RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 PTF1AQ7RTS3 328 aa20.22■□□□□ 0.83
VARS-227ENST00000489979 BCL11BQ9C0K0 894 aaPredicted RBP20.22■□□□□ 0.83
VARS-227ENST00000489979 WNK3Q9BYP7 1800 aa20.21■□□□□ 0.83
VARS-227ENST00000489979 AXIN2Q9Y2T1 843 aa20.21■□□□□ 0.83
VARS-227ENST00000489979 CASZ1Q86V15 1759 aa20.21■□□□□ 0.83
VARS-227ENST00000489979 PIK3C2AO00443 1686 aa20.2■□□□□ 0.82
VARS-227ENST00000489979 MARCH10Q8NA82 808 aaPredicted RBP20.19■□□□□ 0.82
VARS-227ENST00000489979 WDR17Q8IZU2 1322 aa20.19■□□□□ 0.82
VARS-227ENST00000489979 PROM2Q8N271 834 aa20.18■□□□□ 0.82
VARS-227ENST00000489979 PDGFDQ9GZP0 370 aaPredicted RBP20.18■□□□□ 0.82
VARS-227ENST00000489979 AKAP12Q02952 1782 aa20.18■□□□□ 0.82
VARS-227ENST00000489979 RGPD5Q99666 1765 aa20.18■□□□□ 0.82
VARS-227ENST00000489979 CDCA7Q9BWT1 371 aaPredicted RBP20.17■□□□□ 0.82
VARS-227ENST00000489979 ZBTB7AO95365 584 aa20.16■□□□□ 0.82
VARS-227ENST00000489979 CPSF1Q10570 1443 aaKnown RBP20.16■□□□□ 0.82
VARS-227ENST00000489979 ARHGEF25Q86VW2 580 aa20.15■□□□□ 0.82
VARS-227ENST00000489979 BCL9O00512 1426 aa20.15■□□□□ 0.82
VARS-227ENST00000489979 TTC21BQ7Z4L5 1316 aa20.14■□□□□ 0.81
VARS-227ENST00000489979 EVC2Q86UK5 1308 aa20.14■□□□□ 0.81
VARS-227ENST00000489979 SOX12O15370 315 aa20.14■□□□□ 0.81
VARS-227ENST00000489979 CSB-PGBD3P0DP91 1061 aa20.14■□□□□ 0.81
VARS-227ENST00000489979 KCNH5Q8NCM2 988 aa20.13■□□□□ 0.81
VARS-227ENST00000489979 CARD10Q9BWT7 1032 aa20.13■□□□□ 0.81
VARS-227ENST00000489979 PTGER2P43116 358 aa20.12■□□□□ 0.81
VARS-227ENST00000489979 TXNRD1Q16881 649 aa20.12■□□□□ 0.81
VARS-227ENST00000489979 ATF5Q9Y2D1 282 aaPredicted RBP20.12■□□□□ 0.81
VARS-227ENST00000489979 MYOM1P52179 1685 aa20.12■□□□□ 0.81
VARS-227ENST00000489979 ZNF692Q9BU19 519 aaPredicted RBP20.11■□□□□ 0.81
VARS-227ENST00000489979 STK32BQ9NY57 414 aa20.11■□□□□ 0.81
VARS-227ENST00000489979 TRPM1Q7Z4N2 1603 aa20.11■□□□□ 0.81
VARS-227ENST00000489979 EXOC5O00471 708 aa20.1■□□□□ 0.81
VARS-227ENST00000489979 UTRNP46939 3433 aa20.09■□□□□ 0.81
VARS-227ENST00000489979 SLC15A2Q16348 729 aa20.09■□□□□ 0.81
VARS-227ENST00000489979 L3MBTL2Q969R5 705 aa20.09■□□□□ 0.81
VARS-227ENST00000489979 TTC21AQ8NDW8 1320 aa20.08■□□□□ 0.81
VARS-227ENST00000489979 NFAT5O94916 1531 aa20.07■□□□□ 0.8
VARS-227ENST00000489979 CCDC7Q96M83 1385 aa20.07■□□□□ 0.8
VARS-227ENST00000489979 TNS2Q63HR2 1409 aa20.05■□□□□ 0.8
VARS-227ENST00000489979 FHDC1Q9C0D6 1143 aaPredicted RBP20.05■□□□□ 0.8
VARS-227ENST00000489979 ACSBG1Q96GR2 724 aa20.04■□□□□ 0.8
VARS-227ENST00000489979 SYT17Q9BSW7 474 aa20.04■□□□□ 0.8
VARS-227ENST00000489979 MTFR1LQ9H019 292 aa20.04■□□□□ 0.8
VARS-227ENST00000489979 KTN1Q86UP2 1357 aaKnown RBP20.04■□□□□ 0.8
VARS-227ENST00000489979 NHSQ6T4R5 1651 aa20.03■□□□□ 0.8
VARS-227ENST00000489979 ABCC6O95255 1503 aa20.02■□□□□ 0.8
VARS-227ENST00000489979 ZNF784Q8NCA9 323 aaPredicted RBP20.02■□□□□ 0.8
VARS-227ENST00000489979 SGIP1Q9BQI5 828 aa20.02■□□□□ 0.8
VARS-227ENST00000489979 ROCK2O75116 1388 aaKnown RBP20.02■□□□□ 0.8
VARS-227ENST00000489979 KAT6BQ8WYB5 2073 aa20.02■□□□□ 0.8
VARS-227ENST00000489979 MON2Q7Z3U7 1717 aa20.01■□□□□ 0.79
VARS-227ENST00000489979 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20■□□□□ 0.79
VARS-227ENST00000489979 NLRP2Q9NX02 1062 aa20■□□□□ 0.79
VARS-227ENST00000489979 SIN3AQ96ST3 1273 aa19.99■□□□□ 0.79
VARS-227ENST00000489979 CHD4Q14839 1912 aa19.99■□□□□ 0.79
VARS-227ENST00000489979 ERBB3P21860 1342 aa19.99■□□□□ 0.79
VARS-227ENST00000489979 PAPPAQ13219 1627 aa19.98■□□□□ 0.79
VARS-227ENST00000489979 LTN1O94822 1766 aa19.98■□□□□ 0.79
VARS-227ENST00000489979 BTAF1O14981 1849 aa19.97■□□□□ 0.79
VARS-227ENST00000489979 USP31Q70CQ4 1352 aa19.97■□□□□ 0.79
VARS-227ENST00000489979 IL2RBP14784 551 aa19.97■□□□□ 0.79
VARS-227ENST00000489979 ARXQ96QS3 562 aa19.97■□□□□ 0.79
VARS-227ENST00000489979 NME9Q86XW9 330 aa19.96■□□□□ 0.79
VARS-227ENST00000489979 USP54Q70EL1 1684 aa19.96■□□□□ 0.79
VARS-227ENST00000489979 ZNF827Q17R98 1081 aa19.95■□□□□ 0.78
VARS-227ENST00000489979 NEUROD1Q13562 356 aa19.94■□□□□ 0.78
VARS-227ENST00000489979 ANKRD24Q8TF21 1146 aa19.94■□□□□ 0.78
VARS-227ENST00000489979 SBNO2Q9Y2G9 1366 aa19.94■□□□□ 0.78
VARS-227ENST00000489979 CD163L1Q9NR16 1453 aa19.93■□□□□ 0.78
VARS-227ENST00000489979 LRRC4BQ9NT99 713 aa19.93■□□□□ 0.78
VARS-227ENST00000489979 TMC1Q8TDI8 760 aa19.92■□□□□ 0.78
VARS-227ENST00000489979 MAP3K5Q99683 1374 aa19.92■□□□□ 0.78
VARS-227ENST00000489979 HDGFL2Q7Z4V5 671 aaPredicted RBP19.89■□□□□ 0.77
VARS-227ENST00000489979 GPR162Q16538 588 aa19.88■□□□□ 0.77
VARS-227ENST00000489979 DDX54Q8TDD1 881 aaKnown RBP19.88■□□□□ 0.77
VARS-227ENST00000489979 AKT1S1Q96B36 256 aa19.88■□□□□ 0.77
VARS-227ENST00000489979 SLC12A5Q9H2X9 1139 aa19.88■□□□□ 0.77
VARS-227ENST00000489979 SENP3-EIF4A1A0A087X0R7 540 aa19.87■□□□□ 0.77
VARS-227ENST00000489979 KLHL34Q8N239 644 aa19.87■□□□□ 0.77
VARS-227ENST00000489979 QSER1Q2KHR3 1735 aa19.87■□□□□ 0.77
VARS-227ENST00000489979 EDC4Q6P2E9 1401 aaKnown RBP19.86■□□□□ 0.77
VARS-227ENST00000489979 C1QTNF8P60827 252 aa19.86■□□□□ 0.77
VARS-227ENST00000489979 SLC27A3Q5K4L6 730 aa19.86■□□□□ 0.77
VARS-227ENST00000489979 SLC16A10Q8TF71 515 aa19.85■□□□□ 0.77
VARS-227ENST00000489979 IP6K1Q92551 441 aa19.85■□□□□ 0.77
VARS-227ENST00000489979 LTV1Q96GA3 475 aaPredicted RBP19.85■□□□□ 0.77
VARS-227ENST00000489979 CARD11Q9BXL7 1154 aa19.85■□□□□ 0.77
VARS-227ENST00000489979 PNPLA7Q6ZV29 1317 aa19.84■□□□□ 0.77
VARS-227ENST00000489979 POLD1P28340 1107 aa19.84■□□□□ 0.77
VARS-227ENST00000489979 A0A1W2PP64 1363 aa19.83■□□□□ 0.77
VARS-227ENST00000489979 TUBGCP6Q96RT7 1819 aa19.83■□□□□ 0.77
VARS-227ENST00000489979 COL24A1Q17RW2 1714 aa19.83■□□□□ 0.77
VARS-227ENST00000489979 KCNQ4P56696 695 aa19.83■□□□□ 0.77
VARS-227ENST00000489979 SYTL4Q96C24 671 aaPredicted RBP19.83■□□□□ 0.77
VARS-227ENST00000489979 TERF2IPQ9NYB0 399 aa19.83■□□□□ 0.77
VARS-227ENST00000489979 GOLGB1Q14789 3259 aaKnown RBP19.83■□□□□ 0.76
VARS-227ENST00000489979 FAM208AQ9UK61 1670 aaKnown RBP19.82■□□□□ 0.76
VARS-227ENST00000489979 PELP1Q8IZL8 1130 aaKnown RBP19.82■□□□□ 0.76
VARS-227ENST00000489979 TFCP2L1Q9NZI6 479 aa19.82■□□□□ 0.76
VARS-227ENST00000489979 PRIM1P49642 420 aaKnown RBP19.81■□□□□ 0.76
VARS-227ENST00000489979 DOT1LQ8TEK3 1739 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms