RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 GOPCQ9HD26 462 aa10.57□□□□□ -0.72
SMC4-219ENST00000487747 ZBTB33Q86T24 672 aa10.56□□□□□ -0.72
SMC4-219ENST00000487747 MEIOBQ8N635 442 aa10.56□□□□□ -0.72
SMC4-219ENST00000487747 PCMTD1Q96MG8 357 aaPredicted RBP10.56□□□□□ -0.72
SMC4-219ENST00000487747 ADAM32Q8TC27 787 aa10.55□□□□□ -0.72
SMC4-219ENST00000487747 KCTD15Q96SI1 283 aaPredicted RBP10.55□□□□□ -0.72
SMC4-219ENST00000487747 TRIM34Q9BYJ4 488 aa10.55□□□□□ -0.72
SMC4-219ENST00000487747 ZC3H4Q9UPT8 1303 aaKnown RBP10.55□□□□□ -0.72
SMC4-219ENST00000487747 WIPF1O43516 503 aa10.54□□□□□ -0.72
SMC4-219ENST00000487747 CBLBQ13191 982 aa10.54□□□□□ -0.72
SMC4-219ENST00000487747 PPP1R26Q5T8A7 1209 aaPredicted RBP10.54□□□□□ -0.72
SMC4-219ENST00000487747 LINC00528Q8N1L1 170 aa10.54□□□□□ -0.72
SMC4-219ENST00000487747 BMP2P12643 396 aa10.53□□□□□ -0.72
SMC4-219ENST00000487747 PTK2Q05397 1052 aa10.53□□□□□ -0.72
SMC4-219ENST00000487747 TPRNQ4KMQ1 711 aa10.53□□□□□ -0.72
SMC4-219ENST00000487747 SLC10A4Q96EP9 437 aa10.53□□□□□ -0.72
SMC4-219ENST00000487747 EMILIN1Q9Y6C2 1016 aa10.53□□□□□ -0.72
SMC4-219ENST00000487747 ERBB4Q15303 1308 aa10.52□□□□□ -0.73
SMC4-219ENST00000487747 H3BM21 787 aa10.51□□□□□ -0.73
SMC4-219ENST00000487747 GPSM3Q9Y4H4 160 aa10.51□□□□□ -0.73
SMC4-219ENST00000487747 INTS6LQ5JSJ4 861 aaKnown RBP10.5□□□□□ -0.73
SMC4-219ENST00000487747 MAN1A2O60476 641 aa10.49□□□□□ -0.73
SMC4-219ENST00000487747 GMPRP36959 345 aa10.49□□□□□ -0.73
SMC4-219ENST00000487747 TMEM259Q4ZIN3 620 aa10.49□□□□□ -0.73
SMC4-219ENST00000487747 SLC16A10Q8TF71 515 aa10.49□□□□□ -0.73
SMC4-219ENST00000487747 GJD4Q96KN9 370 aaPredicted RBP10.49□□□□□ -0.73
SMC4-219ENST00000487747 DNMT3LQ9UJW3 386 aa10.49□□□□□ -0.73
SMC4-219ENST00000487747 SOS2Q07890 1332 aaPredicted RBP10.49□□□□□ -0.73
SMC4-219ENST00000487747 UPP2O95045 317 aa10.48□□□□□ -0.73
SMC4-219ENST00000487747 Q6ZVU0 165 aa10.48□□□□□ -0.73
SMC4-219ENST00000487747 TMPRSS4Q9NRS4 437 aa10.48□□□□□ -0.73
SMC4-219ENST00000487747 RAB15P59190 212 aa10.47□□□□□ -0.73
SMC4-219ENST00000487747 NPAS3Q8IXF0 933 aa10.47□□□□□ -0.73
SMC4-219ENST00000487747 TSEN34Q9BSV6 310 aaKnown RBP10.47□□□□□ -0.73
SMC4-219ENST00000487747 STK17AQ9UEE5 414 aa10.47□□□□□ -0.73
SMC4-219ENST00000487747 CDV3Q9UKY7 258 aaKnown RBP10.47□□□□□ -0.73
SMC4-219ENST00000487747 AGBL1Q96MI9 1066 aa10.46□□□□□ -0.73
SMC4-219ENST00000487747 PGPEP1Q9NXJ5 209 aa10.46□□□□□ -0.73
SMC4-219ENST00000487747 DZIP3Q86Y13 1208 aaKnown RBP10.44□□□□□ -0.74
SMC4-219ENST00000487747 IRF7Q92985 503 aa10.44□□□□□ -0.74
SMC4-219ENST00000487747 FIGNL2A6NMB9 653 aa10.43□□□□□ -0.74
SMC4-219ENST00000487747 LORP23490 312 aaPredicted RBP10.43□□□□□ -0.74
SMC4-219ENST00000487747 PNMA1Q8ND90 353 aa10.43□□□□□ -0.74
SMC4-219ENST00000487747 ERVH48-1M5A8F1 160 aa10.42□□□□□ -0.74
SMC4-219ENST00000487747 DHX9Q08211 1270 aaKnown RBP10.42□□□□□ -0.74
SMC4-219ENST00000487747 NBPF20Q3BBV1 942 aa10.42□□□□□ -0.74
SMC4-219ENST00000487747 ZNF784Q8NCA9 323 aaPredicted RBP10.42□□□□□ -0.74
SMC4-219ENST00000487747 TTLL8A6PVC2 850 aa10.41□□□□□ -0.74
SMC4-219ENST00000487747 ESPNB1AK53 854 aa10.41□□□□□ -0.74
SMC4-219ENST00000487747 SPINT1O43278 529 aa10.41□□□□□ -0.74
SMC4-219ENST00000487747 GPR37L1O60883 481 aa10.41□□□□□ -0.74
SMC4-219ENST00000487747 PPFIA3O75145 1194 aa10.41□□□□□ -0.74
SMC4-219ENST00000487747 FBXO45P0C2W1 286 aa10.41□□□□□ -0.74
SMC4-219ENST00000487747 ADD1P35611 737 aaKnown RBP10.41□□□□□ -0.74
SMC4-219ENST00000487747 INSM1Q01101 510 aaPredicted RBP10.41□□□□□ -0.74
SMC4-219ENST00000487747 RELBQ01201 579 aa10.41□□□□□ -0.74
SMC4-219ENST00000487747 LILRA1O75019 489 aa10.4□□□□□ -0.74
SMC4-219ENST00000487747 SNRKQ9NRH2 765 aa10.4□□□□□ -0.74
SMC4-219ENST00000487747 ZBBXA8MT70 800 aa10.39□□□□□ -0.75
SMC4-219ENST00000487747 CTSOP43234 321 aaPredicted RBP10.39□□□□□ -0.75
SMC4-219ENST00000487747 KDF1Q8NAX2 398 aaPredicted RBP10.39□□□□□ -0.75
SMC4-219ENST00000487747 MTMR14Q8NCE2 650 aa10.39□□□□□ -0.75
SMC4-219ENST00000487747 INSM2Q96T92 566 aaPredicted RBP10.39□□□□□ -0.75
SMC4-219ENST00000487747 ZNF395Q9H8N7 513 aaPredicted RBP10.39□□□□□ -0.75
SMC4-219ENST00000487747 GIGYF1O75420 1035 aaPredicted RBP10.38□□□□□ -0.75
SMC4-219ENST00000487747 VSIG8P0DPA2 414 aa10.37□□□□□ -0.75
SMC4-219ENST00000487747 PTSQ03393 145 aa10.37□□□□□ -0.75
SMC4-219ENST00000487747 PCDHB9Q9Y5E1 797 aa10.37□□□□□ -0.75
SMC4-219ENST00000487747 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.36□□□□□ -0.752e-41■■■■■ 207.1
SMC4-219ENST00000487747 BANK1Q8NDB2 785 aa10.35□□□□□ -0.75
SMC4-219ENST00000487747 CYLDQ9NQC7 956 aa10.35□□□□□ -0.75
SMC4-219ENST00000487747 LOC100996750A0A140TA64 210 aa10.33□□□□□ -0.76
SMC4-219ENST00000487747 ADH1AP07327 375 aa10.33□□□□□ -0.76
SMC4-219ENST00000487747 GPR161Q8N6U8 529 aaKnown RBP10.33□□□□□ -0.76
SMC4-219ENST00000487747 KRTAP4-6Q9BYQ5 205 aa10.33□□□□□ -0.76
SMC4-219ENST00000487747 PRKCSHP14314 528 aaPredicted RBP10.32□□□□□ -0.76
SMC4-219ENST00000487747 RNF217Q8TC41 542 aa10.32□□□□□ -0.76
SMC4-219ENST00000487747 POLMQ9NP87 494 aaPredicted RBP10.32□□□□□ -0.76
SMC4-219ENST00000487747 PTGIRP43119 386 aa10.31□□□□□ -0.76
SMC4-219ENST00000487747 FOXD4L5Q5VV16 416 aaPredicted RBP10.31□□□□□ -0.76
SMC4-219ENST00000487747 CCDC155Q8N6L0 562 aa10.31□□□□□ -0.76
SMC4-219ENST00000487747 ZSCAN1Q8NBB4 408 aa10.31□□□□□ -0.76
SMC4-219ENST00000487747 NR1H3Q13133 447 aa10.3□□□□□ -0.76
SMC4-219ENST00000487747 SEPT12Q8IYM1 358 aa10.3□□□□□ -0.76
SMC4-219ENST00000487747 SLC35F4A4IF30 521 aa10.29□□□□□ -0.76
SMC4-219ENST00000487747 NDUFB9Q9Y6M9 179 aa10.29□□□□□ -0.76
SMC4-219ENST00000487747 KRT76Q01546 638 aa10.28□□□□□ -0.76
SMC4-219ENST00000487747 SENP3-EIF4A1A0A087X0R7 540 aa10.27□□□□□ -0.77
SMC4-219ENST00000487747 SOCS7O14512 581 aa10.27□□□□□ -0.77
SMC4-219ENST00000487747 SCTRP47872 440 aa10.27□□□□□ -0.77
SMC4-219ENST00000487747 TBC1D2BQ9UPU7 963 aa10.26□□□□□ -0.77
SMC4-219ENST00000487747 ERVK-9P63128 1117 aa10.24□□□□□ -0.77
SMC4-219ENST00000487747 ATP5J2-PTCD1G3V325 749 aa10.23□□□□□ -0.77
SMC4-219ENST00000487747 ITGA6P23229 1130 aa10.23□□□□□ -0.77
SMC4-219ENST00000487747 VWA5B2Q8N398 1253 aa10.23□□□□□ -0.77
SMC4-219ENST00000487747 NANOS1Q8WY41 292 aaKnown RBP10.23□□□□□ -0.77
SMC4-219ENST00000487747 RNFT1Q5M7Z0 435 aa10.22□□□□□ -0.77
SMC4-219ENST00000487747 CC2D2BQ6DHV5 1058 aa10.22□□□□□ -0.77
SMC4-219ENST00000487747 PRICKLE2Q7Z3G6 844 aa10.22□□□□□ -0.77
SMC4-219ENST00000487747 CNTNAP3BQ96NU0 1288 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms