RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 CCDC61Q9Y6R9 512 aa13.64□□□□□ -0.23
COL17A1-207ENST00000488320 DCAF11Q8TEB1 546 aa13.63□□□□□ -0.23
COL17A1-207ENST00000488320 LMO7Q8WWI1 1683 aa13.63□□□□□ -0.23
COL17A1-207ENST00000488320 COL5A2P05997 1499 aaPredicted RBP13.62□□□□□ -0.23
COL17A1-207ENST00000488320 PEAK1Q9H792 1746 aa13.62□□□□□ -0.23
COL17A1-207ENST00000488320 PELP1Q8IZL8 1130 aaKnown RBP13.62□□□□□ -0.23
COL17A1-207ENST00000488320 MARCH10Q8NA82 808 aaPredicted RBP13.62□□□□□ -0.23
COL17A1-207ENST00000488320 POLR3AO14802 1390 aaPredicted RBP13.61□□□□□ -0.23
COL17A1-207ENST00000488320 PLEKHG3A1L390 1219 aa13.61□□□□□ -0.23
COL17A1-207ENST00000488320 KLHL34Q8N239 644 aa13.61□□□□□ -0.23
COL17A1-207ENST00000488320 USP19O94966 1318 aa13.61□□□□□ -0.23
COL17A1-207ENST00000488320 CDCA7Q9BWT1 371 aaPredicted RBP13.6□□□□□ -0.23
COL17A1-207ENST00000488320 EXOC5O00471 708 aa13.59□□□□□ -0.23
COL17A1-207ENST00000488320 NLRP6P59044 892 aa13.59□□□□□ -0.23
COL17A1-207ENST00000488320 LRRC37A3O60309 1634 aa13.58□□□□□ -0.24
COL17A1-207ENST00000488320 CSB-PGBD3P0DP91 1061 aa13.58□□□□□ -0.24
COL17A1-207ENST00000488320 SGIP1Q9BQI5 828 aa13.58□□□□□ -0.24
COL17A1-207ENST00000488320 AKAP12Q02952 1782 aa13.58□□□□□ -0.24
COL17A1-207ENST00000488320 SRPK2P78362 688 aaKnown RBP13.57□□□□□ -0.24
COL17A1-207ENST00000488320 AATKQ6ZMQ8 1374 aa13.57□□□□□ -0.24
COL17A1-207ENST00000488320 STAC3Q96MF2 364 aa13.56□□□□□ -0.24
COL17A1-207ENST00000488320 ARHGEF28Q8N1W1 1705 aaKnown RBP13.56□□□□□ -0.24
COL17A1-207ENST00000488320 ACSBG1Q96GR2 724 aa13.55□□□□□ -0.24
COL17A1-207ENST00000488320 WDR17Q8IZU2 1322 aa13.55□□□□□ -0.24
COL17A1-207ENST00000488320 KAT6BQ8WYB5 2073 aa13.54□□□□□ -0.24
COL17A1-207ENST00000488320 POLD1P28340 1107 aa13.54□□□□□ -0.24
COL17A1-207ENST00000488320 AXIN2Q9Y2T1 843 aa13.54□□□□□ -0.24
COL17A1-207ENST00000488320 BCL9O00512 1426 aa13.54□□□□□ -0.24
COL17A1-207ENST00000488320 TOPAZ1Q8N9V7 1692 aa13.53□□□□□ -0.24
COL17A1-207ENST00000488320 CARD10Q9BWT7 1032 aa13.53□□□□□ -0.24
COL17A1-207ENST00000488320 CABP2Q9NPB3 220 aa13.53□□□□□ -0.24
COL17A1-207ENST00000488320 MAP3K5Q99683 1374 aa13.53□□□□□ -0.24
COL17A1-207ENST00000488320 PPIP5K1Q6PFW1 1433 aa13.53□□□□□ -0.24
COL17A1-207ENST00000488320 SOX12O15370 315 aa13.52□□□□□ -0.25
COL17A1-207ENST00000488320 BRD4O60885 1362 aaPredicted RBP13.51□□□□□ -0.25
COL17A1-207ENST00000488320 WNK3Q9BYP7 1800 aa13.5□□□□□ -0.25
COL17A1-207ENST00000488320 SLC16A10Q8TF71 515 aa13.5□□□□□ -0.25
COL17A1-207ENST00000488320 CABP1Q9NZU7 370 aa13.5□□□□□ -0.25
COL17A1-207ENST00000488320 GRIN3BO60391 1043 aa13.49□□□□□ -0.25
COL17A1-207ENST00000488320 KCNH5Q8NCM2 988 aa13.49□□□□□ -0.25
COL17A1-207ENST00000488320 RGPD5Q99666 1765 aa13.49□□□□□ -0.25
COL17A1-207ENST00000488320 COL18A1P39060 1754 aa13.48□□□□□ -0.25
COL17A1-207ENST00000488320 ZNF827Q17R98 1081 aa13.48□□□□□ -0.25
COL17A1-207ENST00000488320 ARHGEF25Q86VW2 580 aa13.48□□□□□ -0.25
COL17A1-207ENST00000488320 CCDC7Q96M83 1385 aa13.47□□□□□ -0.25
COL17A1-207ENST00000488320 NLGN2Q8NFZ4 835 aa13.47□□□□□ -0.25
COL17A1-207ENST00000488320 SLIT3O75094 1523 aa13.47□□□□□ -0.25
COL17A1-207ENST00000488320 CEP350Q5VT06 3117 aa13.47□□□□□ -0.25
COL17A1-207ENST00000488320 USP6P35125 1406 aa13.47□□□□□ -0.25
COL17A1-207ENST00000488320 LRRC4BQ9NT99 713 aa13.46□□□□□ -0.25
COL17A1-207ENST00000488320 TFCP2L1Q9NZI6 479 aa13.46□□□□□ -0.25
COL17A1-207ENST00000488320 CPSF1Q10570 1443 aaKnown RBP13.46□□□□□ -0.26
COL17A1-207ENST00000488320 CENPJQ9HC77 1338 aaPredicted RBP13.45□□□□□ -0.26
COL17A1-207ENST00000488320 SHANK3Q9BYB0 1731 aa13.45□□□□□ -0.26
COL17A1-207ENST00000488320 NHSQ6T4R5 1651 aa13.45□□□□□ -0.26
COL17A1-207ENST00000488320 ADRA2BP18089 450 aa13.45□□□□□ -0.26
COL17A1-207ENST00000488320 GPBP1L1Q9HC44 474 aaPredicted RBP13.45□□□□□ -0.26
COL17A1-207ENST00000488320 HSPA6P17066 643 aa13.44□□□□□ -0.26
COL17A1-207ENST00000488320 AKT1S1Q96B36 256 aa13.44□□□□□ -0.26
COL17A1-207ENST00000488320 NLRP2Q9NX02 1062 aa13.44□□□□□ -0.26
COL17A1-207ENST00000488320 TNS2Q63HR2 1409 aa13.44□□□□□ -0.26
COL17A1-207ENST00000488320 BTAF1O14981 1849 aa13.43□□□□□ -0.26
COL17A1-207ENST00000488320 YBX3P16989 372 aaKnown RBP eCLIP13.43□□□□□ -0.26
COL17A1-207ENST00000488320 NBPF1Q3BBV0 1214 aa13.43□□□□□ -0.26
COL17A1-207ENST00000488320 SLC27A3Q5K4L6 730 aa13.43□□□□□ -0.26
COL17A1-207ENST00000488320 ZNF526Q8TF50 670 aaPredicted RBP13.43□□□□□ -0.26
COL17A1-207ENST00000488320 ZNF692Q9BU19 519 aaPredicted RBP13.43□□□□□ -0.26
COL17A1-207ENST00000488320 GOLGB1Q14789 3259 aaKnown RBP13.43□□□□□ -0.26
COL17A1-207ENST00000488320 PNPLA7Q6ZV29 1317 aa13.42□□□□□ -0.26
COL17A1-207ENST00000488320 TTC21BQ7Z4L5 1316 aa13.42□□□□□ -0.26
COL17A1-207ENST00000488320 ATP10DQ9P241 1426 aa13.42□□□□□ -0.26
COL17A1-207ENST00000488320 IL2RBP14784 551 aa13.42□□□□□ -0.26
COL17A1-207ENST00000488320 PAPPAQ13219 1627 aa13.42□□□□□ -0.26
COL17A1-207ENST00000488320 PIK3C2AO00443 1686 aa13.41□□□□□ -0.26
COL17A1-207ENST00000488320 RAB3GAP2Q9H2M9 1393 aa13.41□□□□□ -0.26
COL17A1-207ENST00000488320 KCNQ4P56696 695 aa13.4□□□□□ -0.26
COL17A1-207ENST00000488320 DDX54Q8TDD1 881 aaKnown RBP13.4□□□□□ -0.26
COL17A1-207ENST00000488320 SYTL4Q96C24 671 aaPredicted RBP13.4□□□□□ -0.26
COL17A1-207ENST00000488320 EVC2Q86UK5 1308 aa13.39□□□□□ -0.27
COL17A1-207ENST00000488320 TTC21AQ8NDW8 1320 aa13.39□□□□□ -0.27
COL17A1-207ENST00000488320 QRICH2Q9H0J4 1663 aa13.38□□□□□ -0.27
COL17A1-207ENST00000488320 QSER1Q2KHR3 1735 aa13.38□□□□□ -0.27
COL17A1-207ENST00000488320 KIAA1210Q9ULL0 1709 aa13.38□□□□□ -0.27
COL17A1-207ENST00000488320 TRPM1Q7Z4N2 1603 aa13.38□□□□□ -0.27
COL17A1-207ENST00000488320 ABCC6O95255 1503 aa13.37□□□□□ -0.27
COL17A1-207ENST00000488320 MSL1Q68DK7 614 aa13.36□□□□□ -0.27
COL17A1-207ENST00000488320 ANKRD24Q8TF21 1146 aa13.36□□□□□ -0.27
COL17A1-207ENST00000488320 COL24A1Q17RW2 1714 aa13.36□□□□□ -0.27
COL17A1-207ENST00000488320 PRIM1P49642 420 aaKnown RBP13.35□□□□□ -0.27
COL17A1-207ENST00000488320 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.35□□□□□ -0.27
COL17A1-207ENST00000488320 ERBB3P21860 1342 aa13.35□□□□□ -0.27
COL17A1-207ENST00000488320 TUBGCP6Q96RT7 1819 aa13.34□□□□□ -0.27
COL17A1-207ENST00000488320 KTN1Q86UP2 1357 aaKnown RBP13.34□□□□□ -0.27
COL17A1-207ENST00000488320 COL23A1Q86Y22 540 aaPredicted RBP13.34□□□□□ -0.27
COL17A1-207ENST00000488320 CCNL1Q9UK58 526 aaPredicted RBP13.34□□□□□ -0.27
COL17A1-207ENST00000488320 CD2APQ9Y5K6 639 aa13.33□□□□□ -0.28
COL17A1-207ENST00000488320 NFAT5O94916 1531 aa13.33□□□□□ -0.28
COL17A1-207ENST00000488320 APLP1P51693 650 aa13.32□□□□□ -0.28
COL17A1-207ENST00000488320 LTV1Q96GA3 475 aaPredicted RBP13.31□□□□□ -0.28
COL17A1-207ENST00000488320 WWC3Q9ULE0 1092 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms