RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 PDGFDQ9GZP0 370 aaPredicted RBP22.38■■□□□ 1.17
MCF2L-228ENST00000487354 CPSF1Q10570 1443 aaKnown RBP22.38■■□□□ 1.17
MCF2L-228ENST00000487354 PROM2Q8N271 834 aa22.37■■□□□ 1.17
MCF2L-228ENST00000487354 AXIN2Q9Y2T1 843 aa22.37■■□□□ 1.17
MCF2L-228ENST00000487354 TRPM1Q7Z4N2 1603 aa22.37■■□□□ 1.17
MCF2L-228ENST00000487354 NFAT5O94916 1531 aa22.36■■□□□ 1.17
MCF2L-228ENST00000487354 C11orf95C9JLR9 678 aaPredicted RBP22.36■■□□□ 1.17
MCF2L-228ENST00000487354 UTRNP46939 3433 aa22.36■■□□□ 1.17
MCF2L-228ENST00000487354 MARCH10Q8NA82 808 aaPredicted RBP22.35■■□□□ 1.17
MCF2L-228ENST00000487354 CABP1Q9NZU7 370 aa22.35■■□□□ 1.17
MCF2L-228ENST00000487354 WDR17Q8IZU2 1322 aa22.34■■□□□ 1.17
MCF2L-228ENST00000487354 NLRP6P59044 892 aa22.34■■□□□ 1.17
MCF2L-228ENST00000487354 DDB1Q16531 1140 aa22.34■■□□□ 1.17
MCF2L-228ENST00000487354 PPP1R1BQ9UD71 204 aaPredicted RBP22.34■■□□□ 1.17
MCF2L-228ENST00000487354 NHSQ6T4R5 1651 aa22.33■■□□□ 1.17
MCF2L-228ENST00000487354 ZBTB7CA1YPR0 619 aa22.33■■□□□ 1.17
MCF2L-228ENST00000487354 BCL11BQ9C0K0 894 aaPredicted RBP22.33■■□□□ 1.17
MCF2L-228ENST00000487354 PAPPAQ13219 1627 aa22.32■■□□□ 1.16
MCF2L-228ENST00000487354 MON2Q7Z3U7 1717 aa22.32■■□□□ 1.16
MCF2L-228ENST00000487354 USP54Q70EL1 1684 aa22.32■■□□□ 1.16
MCF2L-228ENST00000487354 TOM1L2Q6ZVM7 507 aa22.31■■□□□ 1.16
MCF2L-228ENST00000487354 PTGER2P43116 358 aa22.3■■□□□ 1.16
MCF2L-228ENST00000487354 ARHGEF25Q86VW2 580 aa22.3■■□□□ 1.16
MCF2L-228ENST00000487354 ABCC6O95255 1503 aa22.3■■□□□ 1.16
MCF2L-228ENST00000487354 TNS2Q63HR2 1409 aa22.27■■□□□ 1.16
MCF2L-228ENST00000487354 LTN1O94822 1766 aa22.26■■□□□ 1.15
MCF2L-228ENST00000487354 ZBTB7AO95365 584 aa22.26■■□□□ 1.15
MCF2L-228ENST00000487354 TTC21BQ7Z4L5 1316 aa22.26■■□□□ 1.15
MCF2L-228ENST00000487354 BTAF1O14981 1849 aa22.25■■□□□ 1.15
MCF2L-228ENST00000487354 CARD10Q9BWT7 1032 aa22.25■■□□□ 1.15
MCF2L-228ENST00000487354 CHD4Q14839 1912 aa22.25■■□□□ 1.15
MCF2L-228ENST00000487354 CDCA7Q9BWT1 371 aaPredicted RBP22.24■■□□□ 1.15
MCF2L-228ENST00000487354 TXNRD1Q16881 649 aa22.23■■□□□ 1.15
MCF2L-228ENST00000487354 SGIP1Q9BQI5 828 aa22.23■■□□□ 1.15
MCF2L-228ENST00000487354 EVC2Q86UK5 1308 aa22.22■■□□□ 1.15
MCF2L-228ENST00000487354 SLC15A2Q16348 729 aa22.2■■□□□ 1.14
MCF2L-228ENST00000487354 ATF5Q9Y2D1 282 aaPredicted RBP22.2■■□□□ 1.14
MCF2L-228ENST00000487354 TTC21AQ8NDW8 1320 aa22.2■■□□□ 1.14
MCF2L-228ENST00000487354 CCDC7Q96M83 1385 aa22.2■■□□□ 1.14
MCF2L-228ENST00000487354 COL24A1Q17RW2 1714 aa22.2■■□□□ 1.14
MCF2L-228ENST00000487354 SOX12O15370 315 aa22.19■■□□□ 1.14
MCF2L-228ENST00000487354 KCNH5Q8NCM2 988 aa22.19■■□□□ 1.14
MCF2L-228ENST00000487354 L3MBTL2Q969R5 705 aa22.19■■□□□ 1.14
MCF2L-228ENST00000487354 CD163L1Q9NR16 1453 aa22.19■■□□□ 1.14
MCF2L-228ENST00000487354 QSER1Q2KHR3 1735 aa22.18■■□□□ 1.14
MCF2L-228ENST00000487354 TUBGCP6Q96RT7 1819 aa22.17■■□□□ 1.14
MCF2L-228ENST00000487354 STK32BQ9NY57 414 aa22.17■■□□□ 1.14
MCF2L-228ENST00000487354 DCAF8L1A6NGE4 600 aa22.16■■□□□ 1.14
MCF2L-228ENST00000487354 SYT17Q9BSW7 474 aa22.16■■□□□ 1.14
MCF2L-228ENST00000487354 ZNF692Q9BU19 519 aaPredicted RBP22.16■■□□□ 1.14
MCF2L-228ENST00000487354 FHDC1Q9C0D6 1143 aaPredicted RBP22.16■■□□□ 1.14
MCF2L-228ENST00000487354 USP31Q70CQ4 1352 aa22.15■■□□□ 1.14
MCF2L-228ENST00000487354 CSB-PGBD3P0DP91 1061 aa22.15■■□□□ 1.14
MCF2L-228ENST00000487354 ZNF784Q8NCA9 323 aaPredicted RBP22.15■■□□□ 1.14
MCF2L-228ENST00000487354 KTN1Q86UP2 1357 aaKnown RBP22.14■■□□□ 1.14
MCF2L-228ENST00000487354 ERBB3P21860 1342 aa22.14■■□□□ 1.14
MCF2L-228ENST00000487354 EXOC5O00471 708 aa22.14■■□□□ 1.13
MCF2L-228ENST00000487354 MTFR1LQ9H019 292 aa22.14■■□□□ 1.13
MCF2L-228ENST00000487354 SBNO2Q9Y2G9 1366 aa22.12■■□□□ 1.13
MCF2L-228ENST00000487354 ROCK2O75116 1388 aaKnown RBP22.12■■□□□ 1.13
MCF2L-228ENST00000487354 MAP3K5Q99683 1374 aa22.12■■□□□ 1.13
MCF2L-228ENST00000487354 SHANK3Q9BYB0 1731 aa22.11■■□□□ 1.13
MCF2L-228ENST00000487354 ACSBG1Q96GR2 724 aa22.11■■□□□ 1.13
MCF2L-228ENST00000487354 KAT6BQ8WYB5 2073 aa22.1■■□□□ 1.13
MCF2L-228ENST00000487354 ZNF827Q17R98 1081 aa22.1■■□□□ 1.13
MCF2L-228ENST00000487354 FAM208AQ9UK61 1670 aaKnown RBP22.09■■□□□ 1.13
MCF2L-228ENST00000487354 GOLGB1Q14789 3259 aaKnown RBP22.08■■□□□ 1.13
MCF2L-228ENST00000487354 SIN3AQ96ST3 1273 aa22.08■■□□□ 1.13
MCF2L-228ENST00000487354 LY75O60449 1722 aa22.08■■□□□ 1.12
MCF2L-228ENST00000487354 DOT1LQ8TEK3 1739 aa22.07■■□□□ 1.12
MCF2L-228ENST00000487354 NME9Q86XW9 330 aa22.07■■□□□ 1.12
MCF2L-228ENST00000487354 LRRC4BQ9NT99 713 aa22.07■■□□□ 1.12
MCF2L-228ENST00000487354 RGPD2P0DJD1 1756 aa22.06■■□□□ 1.12
MCF2L-228ENST00000487354 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.05■■□□□ 1.12
MCF2L-228ENST00000487354 IL2RBP14784 551 aa22.04■■□□□ 1.12
MCF2L-228ENST00000487354 ARXQ96QS3 562 aa22.04■■□□□ 1.12
MCF2L-228ENST00000487354 NLRP2Q9NX02 1062 aa22.04■■□□□ 1.12
MCF2L-228ENST00000487354 ANKRD24Q8TF21 1146 aa22.02■■□□□ 1.12
MCF2L-228ENST00000487354 AKT1S1Q96B36 256 aa22.02■■□□□ 1.12
MCF2L-228ENST00000487354 EDC4Q6P2E9 1401 aaKnown RBP22.01■■□□□ 1.11
MCF2L-228ENST00000487354 A0A1W2PP64 1363 aa21.99■■□□□ 1.11
MCF2L-228ENST00000487354 NSD2O96028 1365 aa21.99■■□□□ 1.11
MCF2L-228ENST00000487354 PNPLA7Q6ZV29 1317 aa21.98■■□□□ 1.11
MCF2L-228ENST00000487354 SLC12A5Q9H2X9 1139 aa21.96■■□□□ 1.11
MCF2L-228ENST00000487354 C1QTNF8P60827 252 aa21.95■■□□□ 1.1
MCF2L-228ENST00000487354 MEGF6O75095 1541 aa21.93■■□□□ 1.1
MCF2L-228ENST00000487354 NEUROD1Q13562 356 aa21.93■■□□□ 1.1
MCF2L-228ENST00000487354 ANKRD36BQ8N2N9 1353 aa21.92■■□□□ 1.1
MCF2L-228ENST00000487354 KCNQ4P56696 695 aa21.92■■□□□ 1.1
MCF2L-228ENST00000487354 SLC27A3Q5K4L6 730 aa21.92■■□□□ 1.1
MCF2L-228ENST00000487354 IP6K1Q92551 441 aa21.92■■□□□ 1.1
MCF2L-228ENST00000487354 SENP3-EIF4A1A0A087X0R7 540 aa21.91■■□□□ 1.1
MCF2L-228ENST00000487354 SLC16A10Q8TF71 515 aa21.91■■□□□ 1.1
MCF2L-228ENST00000487354 C5P01031 1676 aa21.91■■□□□ 1.1
MCF2L-228ENST00000487354 TAF1LQ8IZX4 1826 aa21.9■■□□□ 1.1
MCF2L-228ENST00000487354 HDGFL2Q7Z4V5 671 aaPredicted RBP21.9■■□□□ 1.1
MCF2L-228ENST00000487354 NLGN2Q8NFZ4 835 aa21.9■■□□□ 1.1
MCF2L-228ENST00000487354 TMC1Q8TDI8 760 aa21.9■■□□□ 1.1
MCF2L-228ENST00000487354 DDX54Q8TDD1 881 aaKnown RBP21.89■■□□□ 1.09
MCF2L-228ENST00000487354 GPR162Q16538 588 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms