RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 TOM1O60784 492 aa13.19□□□□□ -0.3
USP11-211ENST00000489111 HMOX1P09601 288 aa13.19□□□□□ -0.3
USP11-211ENST00000489111 PRKAR2BP31323 418 aa13.19□□□□□ -0.3
USP11-211ENST00000489111 HAP1P54257 671 aaPredicted RBP13.19□□□□□ -0.3
USP11-211ENST00000489111 TCP11L2Q8N4U5 519 aa13.19□□□□□ -0.3
USP11-211ENST00000489111 IP6K1Q92551 441 aa13.19□□□□□ -0.3
USP11-211ENST00000489111 RSPH6AQ9H0K4 717 aa13.19□□□□□ -0.3
USP11-211ENST00000489111 ARHGEF25Q86VW2 580 aa13.18□□□□□ -0.3
USP11-211ENST00000489111 LTV1Q96GA3 475 aaPredicted RBP13.17□□□□□ -0.3
USP11-211ENST00000489111 PLEKHF1Q96S99 279 aa13.17□□□□□ -0.3
USP11-211ENST00000489111 RRP7AQ9Y3A4 280 aaKnown RBP13.17□□□□□ -0.3
USP11-211ENST00000489111 NHSL1Q5SYE7 1610 aa13.17□□□□□ -0.3
USP11-211ENST00000489111 MAP2P11137 1827 aaKnown RBP13.16□□□□□ -0.3
USP11-211ENST00000489111 ROBO1Q9Y6N7 1651 aa13.16□□□□□ -0.3
USP11-211ENST00000489111 ZC3H6P61129 1189 aaKnown RBP13.16□□□□□ -0.3
USP11-211ENST00000489111 NEUROD2Q15784 382 aa13.16□□□□□ -0.3
USP11-211ENST00000489111 SULT6B1Q6IMI4 303 aa13.16□□□□□ -0.3
USP11-211ENST00000489111 CABLES1Q8TDN4 633 aa13.16□□□□□ -0.3
USP11-211ENST00000489111 AHDC1Q5TGY3 1603 aaPredicted RBP13.16□□□□□ -0.3
USP11-211ENST00000489111 IGSF1Q8N6C5 1336 aa13.15□□□□□ -0.3
USP11-211ENST00000489111 UBAP1LF5GYI3 381 aa13.15□□□□□ -0.3
USP11-211ENST00000489111 PIP4K2BP78356 416 aa13.15□□□□□ -0.3
USP11-211ENST00000489111 GOLGA2Q08379 1002 aa13.15□□□□□ -0.3
USP11-211ENST00000489111 NCBP3Q53F19 620 aaKnown RBP13.15□□□□□ -0.3
USP11-211ENST00000489111 LRRC59Q96AG4 307 aaKnown RBP13.15□□□□□ -0.3
USP11-211ENST00000489111 ZNF521Q96K83 1311 aa13.14□□□□□ -0.31
USP11-211ENST00000489111 TMPOP42166 694 aaKnown RBP13.14□□□□□ -0.31
USP11-211ENST00000489111 CCDC27Q2M243 656 aa13.14□□□□□ -0.31
USP11-211ENST00000489111 AEBP1Q8IUX7 1158 aa13.14□□□□□ -0.31
USP11-211ENST00000489111 CPDO75976 1380 aa13.14□□□□□ -0.31
USP11-211ENST00000489111 PHRF1Q9P1Y6 1649 aaKnown RBP13.13□□□□□ -0.31
USP11-211ENST00000489111 KIAA0232Q92628 1395 aa13.13□□□□□ -0.31
USP11-211ENST00000489111 NFE2L2Q16236 605 aa13.13□□□□□ -0.31
USP11-211ENST00000489111 WWC1Q8IX03 1113 aa13.13□□□□□ -0.31
USP11-211ENST00000489111 ANKRD24Q8TF21 1146 aa13.13□□□□□ -0.31
USP11-211ENST00000489111 EYA1Q99502 592 aa13.13□□□□□ -0.31
USP11-211ENST00000489111 ABCC6O95255 1503 aa13.13□□□□□ -0.31
USP11-211ENST00000489111 KDRP35968 1356 aa13.12□□□□□ -0.31
USP11-211ENST00000489111 RIPK4P57078 832 aa13.12□□□□□ -0.31
USP11-211ENST00000489111 LMOD3Q0VAK6 560 aa13.12□□□□□ -0.31
USP11-211ENST00000489111 PRDM11Q9NQV5 511 aa13.12□□□□□ -0.31
USP11-211ENST00000489111 E9PSI1 815 aa13.11□□□□□ -0.31
USP11-211ENST00000489111 CERKQ8TCT0 537 aa13.11□□□□□ -0.31
USP11-211ENST00000489111 CDCA7LQ96GN5 454 aa13.11□□□□□ -0.31
USP11-211ENST00000489111 PHACTR3Q96KR7 559 aa13.11□□□□□ -0.31
USP11-211ENST00000489111 LTN1O94822 1766 aa13.11□□□□□ -0.31
USP11-211ENST00000489111 RGPD1P0DJD0 1748 aa13.1□□□□□ -0.31
USP11-211ENST00000489111 CSB-PGBD3P0DP91 1061 aa13.1□□□□□ -0.31
USP11-211ENST00000489111 CHRNA2Q15822 529 aa13.1□□□□□ -0.31
USP11-211ENST00000489111 WDR63Q8IWG1 891 aa13.1□□□□□ -0.31
USP11-211ENST00000489111 PHF23Q9BUL5 403 aaPredicted RBP13.1□□□□□ -0.31
USP11-211ENST00000489111 ERBB3P21860 1342 aa13.1□□□□□ -0.31
USP11-211ENST00000489111 NEFLP07196 543 aa13.09□□□□□ -0.31
USP11-211ENST00000489111 CALD1Q05682 793 aaKnown RBP13.09□□□□□ -0.31
USP11-211ENST00000489111 USHBP1Q8N6Y0 703 aa13.09□□□□□ -0.31
USP11-211ENST00000489111 CRYBG1Q9Y4K1 1723 aa13.08□□□□□ -0.32
USP11-211ENST00000489111 SLFN5Q08AF3 891 aa13.08□□□□□ -0.32
USP11-211ENST00000489111 NBPF6Q5VWK0 638 aa13.08□□□□□ -0.32
USP11-211ENST00000489111 NBPF4Q96M43 638 aa13.08□□□□□ -0.32
USP11-211ENST00000489111 MYH16Q9H6N6 1097 aa13.08□□□□□ -0.32
USP11-211ENST00000489111 AXIN2Q9Y2T1 843 aa13.08□□□□□ -0.32
USP11-211ENST00000489111 GAS2L2Q8NHY3 880 aa13.07□□□□□ -0.32
USP11-211ENST00000489111 NLRP2Q9NX02 1062 aa13.07□□□□□ -0.32
USP11-211ENST00000489111 TRIM35Q9UPQ4 493 aa13.07□□□□□ -0.32
USP11-211ENST00000489111 IL16Q14005 1332 aa13.07□□□□□ -0.32
USP11-211ENST00000489111 DUSP27Q5VZP5 1158 aa13.06□□□□□ -0.32
USP11-211ENST00000489111 GTF3C3Q9Y5Q9 886 aa13.06□□□□□ -0.32
USP11-211ENST00000489111 COL16A1Q07092 1604 aaPredicted RBP13.06□□□□□ -0.32
USP11-211ENST00000489111 PHLPP1O60346 1717 aa13.05□□□□□ -0.32
USP11-211ENST00000489111 SUPT16HQ9Y5B9 1047 aaKnown RBP13.05□□□□□ -0.32
USP11-211ENST00000489111 ABCA3Q99758 1704 aa13.05□□□□□ -0.32
USP11-211ENST00000489111 NCAPD2Q15021 1401 aa13.05□□□□□ -0.32
USP11-211ENST00000489111 COL22A1Q8NFW1 1626 aaPredicted RBP13.04□□□□□ -0.32
USP11-211ENST00000489111 RTF1Q92541 710 aaKnown RBP13.04□□□□□ -0.32
USP11-211ENST00000489111 SPINK5Q9NQ38 1064 aaPredicted RBP13.04□□□□□ -0.32
USP11-211ENST00000489111 RCAN3Q9UKA8 241 aa13.04□□□□□ -0.32
USP11-211ENST00000489111 MTHFSDQ2M296 383 aaKnown RBP13.03□□□□□ -0.32
USP11-211ENST00000489111 TRMT2AQ8IZ69 625 aaKnown RBP13.03□□□□□ -0.32
USP11-211ENST00000489111 RAPGEF4Q8WZA2 1011 aa13.03□□□□□ -0.32
USP11-211ENST00000489111 AMOTQ4VCS5 1084 aa13.02□□□□□ -0.33
USP11-211ENST00000489111 PLEKHO1Q53GL0 409 aaPredicted RBP13.02□□□□□ -0.33
USP11-211ENST00000489111 WDR17Q8IZU2 1322 aa13.02□□□□□ -0.33
USP11-211ENST00000489111 MAP3K5Q99683 1374 aa13.02□□□□□ -0.33
USP11-211ENST00000489111 COL5A2P05997 1499 aaPredicted RBP13.02□□□□□ -0.33
USP11-211ENST00000489111 CAMTA1Q9Y6Y1 1673 aa13.02□□□□□ -0.33
USP11-211ENST00000489111 TATP17735 454 aaPredicted RBP13.01□□□□□ -0.33
USP11-211ENST00000489111 EVA1CP58658 441 aa13.01□□□□□ -0.33
USP11-211ENST00000489111 GNAI1P63096 354 aa13.01□□□□□ -0.33
USP11-211ENST00000489111 TOM1L2Q6ZVM7 507 aa13.01□□□□□ -0.33
USP11-211ENST00000489111 THUMPD2Q9BTF0 503 aaKnown RBP13.01□□□□□ -0.33
USP11-211ENST00000489111 IFT57Q9NWB7 429 aa13.01□□□□□ -0.33
USP11-211ENST00000489111 LAS1LQ9Y4W2 734 aaKnown RBP13.01□□□□□ -0.33
USP11-211ENST00000489111 FANCIQ9NVI1 1328 aa13.01□□□□□ -0.33
USP11-211ENST00000489111 COL18A1P39060 1754 aa13□□□□□ -0.33
USP11-211ENST00000489111 LMO7Q8WWI1 1683 aa13□□□□□ -0.33
USP11-211ENST00000489111 PLEKHG2Q9H7P9 1386 aa13□□□□□ -0.33
USP11-211ENST00000489111 JCADQ9P266 1359 aa13□□□□□ -0.33
USP11-211ENST00000489111 FAM83GA6ND36 823 aa13□□□□□ -0.33
USP11-211ENST00000489111 NUTM2BA6NNL0 878 aaPredicted RBP13□□□□□ -0.33
USP11-211ENST00000489111 GNAT3A8MTJ3 354 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms