RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 TTC21BQ7Z4L5 1316 aa18.72■□□□□ 0.59
HDAC6-227ENST00000485102 TOM1L2Q6ZVM7 507 aa18.71■□□□□ 0.59
HDAC6-227ENST00000485102 BCL11BQ9C0K0 894 aaPredicted RBP18.71■□□□□ 0.59
HDAC6-227ENST00000485102 TTC21AQ8NDW8 1320 aa18.71■□□□□ 0.59
HDAC6-227ENST00000485102 SPON1Q9HCB6 807 aa18.7■□□□□ 0.58
HDAC6-227ENST00000485102 TRPM1Q7Z4N2 1603 aa18.7■□□□□ 0.58
HDAC6-227ENST00000485102 CPSF1Q10570 1443 aaKnown RBP18.69■□□□□ 0.58
HDAC6-227ENST00000485102 KCNQ2O43526 872 aa18.69■□□□□ 0.58
HDAC6-227ENST00000485102 CARD10Q9BWT7 1032 aa18.69■□□□□ 0.58
HDAC6-227ENST00000485102 LRRC37A3O60309 1634 aa18.69■□□□□ 0.58
HDAC6-227ENST00000485102 MARCH10Q8NA82 808 aaPredicted RBP18.67■□□□□ 0.58
HDAC6-227ENST00000485102 AKAP12Q02952 1782 aa18.66■□□□□ 0.58
HDAC6-227ENST00000485102 ZBTB7CA1YPR0 619 aa18.66■□□□□ 0.58
HDAC6-227ENST00000485102 ABCC6O95255 1503 aa18.65■□□□□ 0.58
HDAC6-227ENST00000485102 PROM2Q8N271 834 aa18.65■□□□□ 0.58
HDAC6-227ENST00000485102 ROCK2O75116 1388 aaKnown RBP18.65■□□□□ 0.58
HDAC6-227ENST00000485102 SBNO2Q9Y2G9 1366 aa18.65■□□□□ 0.58
HDAC6-227ENST00000485102 NINLQ9Y2I6 1382 aa18.65■□□□□ 0.58
HDAC6-227ENST00000485102 WNK3Q9BYP7 1800 aa18.65■□□□□ 0.58
HDAC6-227ENST00000485102 SIN3AQ96ST3 1273 aa18.64■□□□□ 0.57
HDAC6-227ENST00000485102 PTF1AQ7RTS3 328 aa18.63■□□□□ 0.57
HDAC6-227ENST00000485102 USP31Q70CQ4 1352 aa18.63■□□□□ 0.57
HDAC6-227ENST00000485102 CCDC7Q96M83 1385 aa18.63■□□□□ 0.57
HDAC6-227ENST00000485102 NFAT5O94916 1531 aa18.63■□□□□ 0.57
HDAC6-227ENST00000485102 RGPD5Q99666 1765 aa18.63■□□□□ 0.57
HDAC6-227ENST00000485102 EXOC5O00471 708 aa18.62■□□□□ 0.57
HDAC6-227ENST00000485102 ANO8Q9HCE9 1232 aaPredicted RBP18.62■□□□□ 0.57
HDAC6-227ENST00000485102 KTN1Q86UP2 1357 aaKnown RBP18.62■□□□□ 0.57
HDAC6-227ENST00000485102 PPP1R1BQ9UD71 204 aaPredicted RBP18.61■□□□□ 0.57
HDAC6-227ENST00000485102 CSB-PGBD3P0DP91 1061 aa18.6■□□□□ 0.57
HDAC6-227ENST00000485102 CASZ1Q86V15 1759 aa18.59■□□□□ 0.57
HDAC6-227ENST00000485102 MON2Q7Z3U7 1717 aa18.58■□□□□ 0.57
HDAC6-227ENST00000485102 USP54Q70EL1 1684 aa18.58■□□□□ 0.57
HDAC6-227ENST00000485102 DCAF8L1A6NGE4 600 aa18.57■□□□□ 0.56
HDAC6-227ENST00000485102 YY1P25490 414 aa18.57■□□□□ 0.56
HDAC6-227ENST00000485102 TXNRD1Q16881 649 aa18.57■□□□□ 0.56
HDAC6-227ENST00000485102 PUS7Q96PZ0 661 aaKnown RBP18.57■□□□□ 0.56
HDAC6-227ENST00000485102 TNS2Q63HR2 1409 aa18.57■□□□□ 0.56
HDAC6-227ENST00000485102 ERBB3P21860 1342 aa18.56■□□□□ 0.56
HDAC6-227ENST00000485102 SOX12O15370 315 aa18.56■□□□□ 0.56
HDAC6-227ENST00000485102 NEUROD1Q13562 356 aa18.56■□□□□ 0.56
HDAC6-227ENST00000485102 CD163L1Q9NR16 1453 aa18.55■□□□□ 0.56
HDAC6-227ENST00000485102 SLC15A2Q16348 729 aa18.55■□□□□ 0.56
HDAC6-227ENST00000485102 PTGER2P43116 358 aa18.54■□□□□ 0.56
HDAC6-227ENST00000485102 PDGFDQ9GZP0 370 aaPredicted RBP18.54■□□□□ 0.56
HDAC6-227ENST00000485102 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.53■□□□□ 0.56
HDAC6-227ENST00000485102 STK32BQ9NY57 414 aa18.53■□□□□ 0.56
HDAC6-227ENST00000485102 CARD11Q9BXL7 1154 aa18.52■□□□□ 0.56
HDAC6-227ENST00000485102 IL2RBP14784 551 aa18.51■□□□□ 0.55
HDAC6-227ENST00000485102 HDGFL2Q7Z4V5 671 aaPredicted RBP18.51■□□□□ 0.55
HDAC6-227ENST00000485102 NME9Q86XW9 330 aa18.51■□□□□ 0.55
HDAC6-227ENST00000485102 NHSQ6T4R5 1651 aa18.5■□□□□ 0.55
HDAC6-227ENST00000485102 EDC4Q6P2E9 1401 aaKnown RBP18.5■□□□□ 0.55
HDAC6-227ENST00000485102 ZBTB7AO95365 584 aa18.5■□□□□ 0.55
HDAC6-227ENST00000485102 SLC12A5Q9H2X9 1139 aa18.5■□□□□ 0.55
HDAC6-227ENST00000485102 NLRP2Q9NX02 1062 aa18.5■□□□□ 0.55
HDAC6-227ENST00000485102 UTRNP46939 3433 aa18.49■□□□□ 0.55
HDAC6-227ENST00000485102 SGIP1Q9BQI5 828 aa18.49■□□□□ 0.55
HDAC6-227ENST00000485102 MTFR1LQ9H019 292 aa18.49■□□□□ 0.55
HDAC6-227ENST00000485102 TERF2IPQ9NYB0 399 aa18.49■□□□□ 0.55
HDAC6-227ENST00000485102 ANKRD24Q8TF21 1146 aa18.48■□□□□ 0.55
HDAC6-227ENST00000485102 KAT6BQ8WYB5 2073 aa18.48■□□□□ 0.55
HDAC6-227ENST00000485102 LTN1O94822 1766 aa18.47■□□□□ 0.55
HDAC6-227ENST00000485102 TMC1Q8TDI8 760 aa18.47■□□□□ 0.55
HDAC6-227ENST00000485102 IP6K1Q92551 441 aa18.46■□□□□ 0.55
HDAC6-227ENST00000485102 SYT17Q9BSW7 474 aa18.46■□□□□ 0.55
HDAC6-227ENST00000485102 ATF5Q9Y2D1 282 aaPredicted RBP18.46■□□□□ 0.55
HDAC6-227ENST00000485102 SLC24A1O60721 1099 aa18.45■□□□□ 0.54
HDAC6-227ENST00000485102 ACSBG1Q96GR2 724 aa18.45■□□□□ 0.54
HDAC6-227ENST00000485102 PAPPAQ13219 1627 aa18.45■□□□□ 0.54
HDAC6-227ENST00000485102 MYOM1P52179 1685 aa18.44■□□□□ 0.54
HDAC6-227ENST00000485102 A0A1W2PP64 1363 aa18.44■□□□□ 0.54
HDAC6-227ENST00000485102 FHDC1Q9C0D6 1143 aaPredicted RBP18.43■□□□□ 0.54
HDAC6-227ENST00000485102 BTAF1O14981 1849 aa18.43■□□□□ 0.54
HDAC6-227ENST00000485102 MAP3K5Q99683 1374 aa18.42■□□□□ 0.54
HDAC6-227ENST00000485102 SLC27A3Q5K4L6 730 aa18.42■□□□□ 0.54
HDAC6-227ENST00000485102 SLC16A10Q8TF71 515 aa18.41■□□□□ 0.54
HDAC6-227ENST00000485102 TESK2Q96S53 571 aa18.41■□□□□ 0.54
HDAC6-227ENST00000485102 LRRC4BQ9NT99 713 aa18.41■□□□□ 0.54
HDAC6-227ENST00000485102 FAM208AQ9UK61 1670 aaKnown RBP18.4■□□□□ 0.54
HDAC6-227ENST00000485102 AKT1S1Q96B36 256 aa18.39■□□□□ 0.53
HDAC6-227ENST00000485102 ARXQ96QS3 562 aa18.39■□□□□ 0.53
HDAC6-227ENST00000485102 TONSLQ96HA7 1378 aa18.39■□□□□ 0.53
HDAC6-227ENST00000485102 ZNF827Q17R98 1081 aa18.38■□□□□ 0.53
HDAC6-227ENST00000485102 COG3Q96JB2 828 aa18.37■□□□□ 0.53
HDAC6-227ENST00000485102 MAP3K19Q56UN5 1328 aa18.37■□□□□ 0.53
HDAC6-227ENST00000485102 CHD4Q14839 1912 aa18.37■□□□□ 0.53
HDAC6-227ENST00000485102 HOXC9P31274 260 aa18.36■□□□□ 0.53
HDAC6-227ENST00000485102 QSER1Q2KHR3 1735 aa18.36■□□□□ 0.53
HDAC6-227ENST00000485102 DDX54Q8TDD1 881 aaKnown RBP18.36■□□□□ 0.53
HDAC6-227ENST00000485102 ANKRD36BQ8N2N9 1353 aa18.35■□□□□ 0.53
HDAC6-227ENST00000485102 ST20-MTHFSA0A0A6YYL1 179 aa18.35■□□□□ 0.53
HDAC6-227ENST00000485102 ZNF784Q8NCA9 323 aaPredicted RBP18.35■□□□□ 0.53
HDAC6-227ENST00000485102 COL24A1Q17RW2 1714 aa18.35■□□□□ 0.53
HDAC6-227ENST00000485102 ZCRB1Q8TBF4 217 aaKnown RBP18.33■□□□□ 0.52
HDAC6-227ENST00000485102 LTV1Q96GA3 475 aaPredicted RBP18.33■□□□□ 0.52
HDAC6-227ENST00000485102 RTL1A6NKG5 1358 aa18.32■□□□□ 0.52
HDAC6-227ENST00000485102 CGNL1Q0VF96 1302 aa18.32■□□□□ 0.52
HDAC6-227ENST00000485102 AMPHP49418 695 aa18.32■□□□□ 0.52
HDAC6-227ENST00000485102 PRIM1P49642 420 aaKnown RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms