RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 PCGF6Q9BYE7 350 aa32.42■■■□□ 2.78
COL9A3-213ENST00000489045 AXIN2Q9Y2T1 843 aa32.42■■■□□ 2.78
COL9A3-213ENST00000489045 BAG6P46379 1132 aa32.41■■■□□ 2.78
COL9A3-213ENST00000489045 TERF2IPQ9NYB0 399 aa32.41■■■□□ 2.78
COL9A3-213ENST00000489045 USP47Q96K76 1375 aa32.41■■■□□ 2.78
COL9A3-213ENST00000489045 LTN1O94822 1766 aa32.4■■■□□ 2.78
COL9A3-213ENST00000489045 NME9Q86XW9 330 aa32.4■■■□□ 2.78
COL9A3-213ENST00000489045 PDE3BQ13370 1112 aa32.39■■■□□ 2.78
COL9A3-213ENST00000489045 ABCC6O95255 1503 aa32.39■■■□□ 2.78
COL9A3-213ENST00000489045 LRRC37A3O60309 1634 aa32.38■■■□□ 2.77
COL9A3-213ENST00000489045 NINLQ9Y2I6 1382 aa32.38■■■□□ 2.77
COL9A3-213ENST00000489045 CLSPNQ9HAW4 1339 aa32.38■■■□□ 2.77
COL9A3-213ENST00000489045 WDR17Q8IZU2 1322 aa32.37■■■□□ 2.77
COL9A3-213ENST00000489045 SLC24A1O60721 1099 aa32.37■■■□□ 2.77
COL9A3-213ENST00000489045 FAM196AQ6ZSG2 479 aa32.37■■■□□ 2.77
COL9A3-213ENST00000489045 TOM1L2Q6ZVM7 507 aa32.37■■■□□ 2.77
COL9A3-213ENST00000489045 DISP2A7MBM2 1401 aa32.34■■■□□ 2.77
COL9A3-213ENST00000489045 TIMELESSQ9UNS1 1208 aa32.33■■■□□ 2.77
COL9A3-213ENST00000489045 TRIM37O94972 964 aa32.32■■■□□ 2.76
COL9A3-213ENST00000489045 EN1Q05925 392 aaPredicted RBP32.32■■■□□ 2.76
COL9A3-213ENST00000489045 OVOS2A0A0J9YW53 1432 aa32.32■■■□□ 2.76
COL9A3-213ENST00000489045 OVOS2Q6IE36 1432 aa32.32■■■□□ 2.76
COL9A3-213ENST00000489045 CSB-PGBD3P0DP91 1061 aa32.3■■■□□ 2.76
COL9A3-213ENST00000489045 PEAK1Q9H792 1746 aa32.29■■■□□ 2.76
COL9A3-213ENST00000489045 TMF1P82094 1093 aa32.29■■■□□ 2.76
COL9A3-213ENST00000489045 ANKRD36BQ8N2N9 1353 aa32.25■■■□□ 2.75
COL9A3-213ENST00000489045 CARD10Q9BWT7 1032 aa32.25■■■□□ 2.75
COL9A3-213ENST00000489045 SBF2Q86WG5 1849 aa32.25■■■□□ 2.75
COL9A3-213ENST00000489045 SRCAPQ6ZRS2 3230 aa32.24■■■□□ 2.75
COL9A3-213ENST00000489045 DDB1Q16531 1140 aa32.24■■■□□ 2.75
COL9A3-213ENST00000489045 OVOS2A0A0G2JMS6 1433 aa32.24■■■□□ 2.75
COL9A3-213ENST00000489045 APBA3O96018 575 aa32.22■■■□□ 2.75
COL9A3-213ENST00000489045 EZH2Q15910 746 aaKnown RBP32.22■■■□□ 2.75
COL9A3-213ENST00000489045 RREB1Q92766 1687 aa32.21■■■□□ 2.75
COL9A3-213ENST00000489045 ERBB3P21860 1342 aa32.21■■■□□ 2.75
COL9A3-213ENST00000489045 MYOM1P52179 1685 aa32.21■■■□□ 2.75
COL9A3-213ENST00000489045 CCDC7Q96M83 1385 aa32.2■■■□□ 2.75
COL9A3-213ENST00000489045 CDCA7Q9BWT1 371 aaPredicted RBP32.2■■■□□ 2.75
COL9A3-213ENST00000489045 CAMKK2Q96RR4 588 aa32.19■■■□□ 2.74
COL9A3-213ENST00000489045 C11orf95C9JLR9 678 aaPredicted RBP32.17■■■□□ 2.74
COL9A3-213ENST00000489045 KIF20BQ96Q89 1820 aa32.16■■■□□ 2.74
COL9A3-213ENST00000489045 PSDA5PKW4 1024 aaPredicted RBP32.16■■■□□ 2.74
COL9A3-213ENST00000489045 CDCA8Q53HL2 280 aa32.16■■■□□ 2.74
COL9A3-213ENST00000489045 COG3Q96JB2 828 aa32.16■■■□□ 2.74
COL9A3-213ENST00000489045 NUP188Q5SRE5 1749 aa32.16■■■□□ 2.74
COL9A3-213ENST00000489045 PARD3Q8TEW0 1356 aa32.16■■■□□ 2.74
COL9A3-213ENST00000489045 FAM208AQ9UK61 1670 aaKnown RBP32.15■■■□□ 2.74
COL9A3-213ENST00000489045 CCER1Q8TC90 406 aaPredicted RBP32.14■■■□□ 2.74
COL9A3-213ENST00000489045 ANKRD24Q8TF21 1146 aa32.14■■■□□ 2.74
COL9A3-213ENST00000489045 NLRP2Q9NX02 1062 aa32.13■■■□□ 2.73
COL9A3-213ENST00000489045 MARCH10Q8NA82 808 aaPredicted RBP32.12■■■□□ 2.73
COL9A3-213ENST00000489045 RGPD3A6NKT7 1758 aaPredicted RBP32.12■■■□□ 2.73
COL9A3-213ENST00000489045 RGPD4Q7Z3J3 1758 aa32.12■■■□□ 2.73
COL9A3-213ENST00000489045 TNS2Q63HR2 1409 aa32.11■■■□□ 2.73
COL9A3-213ENST00000489045 LRP5O75197 1615 aa32.11■■■□□ 2.73
COL9A3-213ENST00000489045 IP6K1Q92551 441 aa32.1■■■□□ 2.73
COL9A3-213ENST00000489045 EXOC5O00471 708 aa32.08■■■□□ 2.73
COL9A3-213ENST00000489045 BCL9O00512 1426 aa32.08■■■□□ 2.73
COL9A3-213ENST00000489045 MAP3K19Q56UN5 1328 aa32.07■■■□□ 2.72
COL9A3-213ENST00000489045 R3HDM1Q15032 1099 aaKnown RBP32.07■■■□□ 2.72
COL9A3-213ENST00000489045 FYB1O15117 783 aa32.06■■■□□ 2.72
COL9A3-213ENST00000489045 FBLN1P23142 703 aa32.06■■■□□ 2.72
COL9A3-213ENST00000489045 GGNBP2Q9H3C7 697 aa32.06■■■□□ 2.72
COL9A3-213ENST00000489045 RGPD2P0DJD1 1756 aa32.05■■■□□ 2.72
COL9A3-213ENST00000489045 IL2RBP14784 551 aa32.03■■■□□ 2.72
COL9A3-213ENST00000489045 LTV1Q96GA3 475 aaPredicted RBP32.03■■■□□ 2.72
COL9A3-213ENST00000489045 HOXC9P31274 260 aa32.02■■■□□ 2.72
COL9A3-213ENST00000489045 AMPHP49418 695 aa32.02■■■□□ 2.72
COL9A3-213ENST00000489045 PTF1AQ7RTS3 328 aa32.02■■■□□ 2.72
COL9A3-213ENST00000489045 BCL11BQ9C0K0 894 aaPredicted RBP32.02■■■□□ 2.72
COL9A3-213ENST00000489045 NSD3Q9BZ95 1437 aa32■■■□□ 2.71
COL9A3-213ENST00000489045 NHSQ6T4R5 1651 aa32■■■□□ 2.71
COL9A3-213ENST00000489045 RTL1A6NKG5 1358 aa32■■■□□ 2.71
COL9A3-213ENST00000489045 CARD14Q9BXL6 1004 aa31.99■■■□□ 2.71
COL9A3-213ENST00000489045 RRS1Q15050 365 aaKnown RBP31.98■■■□□ 2.71
COL9A3-213ENST00000489045 PLSCR1O15162 318 aa31.96■■■□□ 2.71
COL9A3-213ENST00000489045 EIF4G2P78344 907 aaKnown RBP eCLIP31.94■■■□□ 2.7
COL9A3-213ENST00000489045 NBPF14Q5TI25 921 aa31.94■■■□□ 2.7
COL9A3-213ENST00000489045 HSPA5P11021 654 aaKnown RBP31.93■■■□□ 2.7
COL9A3-213ENST00000489045 POLR3GLQ9BT43 218 aa31.92■■■□□ 2.7
COL9A3-213ENST00000489045 KAT6BQ8WYB5 2073 aa31.91■■■□□ 2.7
COL9A3-213ENST00000489045 SHANK3Q9BYB0 1731 aa31.9■■■□□ 2.7
COL9A3-213ENST00000489045 BTAF1O14981 1849 aa31.89■■■□□ 2.7
COL9A3-213ENST00000489045 KCNQ2O43526 872 aa31.89■■■□□ 2.7
COL9A3-213ENST00000489045 ACSBG1Q96GR2 724 aa31.89■■■□□ 2.7
COL9A3-213ENST00000489045 SMG6Q86US8 1419 aaKnown RBP31.88■■■□□ 2.69
COL9A3-213ENST00000489045 ANKRD26Q9UPS8 1709 aa31.87■■■□□ 2.69
COL9A3-213ENST00000489045 FLT4P35916 1363 aa31.86■■■□□ 2.69
COL9A3-213ENST00000489045 MEGF6O75095 1541 aa31.85■■■□□ 2.69
COL9A3-213ENST00000489045 KIF24Q5T7B8 1368 aa31.85■■■□□ 2.69
COL9A3-213ENST00000489045 MAP2P11137 1827 aaKnown RBP31.85■■■□□ 2.69
COL9A3-213ENST00000489045 PROM2Q8N271 834 aa31.85■■■□□ 2.69
COL9A3-213ENST00000489045 INSRP06213 1382 aa31.84■■■□□ 2.69
COL9A3-213ENST00000489045 CGNL1Q0VF96 1302 aa31.83■■■□□ 2.69
COL9A3-213ENST00000489045 HSP90AB2PQ58FF8 381 aa31.83■■■□□ 2.69
COL9A3-213ENST00000489045 NBPF6Q5VWK0 638 aa31.83■■■□□ 2.69
COL9A3-213ENST00000489045 DDX54Q8TDD1 881 aaKnown RBP31.83■■■□□ 2.69
COL9A3-213ENST00000489045 NBPF4Q96M43 638 aa31.83■■■□□ 2.69
COL9A3-213ENST00000489045 ANO8Q9HCE9 1232 aaPredicted RBP31.83■■■□□ 2.69
COL9A3-213ENST00000489045 DOT1LQ8TEK3 1739 aa31.83■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms