RNA–Protein interactions for RNA: ENST00000492851.1

COL6A1-205, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 435 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-205ENST00000492851 PIK3C2AO00443 1686 aa17.55■□□□□ 0.4
COL6A1-205ENST00000492851 EZH2Q15910 746 aaKnown RBP17.55■□□□□ 0.4
COL6A1-205ENST00000492851 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.55■□□□□ 0.4
COL6A1-205ENST00000492851 CARD10Q9BWT7 1032 aa17.55■□□□□ 0.4
COL6A1-205ENST00000492851 SOX12O15370 315 aa17.54■□□□□ 0.4
COL6A1-205ENST00000492851 SLC12A5Q9H2X9 1139 aa17.54■□□□□ 0.4
COL6A1-205ENST00000492851 NINLQ9Y2I6 1382 aa17.53■□□□□ 0.4
COL6A1-205ENST00000492851 AKAP12Q02952 1782 aa17.53■□□□□ 0.4
COL6A1-205ENST00000492851 NBPF14Q5TI25 921 aa17.53■□□□□ 0.4
COL6A1-205ENST00000492851 ST20-MTHFSA0A0A6YYL1 179 aa17.52■□□□□ 0.4
COL6A1-205ENST00000492851 PSDA5PKW4 1024 aaPredicted RBP17.52■□□□□ 0.4
COL6A1-205ENST00000492851 OVOS2A0A0G2JMS6 1433 aa17.52■□□□□ 0.4
COL6A1-205ENST00000492851 OVOS2A0A0J9YW53 1432 aa17.52■□□□□ 0.4
COL6A1-205ENST00000492851 OVOS2Q6IE36 1432 aa17.52■□□□□ 0.4
COL6A1-205ENST00000492851 CCDC7Q96M83 1385 aa17.52■□□□□ 0.39
COL6A1-205ENST00000492851 EXOC5O00471 708 aa17.51■□□□□ 0.39
COL6A1-205ENST00000492851 EDC4Q6P2E9 1401 aaKnown RBP17.51■□□□□ 0.39
COL6A1-205ENST00000492851 TIMELESSQ9UNS1 1208 aa17.51■□□□□ 0.39
COL6A1-205ENST00000492851 ABCC6O95255 1503 aa17.51■□□□□ 0.39
COL6A1-205ENST00000492851 SRCAPQ6ZRS2 3230 aa17.5■□□□□ 0.39
COL6A1-205ENST00000492851 R3HDM1Q15032 1099 aaKnown RBP17.5■□□□□ 0.39
COL6A1-205ENST00000492851 NME9Q86XW9 330 aa17.5■□□□□ 0.39
COL6A1-205ENST00000492851 TESK2Q96S53 571 aa17.5■□□□□ 0.39
COL6A1-205ENST00000492851 PARP4Q9UKK3 1724 aaKnown RBP17.5■□□□□ 0.39
COL6A1-205ENST00000492851 COL18A1P39060 1754 aa17.49■□□□□ 0.39
COL6A1-205ENST00000492851 PLSCR1O15162 318 aa17.49■□□□□ 0.39
COL6A1-205ENST00000492851 CD163L1Q9NR16 1453 aa17.49■□□□□ 0.39
COL6A1-205ENST00000492851 TNS1Q9HBL0 1735 aaKnown RBP17.48■□□□□ 0.39
COL6A1-205ENST00000492851 TMF1P82094 1093 aa17.48■□□□□ 0.39
COL6A1-205ENST00000492851 CDCA8Q53HL2 280 aa17.48■□□□□ 0.39
COL6A1-205ENST00000492851 BCL11BQ9C0K0 894 aaPredicted RBP17.48■□□□□ 0.39
COL6A1-205ENST00000492851 NFAT5O94916 1531 aa17.47■□□□□ 0.39
COL6A1-205ENST00000492851 MON2Q7Z3U7 1717 aa17.47■□□□□ 0.39
COL6A1-205ENST00000492851 BCL9O00512 1426 aa17.47■□□□□ 0.39
COL6A1-205ENST00000492851 A0A1W2PP64 1363 aa17.46■□□□□ 0.39
COL6A1-205ENST00000492851 MARCH10Q8NA82 808 aaPredicted RBP17.45■□□□□ 0.38
COL6A1-205ENST00000492851 COG3Q96JB2 828 aa17.45■□□□□ 0.38
COL6A1-205ENST00000492851 NLRP2Q9NX02 1062 aa17.45■□□□□ 0.38
COL6A1-205ENST00000492851 ERBB3P21860 1342 aa17.45■□□□□ 0.38
COL6A1-205ENST00000492851 CLSPNQ9HAW4 1339 aa17.45■□□□□ 0.38
COL6A1-205ENST00000492851 LRP5O75197 1615 aa17.44■□□□□ 0.38
COL6A1-205ENST00000492851 ANKRD24Q8TF21 1146 aa17.43■□□□□ 0.38
COL6A1-205ENST00000492851 IP6K1Q92551 441 aa17.43■□□□□ 0.38
COL6A1-205ENST00000492851 USP54Q70EL1 1684 aa17.42■□□□□ 0.38
COL6A1-205ENST00000492851 IL2RBP14784 551 aa17.42■□□□□ 0.38
COL6A1-205ENST00000492851 LRRC37A3O60309 1634 aa17.41■□□□□ 0.38
COL6A1-205ENST00000492851 ANKRD36BQ8N2N9 1353 aa17.4■□□□□ 0.38
COL6A1-205ENST00000492851 USP47Q96K76 1375 aa17.4■□□□□ 0.38
COL6A1-205ENST00000492851 PEAK1Q9H792 1746 aa17.39■□□□□ 0.37
COL6A1-205ENST00000492851 AMPHP49418 695 aa17.38■□□□□ 0.37
COL6A1-205ENST00000492851 TNS2Q63HR2 1409 aa17.38■□□□□ 0.37
COL6A1-205ENST00000492851 RREB1Q92766 1687 aa17.36■□□□□ 0.37
COL6A1-205ENST00000492851 SPON1Q9HCB6 807 aa17.36■□□□□ 0.37
COL6A1-205ENST00000492851 RGPD5Q99666 1765 aa17.35■□□□□ 0.37
COL6A1-205ENST00000492851 RGPD3A6NKT7 1758 aaPredicted RBP17.34■□□□□ 0.37
COL6A1-205ENST00000492851 FYB1O15117 783 aa17.34■□□□□ 0.37
COL6A1-205ENST00000492851 KCNQ2O43526 872 aa17.34■□□□□ 0.37
COL6A1-205ENST00000492851 HOXC9P31274 260 aa17.34■□□□□ 0.37
COL6A1-205ENST00000492851 MAP3K19Q56UN5 1328 aa17.34■□□□□ 0.37
COL6A1-205ENST00000492851 RGPD4Q7Z3J3 1758 aa17.34■□□□□ 0.37
COL6A1-205ENST00000492851 PCGF6Q9BYE7 350 aa17.34■□□□□ 0.37
COL6A1-205ENST00000492851 WNK3Q9BYP7 1800 aa17.34■□□□□ 0.37
COL6A1-205ENST00000492851 TXNRD1Q16881 649 aa17.33■□□□□ 0.36
COL6A1-205ENST00000492851 PTF1AQ7RTS3 328 aa17.33■□□□□ 0.36
COL6A1-205ENST00000492851 PROM2Q8N271 834 aa17.33■□□□□ 0.36
COL6A1-205ENST00000492851 LTV1Q96GA3 475 aaPredicted RBP17.33■□□□□ 0.36
COL6A1-205ENST00000492851 LTN1O94822 1766 aa17.33■□□□□ 0.36
COL6A1-205ENST00000492851 NUP188Q5SRE5 1749 aa17.33■□□□□ 0.36
COL6A1-205ENST00000492851 STK32BQ9NY57 414 aa17.32■□□□□ 0.36
COL6A1-205ENST00000492851 RTL1A6NKG5 1358 aa17.31■□□□□ 0.36
COL6A1-205ENST00000492851 PPP1R1BQ9UD71 204 aaPredicted RBP17.31■□□□□ 0.36
COL6A1-205ENST00000492851 SBF2Q86WG5 1849 aa17.31■□□□□ 0.36
COL6A1-205ENST00000492851 GGNBP2Q9H3C7 697 aa17.3■□□□□ 0.36
COL6A1-205ENST00000492851 KIF24Q5T7B8 1368 aa17.29■□□□□ 0.36
COL6A1-205ENST00000492851 CGNL1Q0VF96 1302 aa17.29■□□□□ 0.36
COL6A1-205ENST00000492851 DDX54Q8TDD1 881 aaKnown RBP17.29■□□□□ 0.36
COL6A1-205ENST00000492851 ACSBG1Q96GR2 724 aa17.29■□□□□ 0.36
COL6A1-205ENST00000492851 DCAF8L1A6NGE4 600 aa17.28■□□□□ 0.36
COL6A1-205ENST00000492851 SLC15A2Q16348 729 aa17.28■□□□□ 0.36
COL6A1-205ENST00000492851 SMG6Q86US8 1419 aaKnown RBP17.28■□□□□ 0.36
COL6A1-205ENST00000492851 FAM208AQ9UK61 1670 aaKnown RBP17.27■□□□□ 0.36
COL6A1-205ENST00000492851 ZCRB1Q8TBF4 217 aaKnown RBP17.27■□□□□ 0.36
COL6A1-205ENST00000492851 FBLN1P23142 703 aa17.26■□□□□ 0.35
COL6A1-205ENST00000492851 HMGB2P26583 209 aaKnown RBP17.26■□□□□ 0.35
COL6A1-205ENST00000492851 RRS1Q15050 365 aaKnown RBP17.26■□□□□ 0.35
COL6A1-205ENST00000492851 ANO8Q9HCE9 1232 aaPredicted RBP17.26■□□□□ 0.35
COL6A1-205ENST00000492851 SLC27A3Q5K4L6 730 aa17.25■□□□□ 0.35
COL6A1-205ENST00000492851 RAPGEF4Q8WZA2 1011 aa17.25■□□□□ 0.35
COL6A1-205ENST00000492851 INSRP06213 1382 aa17.25■□□□□ 0.35
COL6A1-205ENST00000492851 CARD14Q9BXL6 1004 aa17.24■□□□□ 0.35
COL6A1-205ENST00000492851 FLT4P35916 1363 aa17.24■□□□□ 0.35
COL6A1-205ENST00000492851 NHSQ6T4R5 1651 aa17.23■□□□□ 0.35
COL6A1-205ENST00000492851 TATP17735 454 aaPredicted RBP17.23■□□□□ 0.35
COL6A1-205ENST00000492851 EIF4G2P78344 907 aaKnown RBP eCLIP17.23■□□□□ 0.35
COL6A1-205ENST00000492851 NBPF6Q5VWK0 638 aa17.23■□□□□ 0.35
COL6A1-205ENST00000492851 NBPF4Q96M43 638 aa17.23■□□□□ 0.35
COL6A1-205ENST00000492851 HSP90AB2PQ58FF8 381 aa17.22■□□□□ 0.35
COL6A1-205ENST00000492851 CCER1Q8TC90 406 aaPredicted RBP17.22■□□□□ 0.35
COL6A1-205ENST00000492851 PRIM1P49642 420 aaKnown RBP17.21■□□□□ 0.35
COL6A1-205ENST00000492851 SYTL4Q96C24 671 aaPredicted RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms