RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 NECTIN2Q92692 538 aa7.98□□□□□ -1.13
ATG4A-208ENST00000489247 MPHOSPH9Q99550 1183 aa7.98□□□□□ -1.13
ATG4A-208ENST00000489247 PLXNC1O60486 1568 aa7.97□□□□□ -1.13
ATG4A-208ENST00000489247 DGAT1O75907 488 aa7.97□□□□□ -1.13
ATG4A-208ENST00000489247 WFS1O76024 890 aa7.97□□□□□ -1.13
ATG4A-208ENST00000489247 FUT2Q10981 343 aa7.97□□□□□ -1.13
ATG4A-208ENST00000489247 DIEXFQ68CQ4 756 aaKnown RBP7.97□□□□□ -1.13
ATG4A-208ENST00000489247 BLOC1S3Q6QNY0 202 aa7.97□□□□□ -1.13
ATG4A-208ENST00000489247 SIN3AQ96ST3 1273 aa7.97□□□□□ -1.13
ATG4A-208ENST00000489247 MTRQ99707 1265 aa7.97□□□□□ -1.13
ATG4A-208ENST00000489247 BEGAINQ9BUH8 593 aa7.97□□□□□ -1.13
ATG4A-208ENST00000489247 RPRD2Q5VT52 1461 aaKnown RBP7.97□□□□□ -1.13
ATG4A-208ENST00000489247 ABCC1P33527 1531 aa7.97□□□□□ -1.13
ATG4A-208ENST00000489247 ARHGAP5Q13017 1502 aa7.97□□□□□ -1.13
ATG4A-208ENST00000489247 ABCA9Q8IUA7 1624 aa7.96□□□□□ -1.13
ATG4A-208ENST00000489247 RTEL1-TNFRSF6BF6WH68 1400 aa7.96□□□□□ -1.13
ATG4A-208ENST00000489247 MYO5CQ9NQX4 1742 aa7.96□□□□□ -1.14
ATG4A-208ENST00000489247 TSPY4P0CV99 314 aa7.96□□□□□ -1.14
ATG4A-208ENST00000489247 TSPY10P0CW01 314 aa7.96□□□□□ -1.14
ATG4A-208ENST00000489247 EFCAB2Q5VUJ9 269 aa7.96□□□□□ -1.14
ATG4A-208ENST00000489247 IL27Q8NEV9 243 aa7.96□□□□□ -1.14
ATG4A-208ENST00000489247 ZNF516Q92618 1163 aa7.96□□□□□ -1.14
ATG4A-208ENST00000489247 HLA-CQ95604 372 aa7.96□□□□□ -1.14
ATG4A-208ENST00000489247 PCDHB3Q9Y5E6 796 aa7.96□□□□□ -1.14
ATG4A-208ENST00000489247 SYCP2Q9BX26 1530 aa7.96□□□□□ -1.14
ATG4A-208ENST00000489247 KIF15Q9NS87 1388 aa7.96□□□□□ -1.14
ATG4A-208ENST00000489247 ARHGEF12Q9NZN5 1544 aa7.95□□□□□ -1.14
ATG4A-208ENST00000489247 TRIM67Q6ZTA4 783 aa7.95□□□□□ -1.14
ATG4A-208ENST00000489247 ZNF777Q9ULD5 760 aaPredicted RBP7.95□□□□□ -1.14
ATG4A-208ENST00000489247 TONSLQ96HA7 1378 aa7.95□□□□□ -1.14
ATG4A-208ENST00000489247 ASXL2Q76L83 1435 aa7.95□□□□□ -1.14
ATG4A-208ENST00000489247 MAGI2Q86UL8 1455 aa7.94□□□□□ -1.14
ATG4A-208ENST00000489247 WIPF1O43516 503 aa7.94□□□□□ -1.14
ATG4A-208ENST00000489247 KDM4AO75164 1064 aa7.94□□□□□ -1.14
ATG4A-208ENST00000489247 HNRNPMP52272 730 aaKnown RBP eCLIP7.94□□□□□ -1.14
ATG4A-208ENST00000489247 PRR14Q9BWN1 585 aa7.94□□□□□ -1.14
ATG4A-208ENST00000489247 ERBINQ96RT1 1412 aa7.94□□□□□ -1.14
ATG4A-208ENST00000489247 TEX14Q8IWB6 1497 aa7.94□□□□□ -1.14
ATG4A-208ENST00000489247 SPIRE2Q8WWL2 714 aa7.93□□□□□ -1.14
ATG4A-208ENST00000489247 TRIM52Q96A61 297 aa7.93□□□□□ -1.14
ATG4A-208ENST00000489247 FAM117AQ9C073 453 aa7.93□□□□□ -1.14
ATG4A-208ENST00000489247 IL21Q9HBE4 155 aa7.93□□□□□ -1.14
ATG4A-208ENST00000489247 DUOX2Q9NRD8 1548 aa7.93□□□□□ -1.14
ATG4A-208ENST00000489247 UNC13BO14795 1591 aa7.93□□□□□ -1.14
ATG4A-208ENST00000489247 GUCA2AQ02747 115 aa7.92□□□□□ -1.14
ATG4A-208ENST00000489247 MORN1Q5T089 497 aa7.92□□□□□ -1.14
ATG4A-208ENST00000489247 NUTM1Q86Y26 1132 aa7.92□□□□□ -1.14
ATG4A-208ENST00000489247 HOXA2O43364 376 aa7.91□□□□□ -1.14
ATG4A-208ENST00000489247 TLL1O43897 1013 aa7.91□□□□□ -1.14
ATG4A-208ENST00000489247 NDUFV2P19404 249 aa7.91□□□□□ -1.14
ATG4A-208ENST00000489247 ATP6V1AP38606 617 aa7.91□□□□□ -1.14
ATG4A-208ENST00000489247 NEUROD1Q13562 356 aa7.91□□□□□ -1.14
ATG4A-208ENST00000489247 SUZ12Q15022 739 aaKnown RBP7.91□□□□□ -1.14
ATG4A-208ENST00000489247 NKX2-3Q8TAU0 364 aa7.91□□□□□ -1.14
ATG4A-208ENST00000489247 TBC1D2Q9BYX2 928 aa7.91□□□□□ -1.14
ATG4A-208ENST00000489247 SLC27A5Q9Y2P5 690 aa7.91□□□□□ -1.14
ATG4A-208ENST00000489247 TRAPPC8Q9Y2L5 1435 aa7.91□□□□□ -1.14
ATG4A-208ENST00000489247 ATP10AO60312 1499 aa7.91□□□□□ -1.14
ATG4A-208ENST00000489247 ZFYVE16Q7Z3T8 1539 aa7.9□□□□□ -1.14
ATG4A-208ENST00000489247 FANCAO15360 1455 aa7.9□□□□□ -1.14
ATG4A-208ENST00000489247 NUP155O75694 1391 aa7.9□□□□□ -1.14
ATG4A-208ENST00000489247 PLEKHG3A1L390 1219 aa7.9□□□□□ -1.14
ATG4A-208ENST00000489247 SCUBE3Q8IX30 993 aa7.9□□□□□ -1.14
ATG4A-208ENST00000489247 MOXD2PA6NHM9 499 aa7.89□□□□□ -1.15
ATG4A-208ENST00000489247 ZPR1O75312 459 aa7.89□□□□□ -1.15
ATG4A-208ENST00000489247 INO80Q9ULG1 1556 aaPredicted RBP7.88□□□□□ -1.15
ATG4A-208ENST00000489247 FAM135AQ9P2D6 1515 aa7.88□□□□□ -1.15
ATG4A-208ENST00000489247 UHRF1BP1Q6BDS2 1440 aa7.88□□□□□ -1.15
ATG4A-208ENST00000489247 USP46P62068 366 aa7.88□□□□□ -1.15
ATG4A-208ENST00000489247 PCDHGC3Q9UN70 934 aa7.88□□□□□ -1.15
ATG4A-208ENST00000489247 IQGAP3Q86VI3 1631 aa7.88□□□□□ -1.15
ATG4A-208ENST00000489247 NR1I2O75469 434 aa7.87□□□□□ -1.15
ATG4A-208ENST00000489247 RNF19BQ6ZMZ0 732 aa7.87□□□□□ -1.15
ATG4A-208ENST00000489247 L3MBTL2Q969R5 705 aa7.87□□□□□ -1.15
ATG4A-208ENST00000489247 GLI2P10070 1586 aa7.87□□□□□ -1.15
ATG4A-208ENST00000489247 CFAP74Q9C0B2 1584 aa7.87□□□□□ -1.15
ATG4A-208ENST00000489247 ADGRL1O94910 1474 aa7.87□□□□□ -1.15
ATG4A-208ENST00000489247 NEO1Q92859 1461 aa7.87□□□□□ -1.15
ATG4A-208ENST00000489247 SPAG9O60271 1321 aaKnown RBP7.86□□□□□ -1.15
ATG4A-208ENST00000489247 KDM5CP41229 1560 aa7.86□□□□□ -1.15
ATG4A-208ENST00000489247 VWDEQ8N2E2 1590 aa7.86□□□□□ -1.15
ATG4A-208ENST00000489247 FAM187AA6NFU0 413 aa7.86□□□□□ -1.15
ATG4A-208ENST00000489247 ST8SIA5O15466 376 aa7.86□□□□□ -1.15
ATG4A-208ENST00000489247 GGCXP38435 758 aa7.86□□□□□ -1.15
ATG4A-208ENST00000489247 NFX1Q12986 1120 aaKnown RBP7.86□□□□□ -1.15
ATG4A-208ENST00000489247 GRIPAP1Q4V328 841 aa7.86□□□□□ -1.15
ATG4A-208ENST00000489247 MYSM1Q5VVJ2 828 aa7.86□□□□□ -1.15
ATG4A-208ENST00000489247 SYMPKQ92797 1274 aaKnown RBP7.86□□□□□ -1.15
ATG4A-208ENST00000489247 THAP11Q96EK4 314 aa7.86□□□□□ -1.15
ATG4A-208ENST00000489247 ZNF518AQ6AHZ1 1483 aa7.86□□□□□ -1.15
ATG4A-208ENST00000489247 SCAPERQ9BY12 1400 aa7.86□□□□□ -1.15
ATG4A-208ENST00000489247 ATP7AQ04656 1500 aa7.85□□□□□ -1.15
ATG4A-208ENST00000489247 PLA2R1Q13018 1463 aa7.85□□□□□ -1.15
ATG4A-208ENST00000489247 MLH3Q9UHC1 1453 aa7.85□□□□□ -1.15
ATG4A-208ENST00000489247 CD109Q6YHK3 1445 aa7.85□□□□□ -1.15
ATG4A-208ENST00000489247 SPATA31E1Q6ZUB1 1445 aa7.85□□□□□ -1.15
ATG4A-208ENST00000489247 POGZQ7Z3K3 1410 aa7.85□□□□□ -1.15
ATG4A-208ENST00000489247 DEPDC5O75140 1603 aa7.85□□□□□ -1.15
ATG4A-208ENST00000489247 EIF2AK4Q9P2K8 1649 aaKnown RBP7.85□□□□□ -1.15
ATG4A-208ENST00000489247 DHX29Q7Z478 1369 aaKnown RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms