RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SEPT12Q8IYM1 358 aa20.39■□□□□ 0.85
USP4-212ENST00000486549 COL5A2P05997 1499 aaPredicted RBP20.38■□□□□ 0.85
USP4-212ENST00000486549 FYB1O15117 783 aa20.38■□□□□ 0.85
USP4-212ENST00000486549 SPATA31A5Q5VU36 1347 aa20.37■□□□□ 0.85
USP4-212ENST00000486549 SPATA31A7Q8IWB4 1347 aa20.37■□□□□ 0.85
USP4-212ENST00000486549 A0A0G2JS52 829 aa20.37■□□□□ 0.85
USP4-212ENST00000486549 MYT1Q01538 1121 aa20.37■□□□□ 0.85
USP4-212ENST00000486549 PANK3Q9H999 370 aa20.37■□□□□ 0.85
USP4-212ENST00000486549 LARP1Q6PKG0 1096 aaKnown RBP20.36■□□□□ 0.85
USP4-212ENST00000486549 USP35Q9P2H5 1018 aa20.36■□□□□ 0.85
USP4-212ENST00000486549 BRWD3Q6RI45 1802 aa20.35■□□□□ 0.85
USP4-212ENST00000486549 FAM98CQ17RN3 349 aaKnown RBP20.35■□□□□ 0.85
USP4-212ENST00000486549 KRT27Q7Z3Y8 459 aa20.35■□□□□ 0.85
USP4-212ENST00000486549 AXIN2Q9Y2T1 843 aa20.35■□□□□ 0.85
USP4-212ENST00000486549 SPATA31A1Q5TZJ5 1347 aa20.34■□□□□ 0.85
USP4-212ENST00000486549 ABCC6O95255 1503 aa20.34■□□□□ 0.85
USP4-212ENST00000486549 SF3B2Q13435 895 aaKnown RBP20.34■□□□□ 0.85
USP4-212ENST00000486549 CGNL1Q0VF96 1302 aa20.33■□□□□ 0.85
USP4-212ENST00000486549 FBLN1P23142 703 aa20.33■□□□□ 0.85
USP4-212ENST00000486549 CCDC7Q96M83 1385 aa20.33■□□□□ 0.84
USP4-212ENST00000486549 ANKRD26Q9UPS8 1709 aa20.32■□□□□ 0.84
USP4-212ENST00000486549 BLMP54132 1417 aaPredicted RBP20.31■□□□□ 0.84
USP4-212ENST00000486549 CRB1P82279 1406 aa20.31■□□□□ 0.84
USP4-212ENST00000486549 CSB-PGBD3P0DP91 1061 aa20.31■□□□□ 0.84
USP4-212ENST00000486549 THSD7AQ9UPZ6 1657 aa20.3■□□□□ 0.84
USP4-212ENST00000486549 TOM1L2Q6ZVM7 507 aa20.3■□□□□ 0.84
USP4-212ENST00000486549 MAP3K19Q56UN5 1328 aa20.29■□□□□ 0.84
USP4-212ENST00000486549 WASHC2AQ641Q2 1341 aa20.29■□□□□ 0.84
USP4-212ENST00000486549 RRS1Q15050 365 aaKnown RBP20.29■□□□□ 0.84
USP4-212ENST00000486549 WDR17Q8IZU2 1322 aa20.28■□□□□ 0.84
USP4-212ENST00000486549 TCP11L2Q8N4U5 519 aa20.28■□□□□ 0.84
USP4-212ENST00000486549 AMPHP49418 695 aa20.27■□□□□ 0.84
USP4-212ENST00000486549 WNK3Q9BYP7 1800 aa20.27■□□□□ 0.84
USP4-212ENST00000486549 KNSTRNQ9Y448 316 aa20.26■□□□□ 0.83
USP4-212ENST00000486549 EP400Q96L91 3159 aa20.25■□□□□ 0.83
USP4-212ENST00000486549 BARGINQ6ZT62 677 aa20.25■□□□□ 0.83
USP4-212ENST00000486549 ANKRD24Q8TF21 1146 aa20.25■□□□□ 0.83
USP4-212ENST00000486549 IP6K1Q92551 441 aa20.25■□□□□ 0.83
USP4-212ENST00000486549 LTV1Q96GA3 475 aaPredicted RBP20.25■□□□□ 0.83
USP4-212ENST00000486549 THRAP3Q9Y2W1 955 aaKnown RBP20.25■□□□□ 0.83
USP4-212ENST00000486549 ERBB3P21860 1342 aa20.25■□□□□ 0.83
USP4-212ENST00000486549 PEAK1Q9H792 1746 aa20.24■□□□□ 0.83
USP4-212ENST00000486549 HOXC9P31274 260 aa20.24■□□□□ 0.83
USP4-212ENST00000486549 MAP2P11137 1827 aaKnown RBP20.24■□□□□ 0.83
USP4-212ENST00000486549 RTL1A6NKG5 1358 aa20.23■□□□□ 0.83
USP4-212ENST00000486549 TNNT2P45379 298 aaPredicted RBP20.23■□□□□ 0.83
USP4-212ENST00000486549 NLRP2Q9NX02 1062 aa20.23■□□□□ 0.83
USP4-212ENST00000486549 FAM208AQ9UK61 1670 aaKnown RBP20.22■□□□□ 0.83
USP4-212ENST00000486549 NSD2O96028 1365 aa20.22■□□□□ 0.83
USP4-212ENST00000486549 PARP4Q9UKK3 1724 aaKnown RBP20.22■□□□□ 0.83
USP4-212ENST00000486549 ZEB1P37275 1124 aaPredicted RBP20.21■□□□□ 0.83
USP4-212ENST00000486549 CARD10Q9BWT7 1032 aa20.21■□□□□ 0.83
USP4-212ENST00000486549 EMILIN1Q9Y6C2 1016 aa20.21■□□□□ 0.83
USP4-212ENST00000486549 RGPD2P0DJD1 1756 aa20.21■□□□□ 0.83
USP4-212ENST00000486549 PPM1GO15355 546 aaPredicted RBP20.2■□□□□ 0.82
USP4-212ENST00000486549 BAG6P46379 1132 aa20.2■□□□□ 0.82
USP4-212ENST00000486549 LRRC37A3O60309 1634 aa20.2■□□□□ 0.82
USP4-212ENST00000486549 FLT4P35916 1363 aa20.2■□□□□ 0.82
USP4-212ENST00000486549 PDE3BQ13370 1112 aa20.19■□□□□ 0.82
USP4-212ENST00000486549 FAM182BQ5T319 152 aa20.19■□□□□ 0.82
USP4-212ENST00000486549 FAM196AQ6ZSG2 479 aa20.19■□□□□ 0.82
USP4-212ENST00000486549 MORC1Q86VD1 984 aa20.19■□□□□ 0.82
USP4-212ENST00000486549 CNGB1Q14028 1251 aaPredicted RBP20.17■□□□□ 0.82
USP4-212ENST00000486549 HSP90AB2PQ58FF8 381 aa20.17■□□□□ 0.82
USP4-212ENST00000486549 AMER1Q5JTC6 1135 aaPredicted RBP20.17■□□□□ 0.82
USP4-212ENST00000486549 SMG6Q86US8 1419 aaKnown RBP20.17■□□□□ 0.82
USP4-212ENST00000486549 KIF24Q5T7B8 1368 aa20.16■□□□□ 0.82
USP4-212ENST00000486549 PER1O15534 1290 aaPredicted RBP20.15■□□□□ 0.82
USP4-212ENST00000486549 CC2D1BQ5T0F9 858 aaKnown RBP20.15■□□□□ 0.82
USP4-212ENST00000486549 INSRP06213 1382 aa20.15■□□□□ 0.82
USP4-212ENST00000486549 DISP2A7MBM2 1401 aa20.15■□□□□ 0.82
USP4-212ENST00000486549 DDB1Q16531 1140 aa20.14■□□□□ 0.81
USP4-212ENST00000486549 CDCA7Q9BWT1 371 aaPredicted RBP20.14■□□□□ 0.81
USP4-212ENST00000486549 POLKQ9UBT6 870 aa20.14■□□□□ 0.81
USP4-212ENST00000486549 DEFB132Q7Z7B7 95 aa20.13■□□□□ 0.81
USP4-212ENST00000486549 IL2RBP14784 551 aa20.11■□□□□ 0.81
USP4-212ENST00000486549 USHBP1Q8N6Y0 703 aa20.11■□□□□ 0.81
USP4-212ENST00000486549 NBPF6Q5VWK0 638 aa20.1■□□□□ 0.81
USP4-212ENST00000486549 NBPF4Q96M43 638 aa20.1■□□□□ 0.81
USP4-212ENST00000486549 RGPD1P0DJD0 1748 aa20.09■□□□□ 0.81
USP4-212ENST00000486549 TNS2Q63HR2 1409 aa20.09■□□□□ 0.81
USP4-212ENST00000486549 EXOC5O00471 708 aa20.08■□□□□ 0.81
USP4-212ENST00000486549 OVOS2A0A0G2JMS6 1433 aa20.07■□□□□ 0.8
USP4-212ENST00000486549 PARD3Q8TEW0 1356 aa20.07■□□□□ 0.8
USP4-212ENST00000486549 NPC1L1Q9UHC9 1359 aa20.07■□□□□ 0.8
USP4-212ENST00000486549 TRIM37O94972 964 aa20.06■□□□□ 0.8
USP4-212ENST00000486549 MEGF6O75095 1541 aa20.06■□□□□ 0.8
USP4-212ENST00000486549 TNS1Q9HBL0 1735 aaKnown RBP20.05■□□□□ 0.8
USP4-212ENST00000486549 MARCH10Q8NA82 808 aaPredicted RBP20.05■□□□□ 0.8
USP4-212ENST00000486549 EN1Q05925 392 aaPredicted RBP20.04■□□□□ 0.8
USP4-212ENST00000486549 EIF4A2Q14240 407 aaKnown RBP20.04■□□□□ 0.8
USP4-212ENST00000486549 APBA3O96018 575 aa20.03■□□□□ 0.8
USP4-212ENST00000486549 SBF2Q86WG5 1849 aa20.03■□□□□ 0.8
USP4-212ENST00000486549 RAPGEF4Q8WZA2 1011 aa20.02■□□□□ 0.8
USP4-212ENST00000486549 SHANK3Q9BYB0 1731 aa20.02■□□□□ 0.79
USP4-212ENST00000486549 MTHFSP49914 203 aa20.01■□□□□ 0.79
USP4-212ENST00000486549 EYA1Q99502 592 aa20.01■□□□□ 0.79
USP4-212ENST00000486549 TATP17735 454 aaPredicted RBP20■□□□□ 0.79
USP4-212ENST00000486549 DDX10Q13206 875 aaKnown RBP20■□□□□ 0.79
USP4-212ENST00000486549 DDX54Q8TDD1 881 aaKnown RBP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms