RNA–Protein interactions for RNA: ENST00000488058.1

RNF38-208, Transcript of ring finger protein 38, human

TSL 3

Gene RNF38, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF38-208	ENST00000488058	AXIN2	Q9Y2T1	843 aa		33.09	■■■□□ 2.89
RNF38-208	ENST00000488058	CRB1	P82279	1406 aa		33.09	■■■□□ 2.89
RNF38-208	ENST00000488058	FAM182B	Q5T319	152 aa		33.08	■■■□□ 2.89
RNF38-208	ENST00000488058	BARGIN	Q6ZT62	677 aa		33.07	■■■□□ 2.88
RNF38-208	ENST00000488058	TOM1L2	Q6ZVM7	507 aa		33.07	■■■□□ 2.88
RNF38-208	ENST00000488058	BLM	P54132	1417 aa	Predicted RBP	33.07	■■■□□ 2.88
RNF38-208	ENST00000488058	LTN1	O94822	1766 aa		33.06	■■■□□ 2.88
RNF38-208	ENST00000488058	OVOS2	A0A0J9YW53	1432 aa		33.05	■■■□□ 2.88
RNF38-208	ENST00000488058	OVOS2	Q6IE36	1432 aa		33.05	■■■□□ 2.88
RNF38-208	ENST00000488058	CSB-PGBD3	P0DP91	1061 aa		33.04	■■■□□ 2.88
RNF38-208	ENST00000488058	EIF4G2	P78344	907 aa	Known RBP eCLIP	33.04	■■■□□ 2.88
RNF38-208	ENST00000488058	SF3B2	Q13435	895 aa	Known RBP	33.04	■■■□□ 2.88
RNF38-208	ENST00000488058	POLR3GL	Q9BT43	218 aa		33.03	■■■□□ 2.88
RNF38-208	ENST00000488058	THRAP3	Q9Y2W1	955 aa	Known RBP	33.03	■■■□□ 2.88
RNF38-208	ENST00000488058	MYOM1	P52179	1685 aa		33.03	■■■□□ 2.88
RNF38-208	ENST00000488058	WDR17	Q8IZU2	1322 aa		33.02	■■■□□ 2.88
RNF38-208	ENST00000488058	EP400	Q96L91	3159 aa		33.02	■■■□□ 2.88
RNF38-208	ENST00000488058	HSPA5	P11021	654 aa	Known RBP	33.01	■■■□□ 2.87
RNF38-208	ENST00000488058	COG3	Q96JB2	828 aa		33.01	■■■□□ 2.87
RNF38-208	ENST00000488058	ABCC6	O95255	1503 aa		32.99	■■■□□ 2.87
RNF38-208	ENST00000488058	PDE3B	Q13370	1112 aa		32.98	■■■□□ 2.87
RNF38-208	ENST00000488058	PARP4	Q9UKK3	1724 aa	Known RBP	32.96	■■■□□ 2.87
RNF38-208	ENST00000488058	DEFB132	Q7Z7B7	95 aa		32.95	■■■□□ 2.87
RNF38-208	ENST00000488058	KIF20B	Q96Q89	1820 aa		32.95	■■■□□ 2.86
RNF38-208	ENST00000488058	WNK3	Q9BYP7	1800 aa		32.95	■■■□□ 2.86
RNF38-208	ENST00000488058	GGNBP2	Q9H3C7	697 aa		32.94	■■■□□ 2.86
RNF38-208	ENST00000488058	RGPD1	P0DJD0	1748 aa		32.93	■■■□□ 2.86
RNF38-208	ENST00000488058	FYB1	O15117	783 aa		32.91	■■■□□ 2.86
RNF38-208	ENST00000488058	CARD10	Q9BWT7	1032 aa		32.91	■■■□□ 2.86
RNF38-208	ENST00000488058	FAM196A	Q6ZSG2	479 aa		32.9	■■■□□ 2.86
RNF38-208	ENST00000488058	NSD3	Q9BZ95	1437 aa		32.9	■■■□□ 2.86
RNF38-208	ENST00000488058	LRRC37A3	O60309	1634 aa		32.9	■■■□□ 2.86
RNF38-208	ENST00000488058	ERBB3	P21860	1342 aa		32.88	■■■□□ 2.85
RNF38-208	ENST00000488058	FBLN1	P23142	703 aa		32.88	■■■□□ 2.85
RNF38-208	ENST00000488058	ANKRD24	Q8TF21	1146 aa		32.88	■■■□□ 2.85
RNF38-208	ENST00000488058	CARD14	Q9BXL6	1004 aa		32.88	■■■□□ 2.85
RNF38-208	ENST00000488058	BAG6	P46379	1132 aa		32.87	■■■□□ 2.85
RNF38-208	ENST00000488058	NLRP2	Q9NX02	1062 aa		32.87	■■■□□ 2.85
RNF38-208	ENST00000488058	DDB1	Q16531	1140 aa		32.86	■■■□□ 2.85
RNF38-208	ENST00000488058	CCDC7	Q96M83	1385 aa		32.85	■■■□□ 2.85
RNF38-208	ENST00000488058	MAP3K19	Q56UN5	1328 aa		32.85	■■■□□ 2.85
RNF38-208	ENST00000488058	TRIM37	O94972	964 aa		32.85	■■■□□ 2.85
RNF38-208	ENST00000488058	TNS1	Q9HBL0	1735 aa	Known RBP	32.85	■■■□□ 2.85
RNF38-208	ENST00000488058	AMPH	P49418	695 aa		32.84	■■■□□ 2.85
RNF38-208	ENST00000488058	IP6K1	Q92551	441 aa		32.84	■■■□□ 2.85
RNF38-208	ENST00000488058	LTV1	Q96GA3	475 aa	Predicted RBP	32.84	■■■□□ 2.85
RNF38-208	ENST00000488058	CDCA7	Q9BWT1	371 aa	Predicted RBP	32.83	■■■□□ 2.85
RNF38-208	ENST00000488058	RRS1	Q15050	365 aa	Known RBP	32.8	■■■□□ 2.84
RNF38-208	ENST00000488058	DISP2	A7MBM2	1401 aa		32.79	■■■□□ 2.84
RNF38-208	ENST00000488058	HOXC9	P31274	260 aa		32.79	■■■□□ 2.84
RNF38-208	ENST00000488058	EN1	Q05925	392 aa	Predicted RBP	32.79	■■■□□ 2.84
RNF38-208	ENST00000488058	OVOS2	A0A0G2JMS6	1433 aa		32.78	■■■□□ 2.84
RNF38-208	ENST00000488058	FAM208A	Q9UK61	1670 aa	Known RBP	32.76	■■■□□ 2.84
RNF38-208	ENST00000488058	PEAK1	Q9H792	1746 aa		32.75	■■■□□ 2.83
RNF38-208	ENST00000488058	CGNL1	Q0VF96	1302 aa		32.75	■■■□□ 2.83
RNF38-208	ENST00000488058	EXOC5	O00471	708 aa		32.74	■■■□□ 2.83
RNF38-208	ENST00000488058	APBA3	O96018	575 aa		32.74	■■■□□ 2.83
RNF38-208	ENST00000488058	RTL1	A6NKG5	1358 aa		32.73	■■■□□ 2.83
RNF38-208	ENST00000488058	C11orf95	C9JLR9	678 aa	Predicted RBP	32.73	■■■□□ 2.83
RNF38-208	ENST00000488058	IL2RB	P14784	551 aa		32.72	■■■□□ 2.83
RNF38-208	ENST00000488058	MARCH10	Q8NA82	808 aa	Predicted RBP	32.72	■■■□□ 2.83
RNF38-208	ENST00000488058	RGPD2	P0DJD1	1756 aa		32.7	■■■□□ 2.83
RNF38-208	ENST00000488058	TNS2	Q63HR2	1409 aa		32.7	■■■□□ 2.83
RNF38-208	ENST00000488058	PANK3	Q9H999	370 aa		32.7	■■■□□ 2.83
RNF38-208	ENST00000488058	SBF2	Q86WG5	1849 aa		32.69	■■■□□ 2.82
RNF38-208	ENST00000488058	EZH2	Q15910	746 aa	Known RBP	32.68	■■■□□ 2.82
RNF38-208	ENST00000488058	SMG6	Q86US8	1419 aa	Known RBP	32.66	■■■□□ 2.82
RNF38-208	ENST00000488058	ANKRD26	Q9UPS8	1709 aa		32.65	■■■□□ 2.82
RNF38-208	ENST00000488058	FLT4	P35916	1363 aa		32.64	■■■□□ 2.82
RNF38-208	ENST00000488058	EMILIN1	Q9Y6C2	1016 aa		32.64	■■■□□ 2.82
RNF38-208	ENST00000488058	PPM1G	O15355	546 aa	Predicted RBP	32.63	■■■□□ 2.81
RNF38-208	ENST00000488058	HSP90AB2P	Q58FF8	381 aa		32.63	■■■□□ 2.81
RNF38-208	ENST00000488058	KIF7	Q2M1P5	1343 aa		32.62	■■■□□ 2.81
RNF38-208	ENST00000488058	CAMKK2	Q96RR4	588 aa		32.62	■■■□□ 2.81
RNF38-208	ENST00000488058	MAP2	P11137	1827 aa	Known RBP	32.61	■■■□□ 2.81
RNF38-208	ENST00000488058	INSR	P06213	1382 aa		32.6	■■■□□ 2.81
RNF38-208	ENST00000488058	TNNT2	P45379	298 aa	Predicted RBP	32.6	■■■□□ 2.81
RNF38-208	ENST00000488058	KIF24	Q5T7B8	1368 aa		32.59	■■■□□ 2.81
RNF38-208	ENST00000488058	USHBP1	Q8N6Y0	703 aa		32.59	■■■□□ 2.81
RNF38-208	ENST00000488058	NBPF6	Q5VWK0	638 aa		32.58	■■■□□ 2.81
RNF38-208	ENST00000488058	PTF1A	Q7RTS3	328 aa		32.58	■■■□□ 2.81
RNF38-208	ENST00000488058	NBPF4	Q96M43	638 aa		32.58	■■■□□ 2.81
RNF38-208	ENST00000488058	BCL9	O00512	1426 aa		32.58	■■■□□ 2.81
RNF38-208	ENST00000488058	PARD3	Q8TEW0	1356 aa		32.58	■■■□□ 2.81
RNF38-208	ENST00000488058	PSD	A5PKW4	1024 aa	Predicted RBP	32.57	■■■□□ 2.8
RNF38-208	ENST00000488058	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.57	■■■□□ 2.8
RNF38-208	ENST00000488058	RREB1	Q92766	1687 aa		32.56	■■■□□ 2.8
RNF38-208	ENST00000488058	DDX54	Q8TDD1	881 aa	Known RBP	32.54	■■■□□ 2.8
RNF38-208	ENST00000488058	ACSBG1	Q96GR2	724 aa		32.54	■■■□□ 2.8
RNF38-208	ENST00000488058	MEGF6	O75095	1541 aa		32.53	■■■□□ 2.8
RNF38-208	ENST00000488058	KNSTRN	Q9Y448	316 aa		32.53	■■■□□ 2.8
RNF38-208	ENST00000488058	NUP188	Q5SRE5	1749 aa		32.52	■■■□□ 2.8
RNF38-208	ENST00000488058	NSD2	O96028	1365 aa		32.52	■■■□□ 2.8
RNF38-208	ENST00000488058	POLK	Q9UBT6	870 aa		32.51	■■■□□ 2.79
RNF38-208	ENST00000488058	NHS	Q6T4R5	1651 aa		32.5	■■■□□ 2.79
RNF38-208	ENST00000488058	RAPGEF4	Q8WZA2	1011 aa		32.5	■■■□□ 2.79
RNF38-208	ENST00000488058	KAT6B	Q8WYB5	2073 aa		32.49	■■■□□ 2.79
RNF38-208	ENST00000488058	KCNQ2	O43526	872 aa		32.49	■■■□□ 2.79
RNF38-208	ENST00000488058	R3HDM1	Q15032	1099 aa	Known RBP	32.49	■■■□□ 2.79
RNF38-208	ENST00000488058	RGPD3	A6NKT7	1758 aa	Predicted RBP	32.48	■■■□□ 2.79

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