RNA–Protein interactions for RNA: ENST00000492512.1

GPNMB-213, Transcript of glycoprotein nmb, humanhuman

TSL 3

Gene GPNMB, Length 447 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-213ENST00000492512 WNK3Q9BYP7 1800 aa19.89■□□□□ 0.77
GPNMB-213ENST00000492512 PTF1AQ7RTS3 328 aa19.88■□□□□ 0.77
GPNMB-213ENST00000492512 CABP1Q9NZU7 370 aa19.88■□□□□ 0.77
GPNMB-213ENST00000492512 COL18A1P39060 1754 aa19.88■□□□□ 0.77
GPNMB-213ENST00000492512 QRICH2Q9H0J4 1663 aa19.87■□□□□ 0.77
GPNMB-213ENST00000492512 CDCA7Q9BWT1 371 aaPredicted RBP19.87■□□□□ 0.77
GPNMB-213ENST00000492512 WDR17Q8IZU2 1322 aa19.86■□□□□ 0.77
GPNMB-213ENST00000492512 ZBTB7AO95365 584 aa19.86■□□□□ 0.77
GPNMB-213ENST00000492512 MARCH10Q8NA82 808 aaPredicted RBP19.86■□□□□ 0.77
GPNMB-213ENST00000492512 PDGFDQ9GZP0 370 aaPredicted RBP19.86■□□□□ 0.77
GPNMB-213ENST00000492512 PIK3C2AO00443 1686 aa19.85■□□□□ 0.77
GPNMB-213ENST00000492512 PROM2Q8N271 834 aa19.85■□□□□ 0.77
GPNMB-213ENST00000492512 AXIN2Q9Y2T1 843 aa19.85■□□□□ 0.77
GPNMB-213ENST00000492512 MYOM1P52179 1685 aa19.84■□□□□ 0.77
GPNMB-213ENST00000492512 RGPD5Q99666 1765 aa19.84■□□□□ 0.77
GPNMB-213ENST00000492512 BCL9O00512 1426 aa19.84■□□□□ 0.77
GPNMB-213ENST00000492512 STK32BQ9NY57 414 aa19.83■□□□□ 0.77
GPNMB-213ENST00000492512 ATF5Q9Y2D1 282 aaPredicted RBP19.83■□□□□ 0.77
GPNMB-213ENST00000492512 CPSF1Q10570 1443 aaKnown RBP19.83■□□□□ 0.76
GPNMB-213ENST00000492512 CSB-PGBD3P0DP91 1061 aa19.82■□□□□ 0.76
GPNMB-213ENST00000492512 PTGER2P43116 358 aa19.82■□□□□ 0.76
GPNMB-213ENST00000492512 UTRNP46939 3433 aa19.82■□□□□ 0.76
GPNMB-213ENST00000492512 TXNRD1Q16881 649 aa19.81■□□□□ 0.76
GPNMB-213ENST00000492512 CARD10Q9BWT7 1032 aa19.81■□□□□ 0.76
GPNMB-213ENST00000492512 ARHGEF25Q86VW2 580 aa19.8■□□□□ 0.76
GPNMB-213ENST00000492512 KCNH5Q8NCM2 988 aa19.8■□□□□ 0.76
GPNMB-213ENST00000492512 EXOC5O00471 708 aa19.79■□□□□ 0.76
GPNMB-213ENST00000492512 SOX12O15370 315 aa19.79■□□□□ 0.76
GPNMB-213ENST00000492512 SLC15A2Q16348 729 aa19.79■□□□□ 0.76
GPNMB-213ENST00000492512 EVC2Q86UK5 1308 aa19.78■□□□□ 0.76
GPNMB-213ENST00000492512 ZNF784Q8NCA9 323 aaPredicted RBP19.78■□□□□ 0.76
GPNMB-213ENST00000492512 CHD4Q14839 1912 aa19.78■□□□□ 0.76
GPNMB-213ENST00000492512 TTC21BQ7Z4L5 1316 aa19.77■□□□□ 0.76
GPNMB-213ENST00000492512 SYT17Q9BSW7 474 aa19.77■□□□□ 0.76
GPNMB-213ENST00000492512 ZNF692Q9BU19 519 aaPredicted RBP19.77■□□□□ 0.76
GPNMB-213ENST00000492512 FHDC1Q9C0D6 1143 aaPredicted RBP19.77■□□□□ 0.76
GPNMB-213ENST00000492512 KAT6BQ8WYB5 2073 aa19.76■□□□□ 0.75
GPNMB-213ENST00000492512 MTFR1LQ9H019 292 aa19.76■□□□□ 0.75
GPNMB-213ENST00000492512 TRPM1Q7Z4N2 1603 aa19.76■□□□□ 0.75
GPNMB-213ENST00000492512 CCDC7Q96M83 1385 aa19.75■□□□□ 0.75
GPNMB-213ENST00000492512 TNS2Q63HR2 1409 aa19.74■□□□□ 0.75
GPNMB-213ENST00000492512 TTC21AQ8NDW8 1320 aa19.74■□□□□ 0.75
GPNMB-213ENST00000492512 NHSQ6T4R5 1651 aa19.73■□□□□ 0.75
GPNMB-213ENST00000492512 NFAT5O94916 1531 aa19.71■□□□□ 0.75
GPNMB-213ENST00000492512 ACSBG1Q96GR2 724 aa19.71■□□□□ 0.75
GPNMB-213ENST00000492512 SGIP1Q9BQI5 828 aa19.71■□□□□ 0.75
GPNMB-213ENST00000492512 ABCC6O95255 1503 aa19.71■□□□□ 0.75
GPNMB-213ENST00000492512 KTN1Q86UP2 1357 aaKnown RBP19.7■□□□□ 0.74
GPNMB-213ENST00000492512 ARXQ96QS3 562 aa19.69■□□□□ 0.74
GPNMB-213ENST00000492512 BTAF1O14981 1849 aa19.68■□□□□ 0.74
GPNMB-213ENST00000492512 L3MBTL2Q969R5 705 aa19.67■□□□□ 0.74
GPNMB-213ENST00000492512 NLRP2Q9NX02 1062 aa19.67■□□□□ 0.74
GPNMB-213ENST00000492512 PAPPAQ13219 1627 aa19.66■□□□□ 0.74
GPNMB-213ENST00000492512 SENP3-EIF4A1A0A087X0R7 540 aa19.66■□□□□ 0.74
GPNMB-213ENST00000492512 MON2Q7Z3U7 1717 aa19.65■□□□□ 0.74
GPNMB-213ENST00000492512 IL2RBP14784 551 aa19.65■□□□□ 0.74
GPNMB-213ENST00000492512 ERBB3P21860 1342 aa19.65■□□□□ 0.74
GPNMB-213ENST00000492512 MAP3K5Q99683 1374 aa19.65■□□□□ 0.74
GPNMB-213ENST00000492512 LTN1O94822 1766 aa19.65■□□□□ 0.74
GPNMB-213ENST00000492512 C1QTNF8P60827 252 aa19.64■□□□□ 0.73
GPNMB-213ENST00000492512 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.64■□□□□ 0.73
GPNMB-213ENST00000492512 ROCK2O75116 1388 aaKnown RBP19.64■□□□□ 0.73
GPNMB-213ENST00000492512 GPR162Q16538 588 aa19.62■□□□□ 0.73
GPNMB-213ENST00000492512 ZNF827Q17R98 1081 aa19.62■□□□□ 0.73
GPNMB-213ENST00000492512 USP31Q70CQ4 1352 aa19.61■□□□□ 0.73
GPNMB-213ENST00000492512 LRRC4BQ9NT99 713 aa19.61■□□□□ 0.73
GPNMB-213ENST00000492512 USP54Q70EL1 1684 aa19.61■□□□□ 0.73
GPNMB-213ENST00000492512 ANKRD24Q8TF21 1146 aa19.6■□□□□ 0.73
GPNMB-213ENST00000492512 GOLGB1Q14789 3259 aaKnown RBP19.59■□□□□ 0.73
GPNMB-213ENST00000492512 NME9Q86XW9 330 aa19.59■□□□□ 0.73
GPNMB-213ENST00000492512 KLHL34Q8N239 644 aa19.59■□□□□ 0.73
GPNMB-213ENST00000492512 POLD1P28340 1107 aa19.58■□□□□ 0.72
GPNMB-213ENST00000492512 SLC16A10Q8TF71 515 aa19.58■□□□□ 0.72
GPNMB-213ENST00000492512 QSER1Q2KHR3 1735 aa19.58■□□□□ 0.72
GPNMB-213ENST00000492512 SLC27A3Q5K4L6 730 aa19.56■□□□□ 0.72
GPNMB-213ENST00000492512 PELP1Q8IZL8 1130 aaKnown RBP19.56■□□□□ 0.72
GPNMB-213ENST00000492512 AKT1S1Q96B36 256 aa19.56■□□□□ 0.72
GPNMB-213ENST00000492512 SBNO2Q9Y2G9 1366 aa19.56■□□□□ 0.72
GPNMB-213ENST00000492512 HDGFL2Q7Z4V5 671 aaPredicted RBP19.55■□□□□ 0.72
GPNMB-213ENST00000492512 DDX54Q8TDD1 881 aaKnown RBP19.55■□□□□ 0.72
GPNMB-213ENST00000492512 TMC1Q8TDI8 760 aa19.55■□□□□ 0.72
GPNMB-213ENST00000492512 SIN3AQ96ST3 1273 aa19.55■□□□□ 0.72
GPNMB-213ENST00000492512 GIGYF1O75420 1035 aaPredicted RBP19.54■□□□□ 0.72
GPNMB-213ENST00000492512 TFCP2L1Q9NZI6 479 aa19.54■□□□□ 0.72
GPNMB-213ENST00000492512 CD163L1Q9NR16 1453 aa19.54■□□□□ 0.72
GPNMB-213ENST00000492512 COL24A1Q17RW2 1714 aa19.54■□□□□ 0.72
GPNMB-213ENST00000492512 PNPLA7Q6ZV29 1317 aa19.53■□□□□ 0.72
GPNMB-213ENST00000492512 TUBGCP6Q96RT7 1819 aa19.53■□□□□ 0.72
GPNMB-213ENST00000492512 NEUROD1Q13562 356 aa19.52■□□□□ 0.72
GPNMB-213ENST00000492512 SYTL4Q96C24 671 aaPredicted RBP19.52■□□□□ 0.72
GPNMB-213ENST00000492512 FAM208AQ9UK61 1670 aaKnown RBP19.52■□□□□ 0.71
GPNMB-213ENST00000492512 EDC4Q6P2E9 1401 aaKnown RBP19.51■□□□□ 0.71
GPNMB-213ENST00000492512 KCNQ4P56696 695 aa19.5■□□□□ 0.71
GPNMB-213ENST00000492512 IP6K1Q92551 441 aa19.5■□□□□ 0.71
GPNMB-213ENST00000492512 LTV1Q96GA3 475 aaPredicted RBP19.5■□□□□ 0.71
GPNMB-213ENST00000492512 SLC12A5Q9H2X9 1139 aa19.5■□□□□ 0.71
GPNMB-213ENST00000492512 PRIM1P49642 420 aaKnown RBP19.49■□□□□ 0.71
GPNMB-213ENST00000492512 TERF2IPQ9NYB0 399 aa19.49■□□□□ 0.71
GPNMB-213ENST00000492512 LY75O60449 1722 aa19.48■□□□□ 0.71
GPNMB-213ENST00000492512 DOT1LQ8TEK3 1739 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms