RNA–Protein interactions for RNA: ENST00000490348.1

SRGAP3-208, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 2

Gene SRGAP3, Length 1,554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-208ENST00000490348 MAP3K19Q56UN5 1328 aa19.75■□□□□ 0.75
SRGAP3-208ENST00000490348 RXRBP28702 533 aa19.75■□□□□ 0.75
SRGAP3-208ENST00000490348 GJD4Q96KN9 370 aaPredicted RBP19.75■□□□□ 0.75
SRGAP3-208ENST00000490348 ANKRD26Q9UPS8 1709 aa19.75■□□□□ 0.75
SRGAP3-208ENST00000490348 RBM6P78332 1123 aaKnown RBP19.74■□□□□ 0.75
SRGAP3-208ENST00000490348 RRS1Q15050 365 aaKnown RBP19.74■□□□□ 0.75
SRGAP3-208ENST00000490348 STRN4Q9NRL3 753 aa19.74■□□□□ 0.75
SRGAP3-208ENST00000490348 ABCC6O95255 1503 aa19.74■□□□□ 0.75
SRGAP3-208ENST00000490348 RGPD5Q99666 1765 aa19.74■□□□□ 0.75
SRGAP3-208ENST00000490348 NSD2O96028 1365 aa19.73■□□□□ 0.75
SRGAP3-208ENST00000490348 LARP1Q6PKG0 1096 aaKnown RBP19.73■□□□□ 0.75
SRGAP3-208ENST00000490348 SPATA31A5Q5VU36 1347 aa19.72■□□□□ 0.75
SRGAP3-208ENST00000490348 SPATA31A7Q8IWB4 1347 aa19.72■□□□□ 0.75
SRGAP3-208ENST00000490348 RGS12O14924 1447 aa19.71■□□□□ 0.75
SRGAP3-208ENST00000490348 EVA1CP58658 441 aa19.7■□□□□ 0.74
SRGAP3-208ENST00000490348 PEAK1Q9H792 1746 aa19.7■□□□□ 0.74
SRGAP3-208ENST00000490348 TNNT2P45379 298 aaPredicted RBP19.7■□□□□ 0.74
SRGAP3-208ENST00000490348 IP6K1Q92551 441 aa19.7■□□□□ 0.74
SRGAP3-208ENST00000490348 CCDC9Q9Y3X0 531 aaKnown RBP19.7■□□□□ 0.74
SRGAP3-208ENST00000490348 SPATA31A1Q5TZJ5 1347 aa19.69■□□□□ 0.74
SRGAP3-208ENST00000490348 CDK12Q9NYV4 1490 aaPredicted RBP19.69■□□□□ 0.74
SRGAP3-208ENST00000490348 HOXC9P31274 260 aa19.69■□□□□ 0.74
SRGAP3-208ENST00000490348 EMILIN1Q9Y6C2 1016 aa19.69■□□□□ 0.74
SRGAP3-208ENST00000490348 ERBB3P21860 1342 aa19.68■□□□□ 0.74
SRGAP3-208ENST00000490348 WDR17Q8IZU2 1322 aa19.68■□□□□ 0.74
SRGAP3-208ENST00000490348 RTL1A6NKG5 1358 aa19.67■□□□□ 0.74
SRGAP3-208ENST00000490348 NPC1L1Q9UHC9 1359 aa19.67■□□□□ 0.74
SRGAP3-208ENST00000490348 BLMP54132 1417 aaPredicted RBP19.67■□□□□ 0.74
SRGAP3-208ENST00000490348 CC2D1BQ5T0F9 858 aaKnown RBP19.67■□□□□ 0.74
SRGAP3-208ENST00000490348 MORC1Q86VD1 984 aa19.67■□□□□ 0.74
SRGAP3-208ENST00000490348 POLKQ9UBT6 870 aa19.67■□□□□ 0.74
SRGAP3-208ENST00000490348 CRB1P82279 1406 aa19.67■□□□□ 0.74
SRGAP3-208ENST00000490348 ONECUT3O60422 494 aaPredicted RBP19.66■□□□□ 0.74
SRGAP3-208ENST00000490348 AMPHP49418 695 aa19.66■□□□□ 0.74
SRGAP3-208ENST00000490348 ANKRD24Q8TF21 1146 aa19.66■□□□□ 0.74
SRGAP3-208ENST00000490348 USP35Q9P2H5 1018 aa19.66■□□□□ 0.74
SRGAP3-208ENST00000490348 MAP2P11137 1827 aaKnown RBP19.65■□□□□ 0.74
SRGAP3-208ENST00000490348 DDX10Q13206 875 aaKnown RBP19.65■□□□□ 0.74
SRGAP3-208ENST00000490348 FAM98CQ17RN3 349 aaKnown RBP19.65■□□□□ 0.74
SRGAP3-208ENST00000490348 HSP90AB2PQ58FF8 381 aa19.65■□□□□ 0.74
SRGAP3-208ENST00000490348 FLT4P35916 1363 aa19.64■□□□□ 0.73
SRGAP3-208ENST00000490348 KIF24Q5T7B8 1368 aa19.64■□□□□ 0.73
SRGAP3-208ENST00000490348 CNGB1Q14028 1251 aaPredicted RBP19.63■□□□□ 0.73
SRGAP3-208ENST00000490348 TOM1L2Q6ZVM7 507 aa19.63■□□□□ 0.73
SRGAP3-208ENST00000490348 SMG6Q86US8 1419 aaKnown RBP19.63■□□□□ 0.73
SRGAP3-208ENST00000490348 TCP11L2Q8N4U5 519 aa19.62■□□□□ 0.73
SRGAP3-208ENST00000490348 LTV1Q96GA3 475 aaPredicted RBP19.62■□□□□ 0.73
SRGAP3-208ENST00000490348 INSRP06213 1382 aa19.62■□□□□ 0.73
SRGAP3-208ENST00000490348 THSD7AQ9UPZ6 1657 aa19.62■□□□□ 0.73
SRGAP3-208ENST00000490348 PPM1GO15355 546 aaPredicted RBP19.61■□□□□ 0.73
SRGAP3-208ENST00000490348 CSB-PGBD3P0DP91 1061 aa19.61■□□□□ 0.73
SRGAP3-208ENST00000490348 CARD10Q9BWT7 1032 aa19.61■□□□□ 0.73
SRGAP3-208ENST00000490348 ZNF316A6NFI3 1004 aaPredicted RBP19.61■□□□□ 0.73
SRGAP3-208ENST00000490348 BARGINQ6ZT62 677 aa19.61■□□□□ 0.73
SRGAP3-208ENST00000490348 SEPT12Q8IYM1 358 aa19.61■□□□□ 0.73
SRGAP3-208ENST00000490348 THRAP3Q9Y2W1 955 aaKnown RBP19.59■□□□□ 0.73
SRGAP3-208ENST00000490348 NLRP2Q9NX02 1062 aa19.58■□□□□ 0.73
SRGAP3-208ENST00000490348 BRWD3Q6RI45 1802 aa19.57■□□□□ 0.72
SRGAP3-208ENST00000490348 RGPD2P0DJD1 1756 aa19.57■□□□□ 0.72
SRGAP3-208ENST00000490348 DISP2A7MBM2 1401 aa19.56■□□□□ 0.72
SRGAP3-208ENST00000490348 FAM208AQ9UK61 1670 aaKnown RBP19.56■□□□□ 0.72
SRGAP3-208ENST00000490348 NBPF6Q5VWK0 638 aa19.56■□□□□ 0.72
SRGAP3-208ENST00000490348 NBPF4Q96M43 638 aa19.56■□□□□ 0.72
SRGAP3-208ENST00000490348 WNK3Q9BYP7 1800 aa19.55■□□□□ 0.72
SRGAP3-208ENST00000490348 A0A0G2JS52 829 aa19.54■□□□□ 0.72
SRGAP3-208ENST00000490348 MTHFSP49914 203 aa19.54■□□□□ 0.72
SRGAP3-208ENST00000490348 MYT1Q01538 1121 aa19.54■□□□□ 0.72
SRGAP3-208ENST00000490348 EIF4A2Q14240 407 aaKnown RBP19.53■□□□□ 0.72
SRGAP3-208ENST00000490348 PARP4Q9UKK3 1724 aaKnown RBP19.53■□□□□ 0.72
SRGAP3-208ENST00000490348 USHBP1Q8N6Y0 703 aa19.53■□□□□ 0.72
SRGAP3-208ENST00000490348 PARD3Q8TEW0 1356 aa19.52■□□□□ 0.72
SRGAP3-208ENST00000490348 LRRC37A3O60309 1634 aa19.52■□□□□ 0.72
SRGAP3-208ENST00000490348 KRT27Q7Z3Y8 459 aa19.51■□□□□ 0.71
SRGAP3-208ENST00000490348 NCAPD2Q15021 1401 aa19.51■□□□□ 0.71
SRGAP3-208ENST00000490348 EYA1Q99502 592 aa19.5■□□□□ 0.71
SRGAP3-208ENST00000490348 PPP2R1AP30153 589 aa19.49■□□□□ 0.71
SRGAP3-208ENST00000490348 FAM182BQ5T319 152 aa19.49■□□□□ 0.71
SRGAP3-208ENST00000490348 MEGF6O75095 1541 aa19.49■□□□□ 0.71
SRGAP3-208ENST00000490348 SOCS7O14512 581 aa19.49■□□□□ 0.71
SRGAP3-208ENST00000490348 IL2RBP14784 551 aa19.49■□□□□ 0.71
SRGAP3-208ENST00000490348 COL3A1P02461 1466 aaPredicted RBP19.48■□□□□ 0.71
SRGAP3-208ENST00000490348 IL13P35225 146 aa19.48■□□□□ 0.71
SRGAP3-208ENST00000490348 CDCA7Q9BWT1 371 aaPredicted RBP19.48■□□□□ 0.71
SRGAP3-208ENST00000490348 DDB1Q16531 1140 aa19.46■□□□□ 0.71
SRGAP3-208ENST00000490348 TNS2Q63HR2 1409 aa19.46■□□□□ 0.7
SRGAP3-208ENST00000490348 RGPD1P0DJD0 1748 aa19.45■□□□□ 0.7
SRGAP3-208ENST00000490348 IGSF1Q8N6C5 1336 aa19.45■□□□□ 0.7
SRGAP3-208ENST00000490348 PDE3BQ13370 1112 aa19.44■□□□□ 0.7
SRGAP3-208ENST00000490348 MARCH10Q8NA82 808 aaPredicted RBP19.44■□□□□ 0.7
SRGAP3-208ENST00000490348 OVOS2A0A0G2JMS6 1433 aa19.43■□□□□ 0.7
SRGAP3-208ENST00000490348 EXOC5O00471 708 aa19.42■□□□□ 0.7
SRGAP3-208ENST00000490348 RALBP1Q15311 655 aa19.42■□□□□ 0.7
SRGAP3-208ENST00000490348 UPF1Q92900 1129 aaKnown RBP eCLIP19.42■□□□□ 0.7
SRGAP3-208ENST00000490348 AEBP1Q8IUX7 1158 aa19.41■□□□□ 0.7
SRGAP3-208ENST00000490348 DIAPH1O60610 1272 aaKnown RBP19.4■□□□□ 0.7
SRGAP3-208ENST00000490348 SHANK3Q9BYB0 1731 aa19.4■□□□□ 0.7
SRGAP3-208ENST00000490348 RAPGEF4Q8WZA2 1011 aa19.4■□□□□ 0.7
SRGAP3-208ENST00000490348 PRKRIP1Q9H875 184 aaPredicted RBP19.4■□□□□ 0.7
SRGAP3-208ENST00000490348 KDRP35968 1356 aa19.39■□□□□ 0.69
SRGAP3-208ENST00000490348 TATP17735 454 aaPredicted RBP19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms