□□ -1.56
BRCA1-220ENST00000492859 HDLBPQ00341 1268 aaKnown RBP5.32□□□□□ -1.56
BRCA1-220ENST00000492859 SF3B2Q13435 895 aaKnown RBP5.32□□□□□ -1.56
BRCA1-220ENST00000492859 MFSD10Q14728 455 aa5.32□□□□□ -1.56
BRCA1-220ENST00000492859 ANKRD13DQ6ZTN6 518 aa5.32□□□□□ -1.56
BRCA1-220ENST00000492859 PIK3R5Q8WYR1 880 aa5.32□□□□□ -1.56
BRCA1-220ENST00000492859 TRIM34Q9BYJ4 488 aa5.32□□□□□ -1.56
BRCA1-220ENST00000492859 PCDH12Q9NPG4 1184 aa5.32□□□□□ -1.56
BRCA1-220ENST00000492859 SYNPO2Q9UMS6 1093 aa5.32□□□□□ -1.56
BRCA1-220ENST00000492859 GPR37O15354 613 aa5.31□□□□□ -1.56
BRCA1-220ENST00000492859 PRC1O43663 620 aa5.31□□□□□ -1.56
BRCA1-220ENST00000492859 HSP90AA1P07900 732 aaKnown RBP5.31□□□□□ -1.56
BRCA1-220ENST00000492859 CT47B1P0C2W7 299 aaPredicted RBP5.31□□□□□ -1.56
BRCA1-220ENST00000492859 MS4A1P11836 297 aa5.31□□□□□ -1.56
BRCA1-220ENST00000492859 CD53P19397 219 aa5.31□□□□□ -1.56
BRCA1-220ENST00000492859 TDO2P48775 406 aa5.31□□□□□ -1.56
BRCA1-220ENST00000492859 PSEN2P49810 448 aa5.31□□□□□ -1.56
BRCA1-220ENST00000492859 BMS1Q14692 1282 aaKnown RBP5.31□□□□□ -1.56
BRCA1-220ENST00000492859 SH3D19Q5HYK7 790 aa5.31□□□□□ -1.56
BRCA1-220ENST00000492859 PROCA1Q8NCQ7 364 aaPredicted RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms