RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 CENPBP07199 599 aaPredicted RBP12.83□□□□□ -0.36
USP54-214ENST00000492357 ARHGEF25Q86VW2 580 aa12.83□□□□□ -0.36
USP54-214ENST00000492357 IP6K1Q92551 441 aa12.83□□□□□ -0.36
USP54-214ENST00000492357 EMILIN1Q9Y6C2 1016 aa12.83□□□□□ -0.36
USP54-214ENST00000492357 AMPHP49418 695 aa12.82□□□□□ -0.36
USP54-214ENST00000492357 ADAMTS8Q9UP79 889 aa12.82□□□□□ -0.36
USP54-214ENST00000492357 IL13P35225 146 aa12.81□□□□□ -0.36
USP54-214ENST00000492357 KDRP35968 1356 aa12.81□□□□□ -0.36
USP54-214ENST00000492357 CAMTA1Q9Y6Y1 1673 aa12.8□□□□□ -0.36
USP54-214ENST00000492357 UBAP1LF5GYI3 381 aa12.8□□□□□ -0.36
USP54-214ENST00000492357 NEFMP07197 916 aa12.8□□□□□ -0.36
USP54-214ENST00000492357 HOXC9P31274 260 aa12.8□□□□□ -0.36
USP54-214ENST00000492357 XPCQ01831 940 aaPredicted RBP12.8□□□□□ -0.36
USP54-214ENST00000492357 PDE3BQ13370 1112 aa12.8□□□□□ -0.36
USP54-214ENST00000492357 RRS1Q15050 365 aaKnown RBP12.8□□□□□ -0.36
USP54-214ENST00000492357 RUNDC1Q96C34 613 aa12.8□□□□□ -0.36
USP54-214ENST00000492357 NCAPD2Q15021 1401 aa12.79□□□□□ -0.36
USP54-214ENST00000492357 COL18A1P39060 1754 aa12.79□□□□□ -0.36
USP54-214ENST00000492357 HNRNPUQ00839 825 aaKnown RBP eCLIP12.79□□□□□ -0.36
USP54-214ENST00000492357 LMOD2Q6P5Q4 547 aa12.79□□□□□ -0.36
USP54-214ENST00000492357 U2AF1L5P0DN76 240 aaPredicted RBP12.78□□□□□ -0.36
USP54-214ENST00000492357 U2AF1Q01081 240 aaKnown RBP eCLIP12.78□□□□□ -0.36
USP54-214ENST00000492357 CCDC27Q2M243 656 aa12.78□□□□□ -0.36
USP54-214ENST00000492357 IGSF1Q8N6C5 1336 aa12.78□□□□□ -0.36
USP54-214ENST00000492357 LMO7Q8WWI1 1683 aa12.77□□□□□ -0.36
USP54-214ENST00000492357 PPM1GO15355 546 aaPredicted RBP12.77□□□□□ -0.37
USP54-214ENST00000492357 EIF4A2Q14240 407 aaKnown RBP12.77□□□□□ -0.37
USP54-214ENST00000492357 NUTM2GQ5VZR2 741 aa12.77□□□□□ -0.37
USP54-214ENST00000492357 COL14A1Q05707 1796 aaKnown RBP12.76□□□□□ -0.37
USP54-214ENST00000492357 U2SURPO15042 1029 aaKnown RBP12.76□□□□□ -0.37
USP54-214ENST00000492357 HSP90AB2PQ58FF8 381 aa12.76□□□□□ -0.37
USP54-214ENST00000492357 DDX17Q92841 729 aaKnown RBP12.76□□□□□ -0.37
USP54-214ENST00000492357 PLEKHF1Q96S99 279 aa12.75□□□□□ -0.37
USP54-214ENST00000492357 RSPH6AQ9H0K4 717 aa12.75□□□□□ -0.37
USP54-214ENST00000492357 JCADQ9P266 1359 aa12.75□□□□□ -0.37
USP54-214ENST00000492357 MAPK8IP3Q9UPT6 1336 aa12.75□□□□□ -0.37
USP54-214ENST00000492357 ERBB3P21860 1342 aa12.74□□□□□ -0.37
USP54-214ENST00000492357 FBLN1P23142 703 aa12.74□□□□□ -0.37
USP54-214ENST00000492357 KIAA0232Q92628 1395 aa12.73□□□□□ -0.37
USP54-214ENST00000492357 SPATA31A6Q5VVP1 1343 aa12.73□□□□□ -0.37
USP54-214ENST00000492357 HAP1P54257 671 aaPredicted RBP12.73□□□□□ -0.37
USP54-214ENST00000492357 LMOD3Q0VAK6 560 aa12.73□□□□□ -0.37
USP54-214ENST00000492357 YTHDC1Q96MU7 727 aaKnown RBP12.73□□□□□ -0.37
USP54-214ENST00000492357 ZNF521Q96K83 1311 aa12.72□□□□□ -0.37
USP54-214ENST00000492357 NWD2Q9ULI1 1742 aa12.72□□□□□ -0.37
USP54-214ENST00000492357 SOX12O15370 315 aa12.72□□□□□ -0.37
USP54-214ENST00000492357 PRDM11Q9NQV5 511 aa12.72□□□□□ -0.37
USP54-214ENST00000492357 CALD1Q05682 793 aaKnown RBP12.71□□□□□ -0.37
USP54-214ENST00000492357 TCP11L2Q8N4U5 519 aa12.71□□□□□ -0.37
USP54-214ENST00000492357 EYA1Q99502 592 aa12.71□□□□□ -0.37
USP54-214ENST00000492357 IL16Q14005 1332 aa12.7□□□□□ -0.38
USP54-214ENST00000492357 APAF1O14727 1248 aa12.7□□□□□ -0.38
USP54-214ENST00000492357 PRKAR2BP31323 418 aa12.7□□□□□ -0.38
USP54-214ENST00000492357 ZC3H6P61129 1189 aaKnown RBP12.7□□□□□ -0.38
USP54-214ENST00000492357 PIP4K2BP78356 416 aa12.7□□□□□ -0.38
USP54-214ENST00000492357 WDR63Q8IWG1 891 aa12.7□□□□□ -0.38
USP54-214ENST00000492357 ANKRD24Q8TF21 1146 aa12.7□□□□□ -0.38
USP54-214ENST00000492357 COL5A2P05997 1499 aaPredicted RBP12.7□□□□□ -0.38
USP54-214ENST00000492357 RGPD5Q99666 1765 aa12.69□□□□□ -0.38
USP54-214ENST00000492357 WDR17Q8IZU2 1322 aa12.69□□□□□ -0.38
USP54-214ENST00000492357 DCAF8L1A6NGE4 600 aa12.69□□□□□ -0.38
USP54-214ENST00000492357 HTATSF1O43719 755 aaKnown RBP12.69□□□□□ -0.38
USP54-214ENST00000492357 NFE2L2Q16236 605 aa12.69□□□□□ -0.38
USP54-214ENST00000492357 AMOTQ4VCS5 1084 aa12.69□□□□□ -0.38
USP54-214ENST00000492357 SULT6B1Q6IMI4 303 aa12.69□□□□□ -0.38
USP54-214ENST00000492357 GAS2L2Q8NHY3 880 aa12.69□□□□□ -0.38
USP54-214ENST00000492357 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.69□□□□□ -0.38
USP54-214ENST00000492357 TMPOP42166 694 aaKnown RBP12.68□□□□□ -0.38
USP54-214ENST00000492357 CABLES1Q8TDN4 633 aa12.68□□□□□ -0.38
USP54-214ENST00000492357 GOLGA2Q08379 1002 aa12.67□□□□□ -0.38
USP54-214ENST00000492357 AXIN2Q9Y2T1 843 aa12.67□□□□□ -0.38
USP54-214ENST00000492357 OVOS2A0A0G2JMS6 1433 aa12.67□□□□□ -0.38
USP54-214ENST00000492357 PLCH1Q4KWH8 1693 aa12.67□□□□□ -0.38
USP54-214ENST00000492357 PARP4Q9UKK3 1724 aaKnown RBP12.66□□□□□ -0.38
USP54-214ENST00000492357 CRB1P82279 1406 aa12.66□□□□□ -0.38
USP54-214ENST00000492357 HMOX1P09601 288 aa12.66□□□□□ -0.38
USP54-214ENST00000492357 WWC1Q8IX03 1113 aa12.66□□□□□ -0.38
USP54-214ENST00000492357 CCDC146Q8IYE0 955 aa12.66□□□□□ -0.38
USP54-214ENST00000492357 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.65□□□□□ -0.38
USP54-214ENST00000492357 E9PSI1 815 aa12.65□□□□□ -0.38
USP54-214ENST00000492357 NBPF6Q5VWK0 638 aa12.65□□□□□ -0.38
USP54-214ENST00000492357 NBPF4Q96M43 638 aa12.65□□□□□ -0.38
USP54-214ENST00000492357 CARD10Q9BWT7 1032 aa12.65□□□□□ -0.38
USP54-214ENST00000492357 SLIT2O94813 1529 aa12.65□□□□□ -0.38
USP54-214ENST00000492357 PKD1L3Q7Z443 1732 aa12.65□□□□□ -0.38
USP54-214ENST00000492357 NRAPQ86VF7 1730 aa12.65□□□□□ -0.38
USP54-214ENST00000492357 RGPD2P0DJD1 1756 aa12.64□□□□□ -0.39
USP54-214ENST00000492357 PLEKHO1Q53GL0 409 aaPredicted RBP12.64□□□□□ -0.39
USP54-214ENST00000492357 DLG5Q8TDM6 1919 aa12.64□□□□□ -0.39
USP54-214ENST00000492357 FAM83GA6ND36 823 aa12.63□□□□□ -0.39
USP54-214ENST00000492357 RIPK4P57078 832 aa12.63□□□□□ -0.39
USP54-214ENST00000492357 AEBP1Q8IUX7 1158 aa12.63□□□□□ -0.39
USP54-214ENST00000492357 TRMT2AQ8IZ69 625 aaKnown RBP12.63□□□□□ -0.39
USP54-214ENST00000492357 RAPGEF4Q8WZA2 1011 aa12.63□□□□□ -0.39
USP54-214ENST00000492357 CDCA7Q9BWT1 371 aaPredicted RBP12.63□□□□□ -0.39
USP54-214ENST00000492357 MYH16Q9H6N6 1097 aa12.63□□□□□ -0.39
USP54-214ENST00000492357 BABAM1Q9NWV8 329 aa12.63□□□□□ -0.39
USP54-214ENST00000492357 ADAMTS7Q9UKP4 1686 aa12.62□□□□□ -0.39
USP54-214ENST00000492357 ZBTB7CA1YPR0 619 aa12.62□□□□□ -0.39
USP54-214ENST00000492357 CT47B1P0C2W7 299 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms