RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 EVA1CP58658 441 aa16.24■□□□□ 0.19
HPS4-214ENST00000485842 VPS72Q15906 364 aa16.24■□□□□ 0.19
HPS4-214ENST00000485842 ABCC6O95255 1503 aa16.24■□□□□ 0.19
HPS4-214ENST00000485842 COL5A2P05997 1499 aaPredicted RBP16.23■□□□□ 0.19
HPS4-214ENST00000485842 GJD4Q96KN9 370 aaPredicted RBP16.23■□□□□ 0.19
HPS4-214ENST00000485842 NSD2O96028 1365 aa16.23■□□□□ 0.19
HPS4-214ENST00000485842 MAP3K19Q56UN5 1328 aa16.22■□□□□ 0.19
HPS4-214ENST00000485842 RRS1Q15050 365 aaKnown RBP16.22■□□□□ 0.19
HPS4-214ENST00000485842 TNNT2P45379 298 aaPredicted RBP16.21■□□□□ 0.19
HPS4-214ENST00000485842 AXIN2Q9Y2T1 843 aa16.21■□□□□ 0.19
HPS4-214ENST00000485842 RGS12O14924 1447 aa16.2■□□□□ 0.18
HPS4-214ENST00000485842 AMPHP49418 695 aa16.2■□□□□ 0.18
HPS4-214ENST00000485842 CNGB1Q14028 1251 aaPredicted RBP16.2■□□□□ 0.18
HPS4-214ENST00000485842 LARP1Q6PKG0 1096 aaKnown RBP16.2■□□□□ 0.18
HPS4-214ENST00000485842 SPATA31A5Q5VU36 1347 aa16.19■□□□□ 0.18
HPS4-214ENST00000485842 SPATA31A7Q8IWB4 1347 aa16.19■□□□□ 0.18
HPS4-214ENST00000485842 CDK12Q9NYV4 1490 aaPredicted RBP16.19■□□□□ 0.18
HPS4-214ENST00000485842 CSB-PGBD3P0DP91 1061 aa16.19■□□□□ 0.18
HPS4-214ENST00000485842 AMER1Q5JTC6 1135 aaPredicted RBP16.19■□□□□ 0.18
HPS4-214ENST00000485842 MORC1Q86VD1 984 aa16.19■□□□□ 0.18
HPS4-214ENST00000485842 USP35Q9P2H5 1018 aa16.19■□□□□ 0.18
HPS4-214ENST00000485842 PEAK1Q9H792 1746 aa16.19■□□□□ 0.18
HPS4-214ENST00000485842 RTL1A6NKG5 1358 aa16.18■□□□□ 0.18
HPS4-214ENST00000485842 MAP2P11137 1827 aaKnown RBP16.18■□□□□ 0.18
HPS4-214ENST00000485842 A0A0G2JS52 829 aa16.18■□□□□ 0.18
HPS4-214ENST00000485842 PER1O15534 1290 aaPredicted RBP16.18■□□□□ 0.18
HPS4-214ENST00000485842 MYT1Q01538 1121 aa16.18■□□□□ 0.18
HPS4-214ENST00000485842 CC2D1BQ5T0F9 858 aaKnown RBP16.18■□□□□ 0.18
HPS4-214ENST00000485842 BLMP54132 1417 aaPredicted RBP16.18■□□□□ 0.18
HPS4-214ENST00000485842 CRB1P82279 1406 aa16.18■□□□□ 0.18
HPS4-214ENST00000485842 SPATA31A1Q5TZJ5 1347 aa16.18■□□□□ 0.18
HPS4-214ENST00000485842 HOXC9P31274 260 aa16.17■□□□□ 0.18
HPS4-214ENST00000485842 TOM1L2Q6ZVM7 507 aa16.17■□□□□ 0.18
HPS4-214ENST00000485842 IP6K1Q92551 441 aa16.17■□□□□ 0.18
HPS4-214ENST00000485842 EMILIN1Q9Y6C2 1016 aa16.17■□□□□ 0.18
HPS4-214ENST00000485842 WDR17Q8IZU2 1322 aa16.17■□□□□ 0.18
HPS4-214ENST00000485842 PPM1GO15355 546 aaPredicted RBP16.16■□□□□ 0.18
HPS4-214ENST00000485842 FAM98CQ17RN3 349 aaKnown RBP16.16■□□□□ 0.18
HPS4-214ENST00000485842 ANKRD24Q8TF21 1146 aa16.16■□□□□ 0.18
HPS4-214ENST00000485842 LTV1Q96GA3 475 aaPredicted RBP16.16■□□□□ 0.18
HPS4-214ENST00000485842 FLT4P35916 1363 aa16.15■□□□□ 0.18
HPS4-214ENST00000485842 ERBB3P21860 1342 aa16.15■□□□□ 0.18
HPS4-214ENST00000485842 FAM208AQ9UK61 1670 aaKnown RBP16.14■□□□□ 0.17
HPS4-214ENST00000485842 BRWD3Q6RI45 1802 aa16.13■□□□□ 0.17
HPS4-214ENST00000485842 WNK3Q9BYP7 1800 aa16.13■□□□□ 0.17
HPS4-214ENST00000485842 DDX10Q13206 875 aaKnown RBP16.13■□□□□ 0.17
HPS4-214ENST00000485842 SEPT12Q8IYM1 358 aa16.13■□□□□ 0.17
HPS4-214ENST00000485842 TCP11L2Q8N4U5 519 aa16.13■□□□□ 0.17
HPS4-214ENST00000485842 NLRP2Q9NX02 1062 aa16.13■□□□□ 0.17
HPS4-214ENST00000485842 POLKQ9UBT6 870 aa16.13■□□□□ 0.17
HPS4-214ENST00000485842 THSD7AQ9UPZ6 1657 aa16.13■□□□□ 0.17
HPS4-214ENST00000485842 RGPD2P0DJD1 1756 aa16.13■□□□□ 0.17
HPS4-214ENST00000485842 KIF24Q5T7B8 1368 aa16.13■□□□□ 0.17
HPS4-214ENST00000485842 NPC1L1Q9UHC9 1359 aa16.13■□□□□ 0.17
HPS4-214ENST00000485842 SMG6Q86US8 1419 aaKnown RBP16.12■□□□□ 0.17
HPS4-214ENST00000485842 HSP90AB2PQ58FF8 381 aa16.12■□□□□ 0.17
HPS4-214ENST00000485842 INSRP06213 1382 aa16.11■□□□□ 0.17
HPS4-214ENST00000485842 ZNF316A6NFI3 1004 aaPredicted RBP16.1■□□□□ 0.17
HPS4-214ENST00000485842 CARD10Q9BWT7 1032 aa16.1■□□□□ 0.17
HPS4-214ENST00000485842 ONECUT3O60422 494 aaPredicted RBP16.09■□□□□ 0.17
HPS4-214ENST00000485842 BARGINQ6ZT62 677 aa16.09■□□□□ 0.17
HPS4-214ENST00000485842 THRAP3Q9Y2W1 955 aaKnown RBP16.09■□□□□ 0.17
HPS4-214ENST00000485842 PARP4Q9UKK3 1724 aaKnown RBP16.08■□□□□ 0.17
HPS4-214ENST00000485842 LRRC37A3O60309 1634 aa16.08■□□□□ 0.16
HPS4-214ENST00000485842 USHBP1Q8N6Y0 703 aa16.06■□□□□ 0.16
HPS4-214ENST00000485842 DISP2A7MBM2 1401 aa16.05■□□□□ 0.16
HPS4-214ENST00000485842 KRT27Q7Z3Y8 459 aa16.05■□□□□ 0.16
HPS4-214ENST00000485842 MTHFSP49914 203 aa16.04■□□□□ 0.16
HPS4-214ENST00000485842 NBPF6Q5VWK0 638 aa16.04■□□□□ 0.16
HPS4-214ENST00000485842 NBPF4Q96M43 638 aa16.04■□□□□ 0.16
HPS4-214ENST00000485842 SOCS7O14512 581 aa16.03■□□□□ 0.16
HPS4-214ENST00000485842 IL2RBP14784 551 aa16.03■□□□□ 0.16
HPS4-214ENST00000485842 EIF4A2Q14240 407 aaKnown RBP16.03■□□□□ 0.16
HPS4-214ENST00000485842 CDCA7Q9BWT1 371 aaPredicted RBP16.03■□□□□ 0.16
HPS4-214ENST00000485842 PDE3BQ13370 1112 aa16.02■□□□□ 0.16
HPS4-214ENST00000485842 DDB1Q16531 1140 aa16.02■□□□□ 0.16
HPS4-214ENST00000485842 FAM182BQ5T319 152 aa16.02■□□□□ 0.16
HPS4-214ENST00000485842 TNS2Q63HR2 1409 aa16.01■□□□□ 0.15
HPS4-214ENST00000485842 PARD3Q8TEW0 1356 aa16■□□□□ 0.15
HPS4-214ENST00000485842 MEGF6O75095 1541 aa16■□□□□ 0.15
HPS4-214ENST00000485842 PPP2R1AP30153 589 aa16■□□□□ 0.15
HPS4-214ENST00000485842 EYA1Q99502 592 aa16■□□□□ 0.15
HPS4-214ENST00000485842 EXOC5O00471 708 aa15.98■□□□□ 0.15
HPS4-214ENST00000485842 NCAPD2Q15021 1401 aa15.98■□□□□ 0.15
HPS4-214ENST00000485842 RAPGEF4Q8WZA2 1011 aa15.98■□□□□ 0.15
HPS4-214ENST00000485842 COL3A1P02461 1466 aaPredicted RBP15.97■□□□□ 0.15
HPS4-214ENST00000485842 RGPD1P0DJD0 1748 aa15.97■□□□□ 0.15
HPS4-214ENST00000485842 OVOS2A0A0G2JMS6 1433 aa15.97■□□□□ 0.15
HPS4-214ENST00000485842 TATP17735 454 aaPredicted RBP15.97■□□□□ 0.15
HPS4-214ENST00000485842 IGSF1Q8N6C5 1336 aa15.96■□□□□ 0.15
HPS4-214ENST00000485842 UPF1Q92900 1129 aaKnown RBP eCLIP15.96■□□□□ 0.15
HPS4-214ENST00000485842 CFAP53Q96M91 514 aa15.96■□□□□ 0.15
HPS4-214ENST00000485842 SHANK3Q9BYB0 1731 aa15.95■□□□□ 0.14
HPS4-214ENST00000485842 DIAPH1O60610 1272 aaKnown RBP15.95■□□□□ 0.14
HPS4-214ENST00000485842 IL13P35225 146 aa15.95■□□□□ 0.14
HPS4-214ENST00000485842 RALBP1Q15311 655 aa15.95■□□□□ 0.14
HPS4-214ENST00000485842 MARCH10Q8NA82 808 aaPredicted RBP15.95■□□□□ 0.14
HPS4-214ENST00000485842 FAM196AQ6ZSG2 479 aa15.94■□□□□ 0.14
HPS4-214ENST00000485842 PKD1L3Q7Z443 1732 aa15.94■□□□□ 0.14
HPS4-214ENST00000485842 U2SURPO15042 1029 aaKnown RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms