RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 NME9Q86XW9 330 aa17.37■□□□□ 0.37
SDC3-204ENST00000487984 PUS7Q96PZ0 661 aaKnown RBP17.37■□□□□ 0.37
SDC3-204ENST00000487984 WDR17Q8IZU2 1322 aa17.37■□□□□ 0.37
SDC3-204ENST00000487984 USP31Q70CQ4 1352 aa17.37■□□□□ 0.37
SDC3-204ENST00000487984 TNS1Q9HBL0 1735 aaKnown RBP17.36■□□□□ 0.37
SDC3-204ENST00000487984 A0A1W2PP64 1363 aa17.36■□□□□ 0.37
SDC3-204ENST00000487984 EDC4Q6P2E9 1401 aaKnown RBP17.35■□□□□ 0.37
SDC3-204ENST00000487984 EZH2Q15910 746 aaKnown RBP17.34■□□□□ 0.37
SDC3-204ENST00000487984 TERF2IPQ9NYB0 399 aa17.34■□□□□ 0.37
SDC3-204ENST00000487984 PARP4Q9UKK3 1724 aaKnown RBP17.34■□□□□ 0.37
SDC3-204ENST00000487984 PSDA5PKW4 1024 aaPredicted RBP17.33■□□□□ 0.36
SDC3-204ENST00000487984 APBA3O96018 575 aa17.33■□□□□ 0.36
SDC3-204ENST00000487984 CAMKK2Q96RR4 588 aa17.33■□□□□ 0.36
SDC3-204ENST00000487984 CSB-PGBD3P0DP91 1061 aa17.32■□□□□ 0.36
SDC3-204ENST00000487984 ABCC6O95255 1503 aa17.31■□□□□ 0.36
SDC3-204ENST00000487984 NINLQ9Y2I6 1382 aa17.31■□□□□ 0.36
SDC3-204ENST00000487984 DDB1Q16531 1140 aa17.31■□□□□ 0.36
SDC3-204ENST00000487984 CARD10Q9BWT7 1032 aa17.31■□□□□ 0.36
SDC3-204ENST00000487984 USP54Q70EL1 1684 aa17.31■□□□□ 0.36
SDC3-204ENST00000487984 LRRC37A3O60309 1634 aa17.31■□□□□ 0.36
SDC3-204ENST00000487984 OVOS2A0A0G2JMS6 1433 aa17.3■□□□□ 0.36
SDC3-204ENST00000487984 OVOS2A0A0J9YW53 1432 aa17.3■□□□□ 0.36
SDC3-204ENST00000487984 OVOS2Q6IE36 1432 aa17.3■□□□□ 0.36
SDC3-204ENST00000487984 USP47Q96K76 1375 aa17.3■□□□□ 0.36
SDC3-204ENST00000487984 SLC24A1O60721 1099 aa17.3■□□□□ 0.36
SDC3-204ENST00000487984 PARD3Q8TEW0 1356 aa17.29■□□□□ 0.36
SDC3-204ENST00000487984 C11orf95C9JLR9 678 aaPredicted RBP17.29■□□□□ 0.36
SDC3-204ENST00000487984 CDCA7Q9BWT1 371 aaPredicted RBP17.29■□□□□ 0.36
SDC3-204ENST00000487984 PEAK1Q9H792 1746 aa17.27■□□□□ 0.36
SDC3-204ENST00000487984 ERBB3P21860 1342 aa17.27■□□□□ 0.36
SDC3-204ENST00000487984 R3HDM1Q15032 1099 aaKnown RBP17.27■□□□□ 0.36
SDC3-204ENST00000487984 RGPD5Q99666 1765 aa17.27■□□□□ 0.35
SDC3-204ENST00000487984 CCDC7Q96M83 1385 aa17.27■□□□□ 0.35
SDC3-204ENST00000487984 MARCH10Q8NA82 808 aaPredicted RBP17.26■□□□□ 0.35
SDC3-204ENST00000487984 WNK3Q9BYP7 1800 aa17.26■□□□□ 0.35
SDC3-204ENST00000487984 TMF1P82094 1093 aa17.25■□□□□ 0.35
SDC3-204ENST00000487984 PCGF6Q9BYE7 350 aa17.25■□□□□ 0.35
SDC3-204ENST00000487984 ANKRD36BQ8N2N9 1353 aa17.25■□□□□ 0.35
SDC3-204ENST00000487984 ANKRD24Q8TF21 1146 aa17.24■□□□□ 0.35
SDC3-204ENST00000487984 NLRP2Q9NX02 1062 aa17.24■□□□□ 0.35
SDC3-204ENST00000487984 TIMELESSQ9UNS1 1208 aa17.24■□□□□ 0.35
SDC3-204ENST00000487984 LRP5O75197 1615 aa17.24■□□□□ 0.35
SDC3-204ENST00000487984 CLSPNQ9HAW4 1339 aa17.23■□□□□ 0.35
SDC3-204ENST00000487984 BCL9O00512 1426 aa17.23■□□□□ 0.35
SDC3-204ENST00000487984 EXOC5O00471 708 aa17.22■□□□□ 0.35
SDC3-204ENST00000487984 PTF1AQ7RTS3 328 aa17.22■□□□□ 0.35
SDC3-204ENST00000487984 COG3Q96JB2 828 aa17.22■□□□□ 0.35
SDC3-204ENST00000487984 BCL11BQ9C0K0 894 aaPredicted RBP17.22■□□□□ 0.35
SDC3-204ENST00000487984 RREB1Q92766 1687 aa17.22■□□□□ 0.35
SDC3-204ENST00000487984 LTN1O94822 1766 aa17.22■□□□□ 0.35
SDC3-204ENST00000487984 TNS2Q63HR2 1409 aa17.21■□□□□ 0.35
SDC3-204ENST00000487984 IP6K1Q92551 441 aa17.21■□□□□ 0.35
SDC3-204ENST00000487984 NUP188Q5SRE5 1749 aa17.2■□□□□ 0.34
SDC3-204ENST00000487984 PLSCR1O15162 318 aa17.19■□□□□ 0.34
SDC3-204ENST00000487984 IL2RBP14784 551 aa17.19■□□□□ 0.34
SDC3-204ENST00000487984 FBLN1P23142 703 aa17.19■□□□□ 0.34
SDC3-204ENST00000487984 CDCA8Q53HL2 280 aa17.19■□□□□ 0.34
SDC3-204ENST00000487984 MAP3K19Q56UN5 1328 aa17.19■□□□□ 0.34
SDC3-204ENST00000487984 NBPF14Q5TI25 921 aa17.18■□□□□ 0.34
SDC3-204ENST00000487984 SBF2Q86WG5 1849 aa17.17■□□□□ 0.34
SDC3-204ENST00000487984 FYB1O15117 783 aa17.17■□□□□ 0.34
SDC3-204ENST00000487984 LTV1Q96GA3 475 aaPredicted RBP17.17■□□□□ 0.34
SDC3-204ENST00000487984 HOXC9P31274 260 aa17.16■□□□□ 0.34
SDC3-204ENST00000487984 GGNBP2Q9H3C7 697 aa17.16■□□□□ 0.34
SDC3-204ENST00000487984 AMPHP49418 695 aa17.15■□□□□ 0.34
SDC3-204ENST00000487984 RGPD3A6NKT7 1758 aaPredicted RBP17.15■□□□□ 0.34
SDC3-204ENST00000487984 RGPD4Q7Z3J3 1758 aa17.15■□□□□ 0.34
SDC3-204ENST00000487984 KCNQ2O43526 872 aa17.14■□□□□ 0.33
SDC3-204ENST00000487984 RRS1Q15050 365 aaKnown RBP17.14■□□□□ 0.33
SDC3-204ENST00000487984 PROM2Q8N271 834 aa17.14■□□□□ 0.33
SDC3-204ENST00000487984 RTL1A6NKG5 1358 aa17.14■□□□□ 0.33
SDC3-204ENST00000487984 ACSBG1Q96GR2 724 aa17.13■□□□□ 0.33
SDC3-204ENST00000487984 ANO8Q9HCE9 1232 aaPredicted RBP17.13■□□□□ 0.33
SDC3-204ENST00000487984 CARD14Q9BXL6 1004 aa17.12■□□□□ 0.33
SDC3-204ENST00000487984 NSD3Q9BZ95 1437 aa17.11■□□□□ 0.33
SDC3-204ENST00000487984 MYOM1P52179 1685 aa17.1■□□□□ 0.33
SDC3-204ENST00000487984 TXNRD1Q16881 649 aa17.1■□□□□ 0.33
SDC3-204ENST00000487984 CCER1Q8TC90 406 aaPredicted RBP17.1■□□□□ 0.33
SDC3-204ENST00000487984 FAM208AQ9UK61 1670 aaKnown RBP17.1■□□□□ 0.33
SDC3-204ENST00000487984 NHSQ6T4R5 1651 aa17.09■□□□□ 0.33
SDC3-204ENST00000487984 DDX54Q8TDD1 881 aaKnown RBP17.08■□□□□ 0.32
SDC3-204ENST00000487984 NBPF6Q5VWK0 638 aa17.07■□□□□ 0.32
SDC3-204ENST00000487984 NBPF4Q96M43 638 aa17.07■□□□□ 0.32
SDC3-204ENST00000487984 MEGF6O75095 1541 aa17.06■□□□□ 0.32
SDC3-204ENST00000487984 KIF20BQ96Q89 1820 aa17.06■□□□□ 0.32
SDC3-204ENST00000487984 SMG6Q86US8 1419 aaKnown RBP17.05■□□□□ 0.32
SDC3-204ENST00000487984 INSRP06213 1382 aa17.05■□□□□ 0.32
SDC3-204ENST00000487984 FLT4P35916 1363 aa17.05■□□□□ 0.32
SDC3-204ENST00000487984 HSP90AB2PQ58FF8 381 aa17.05■□□□□ 0.32
SDC3-204ENST00000487984 USHBP1Q8N6Y0 703 aa17.05■□□□□ 0.32
SDC3-204ENST00000487984 POLR3GLQ9BT43 218 aa17.05■□□□□ 0.32
SDC3-204ENST00000487984 SPON1Q9HCB6 807 aa17.05■□□□□ 0.32
SDC3-204ENST00000487984 KIF24Q5T7B8 1368 aa17.04■□□□□ 0.32
SDC3-204ENST00000487984 HSPA5P11021 654 aaKnown RBP17.04■□□□□ 0.32
SDC3-204ENST00000487984 EIF4G2P78344 907 aaKnown RBP eCLIP17.04■□□□□ 0.32
SDC3-204ENST00000487984 ZCRB1Q8TBF4 217 aaKnown RBP17.04■□□□□ 0.32
SDC3-204ENST00000487984 PDGFDQ9GZP0 370 aaPredicted RBP17.04■□□□□ 0.32
SDC3-204ENST00000487984 STK32BQ9NY57 414 aa17.04■□□□□ 0.32
SDC3-204ENST00000487984 EMILIN1Q9Y6C2 1016 aa17.04■□□□□ 0.32
SDC3-204ENST00000487984 SLC15A2Q16348 729 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms