RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 MRPL14Q6P1L8 145 aaKnown RBP8.1□□□□□ -1.11
VPS50-217ENST00000485140 SLC16A10Q8TF71 515 aa8.1□□□□□ -1.11
VPS50-217ENST00000485140 DACH1Q9UI36 760 aa8.1□□□□□ -1.11
VPS50-217ENST00000485140 ZIC2O95409 532 aaPredicted RBP8.09□□□□□ -1.11
VPS50-217ENST00000485140 TREML4Q6UXN2 200 aa8.09□□□□□ -1.11
VPS50-217ENST00000485140 SEPT12Q8IYM1 358 aa8.09□□□□□ -1.11
VPS50-217ENST00000485140 KLF16Q9BXK1 252 aaPredicted RBP8.09□□□□□ -1.11
VPS50-217ENST00000485140 CARD14Q9BXL6 1004 aa8.09□□□□□ -1.11
VPS50-217ENST00000485140 TSEN34Q9BSV6 310 aaKnown RBP8.08□□□□□ -1.12
VPS50-217ENST00000485140 KCTD15Q96SI1 283 aaPredicted RBP8.07□□□□□ -1.12
VPS50-217ENST00000485140 WFS1O76024 890 aa8.06□□□□□ -1.12
VPS50-217ENST00000485140 TRIM46Q7Z4K8 759 aa8.06□□□□□ -1.12
VPS50-217ENST00000485140 DZIP3Q86Y13 1208 aaKnown RBP8.06□□□□□ -1.12
VPS50-217ENST00000485140 MEIOBQ8N635 442 aa8.06□□□□□ -1.12
VPS50-217ENST00000485140 ADAM32Q8TC27 787 aa8.05□□□□□ -1.12
VPS50-217ENST00000485140 ZBBXA8MT70 800 aa8.04□□□□□ -1.12
VPS50-217ENST00000485140 TERTO14746 1132 aaKnown RBP8.04□□□□□ -1.12
VPS50-217ENST00000485140 SNRPBP14678 240 aaKnown RBP8.04□□□□□ -1.12
VPS50-217ENST00000485140 RNF20Q5VTR2 975 aa8.04□□□□□ -1.12
VPS50-217ENST00000485140 ITPKCQ96DU7 683 aa8.04□□□□□ -1.12
VPS50-217ENST00000485140 ZFP42Q96MM3 310 aa8.04□□□□□ -1.12
VPS50-217ENST00000485140 NR3C2P08235 984 aa8.03□□□□□ -1.12
VPS50-217ENST00000485140 BMP1P13497 986 aa8.03□□□□□ -1.12
VPS50-217ENST00000485140 LINC00528Q8N1L1 170 aa8.03□□□□□ -1.12
VPS50-217ENST00000485140 NXF1Q9UBU9 619 aaKnown RBP8.03□□□□□ -1.12
VPS50-217ENST00000485140 NDUFB9Q9Y6M9 179 aa8.03□□□□□ -1.12
VPS50-217ENST00000485140 BMP2P12643 396 aa8.02□□□□□ -1.13
VPS50-217ENST00000485140 PPP1R26Q5T8A7 1209 aaPredicted RBP8.02□□□□□ -1.13
VPS50-217ENST00000485140 MAN1A2O60476 641 aa8.01□□□□□ -1.13
VPS50-217ENST00000485140 INSM1Q01101 510 aaPredicted RBP8.01□□□□□ -1.13
VPS50-217ENST00000485140 IRF7Q92985 503 aa8.01□□□□□ -1.13
VPS50-217ENST00000485140 ZFAND3Q9H8U3 227 aa8.01□□□□□ -1.13
VPS50-217ENST00000485140 HMX1Q9NP08 348 aaPredicted RBP8.01□□□□□ -1.13
VPS50-217ENST00000485140 FBXO31Q5XUX0 539 aaPredicted RBP8□□□□□ -1.13
VPS50-217ENST00000485140 Q6ZVU0 165 aa8□□□□□ -1.13
VPS50-217ENST00000485140 PURBQ96QR8 312 aaKnown RBP8□□□□□ -1.13
VPS50-217ENST00000485140 TRIM34Q9BYJ4 488 aa8□□□□□ -1.13
VPS50-217ENST00000485140 LOC100996750A0A140TA64 210 aa7.99□□□□□ -1.13
VPS50-217ENST00000485140 ESPNB1AK53 854 aa7.99□□□□□ -1.13
VPS50-217ENST00000485140 WIPF1O43516 503 aa7.99□□□□□ -1.13
VPS50-217ENST00000485140 NR1H3Q13133 447 aa7.99□□□□□ -1.13
VPS50-217ENST00000485140 INTS6LQ5JSJ4 861 aaKnown RBP7.99□□□□□ -1.13
VPS50-217ENST00000485140 KRTAP4-6Q9BYQ5 205 aa7.99□□□□□ -1.13
VPS50-217ENST00000485140 NFX1Q12986 1120 aaKnown RBP7.98□□□□□ -1.13
VPS50-217ENST00000485140 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.98□□□□□ -1.13
VPS50-217ENST00000485140 GJD4Q96KN9 370 aaPredicted RBP7.98□□□□□ -1.13
VPS50-217ENST00000485140 EPS8L1Q8TE68 723 aa7.97□□□□□ -1.13
VPS50-217ENST00000485140 FAM181BA6NEQ2 426 aa7.96□□□□□ -1.14
VPS50-217ENST00000485140 SPINT1O43278 529 aa7.96□□□□□ -1.14
VPS50-217ENST00000485140 C6orf118Q5T5N4 469 aa7.96□□□□□ -1.14
VPS50-217ENST00000485140 OCSTAMPQ9BR26 566 aa7.96□□□□□ -1.14
VPS50-217ENST00000485140 ESF1Q9H501 851 aaKnown RBP7.96□□□□□ -1.14
VPS50-217ENST00000485140 PCDHB9Q9Y5E1 797 aa7.96□□□□□ -1.14
VPS50-217ENST00000485140 TTLL8A6PVC2 850 aa7.95□□□□□ -1.14
VPS50-217ENST00000485140 H3BM21 787 aa7.95□□□□□ -1.14
VPS50-217ENST00000485140 SOS2Q07890 1332 aaPredicted RBP7.95□□□□□ -1.14
VPS50-217ENST00000485140 FBXO45P0C2W1 286 aa7.94□□□□□ -1.14
VPS50-217ENST00000485140 LCE2CQ5TA81 110 aa7.94□□□□□ -1.14
VPS50-217ENST00000485140 ADH1AP07327 375 aa7.93□□□□□ -1.14
VPS50-217ENST00000485140 EIF4G2P78344 907 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS50-217ENST00000485140 WWC1Q8IX03 1113 aa7.93□□□□□ -1.14
VPS50-217ENST00000485140 MTMR14Q8NCE2 650 aa7.93□□□□□ -1.14
VPS50-217ENST00000485140 STK17AQ9UEE5 414 aa7.93□□□□□ -1.14
VPS50-217ENST00000485140 VSIG8P0DPA2 414 aa7.92□□□□□ -1.14
VPS50-217ENST00000485140 ERVH48-1M5A8F1 160 aa7.91□□□□□ -1.14
VPS50-217ENST00000485140 GPC1P35052 558 aa7.91□□□□□ -1.14
VPS50-217ENST00000485140 WASHC4Q2M389 1173 aa7.91□□□□□ -1.14
VPS50-217ENST00000485140 SOX11P35716 441 aa7.9□□□□□ -1.14
VPS50-217ENST00000485140 CYP2U1Q7Z449 544 aa7.9□□□□□ -1.14
VPS50-217ENST00000485140 ZNF784Q8NCA9 323 aaPredicted RBP7.9□□□□□ -1.14
VPS50-217ENST00000485140 PTGIRP43119 386 aa7.89□□□□□ -1.15
VPS50-217ENST00000485140 CC2D2BQ6DHV5 1058 aa7.89□□□□□ -1.15
VPS50-217ENST00000485140 SIRT1Q96EB6 747 aa7.89□□□□□ -1.15
VPS50-217ENST00000485140 RAB15P59190 212 aa7.88□□□□□ -1.15
VPS50-217ENST00000485140 CBLBQ13191 982 aa7.88□□□□□ -1.15
VPS50-217ENST00000485140 ATP5J2-PTCD1G3V325 749 aa7.87□□□□□ -1.15
VPS50-217ENST00000485140 LILRA1O75019 489 aa7.87□□□□□ -1.15
VPS50-217ENST00000485140 MYCP01106 439 aaPredicted RBP7.87□□□□□ -1.15
VPS50-217ENST00000485140 ERVK-9P63128 1117 aa7.87□□□□□ -1.15
VPS50-217ENST00000485140 GMCL1Q96IK5 515 aa7.87□□□□□ -1.15
VPS50-217ENST00000485140 POLMQ9NP87 494 aaPredicted RBP7.87□□□□□ -1.15
VPS50-217ENST00000485140 SNRKQ9NRH2 765 aa7.87□□□□□ -1.15
VPS50-217ENST00000485140 DNMT3LQ9UJW3 386 aa7.87□□□□□ -1.15
VPS50-217ENST00000485140 RELBQ01201 579 aa7.86□□□□□ -1.15
VPS50-217ENST00000485140 GIGYF1O75420 1035 aaPredicted RBP7.85□□□□□ -1.15
VPS50-217ENST00000485140 RNF144AP50876 292 aaPredicted RBP7.85□□□□□ -1.15
VPS50-217ENST00000485140 FLIIQ13045 1269 aa7.85□□□□□ -1.15
VPS50-217ENST00000485140 NANOS1Q8WY41 292 aaKnown RBP7.85□□□□□ -1.15
VPS50-217ENST00000485140 TMPRSS4Q9NRS4 437 aa7.85□□□□□ -1.15
VPS50-217ENST00000485140 PPFIA3O75145 1194 aa7.84□□□□□ -1.15
VPS50-217ENST00000485140 PTSQ03393 145 aa7.84□□□□□ -1.15
VPS50-217ENST00000485140 WDR44Q5JSH3 913 aa7.84□□□□□ -1.15
VPS50-217ENST00000485140 NLRP3Q96P20 1036 aa7.84□□□□□ -1.15
VPS50-217ENST00000485140 CYLDQ9NQC7 956 aa7.84□□□□□ -1.15
VPS50-217ENST00000485140 GNRH1P01148 92 aa7.83□□□□□ -1.16
VPS50-217ENST00000485140 GTF2E1P29083 439 aaPredicted RBP7.83□□□□□ -1.16
VPS50-217ENST00000485140 SLFNL1Q499Z3 407 aa7.83□□□□□ -1.16
VPS50-217ENST00000485140 LYSMD3Q7Z3D4 306 aa7.83□□□□□ -1.16
VPS50-217ENST00000485140 RNF217Q8TC41 542 aa7.83□□□□□ -1.16
VPS50-217ENST00000485140 INSM2Q96T92 566 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms