RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 HOXC9P31274 260 aa13.52□□□□□ -0.25
USP39-215ENST00000481409 PEAK1Q9H792 1746 aa13.51□□□□□ -0.25
USP39-215ENST00000481409 FCHSD2O94868 740 aa13.51□□□□□ -0.25
USP39-215ENST00000481409 IL13P35225 146 aa13.51□□□□□ -0.25
USP39-215ENST00000481409 ADAMTS8Q9UP79 889 aa13.51□□□□□ -0.25
USP39-215ENST00000481409 ABCA3Q99758 1704 aa13.5□□□□□ -0.25
USP39-215ENST00000481409 PIP4K2BP78356 416 aa13.5□□□□□ -0.25
USP39-215ENST00000481409 DCAF8L1A6NGE4 600 aa13.49□□□□□ -0.25
USP39-215ENST00000481409 PLEKHG2Q9H7P9 1386 aa13.48□□□□□ -0.25
USP39-215ENST00000481409 NEFMP07197 916 aa13.48□□□□□ -0.25
USP39-215ENST00000481409 U2AF1L5P0DN76 240 aaPredicted RBP13.48□□□□□ -0.25
USP39-215ENST00000481409 FBLN1P23142 703 aa13.48□□□□□ -0.25
USP39-215ENST00000481409 HAP1P54257 671 aaPredicted RBP13.48□□□□□ -0.25
USP39-215ENST00000481409 U2AF1Q01081 240 aaKnown RBP eCLIP13.48□□□□□ -0.25
USP39-215ENST00000481409 EIF4A2Q14240 407 aaKnown RBP13.48□□□□□ -0.25
USP39-215ENST00000481409 RGPD1P0DJD0 1748 aa13.47□□□□□ -0.25
USP39-215ENST00000481409 JCADQ9P266 1359 aa13.47□□□□□ -0.25
USP39-215ENST00000481409 FAM208AQ9UK61 1670 aaKnown RBP13.47□□□□□ -0.25
USP39-215ENST00000481409 SOX12O15370 315 aa13.47□□□□□ -0.25
USP39-215ENST00000481409 HSP90AB2PQ58FF8 381 aa13.47□□□□□ -0.25
USP39-215ENST00000481409 RUNDC1Q96C34 613 aa13.47□□□□□ -0.25
USP39-215ENST00000481409 COL18A1P39060 1754 aa13.47□□□□□ -0.25
USP39-215ENST00000481409 U2SURPO15042 1029 aaKnown RBP13.46□□□□□ -0.25
USP39-215ENST00000481409 SPATA31A6Q5VVP1 1343 aa13.45□□□□□ -0.26
USP39-215ENST00000481409 ZBED9Q6R2W3 1325 aa13.45□□□□□ -0.26
USP39-215ENST00000481409 IGSF1Q8N6C5 1336 aa13.45□□□□□ -0.26
USP39-215ENST00000481409 HNRNPUQ00839 825 aaKnown RBP eCLIP13.45□□□□□ -0.26
USP39-215ENST00000481409 KDRP35968 1356 aa13.45□□□□□ -0.26
USP39-215ENST00000481409 KIAA0232Q92628 1395 aa13.45□□□□□ -0.26
USP39-215ENST00000481409 ZC3H6P61129 1189 aaKnown RBP13.44□□□□□ -0.26
USP39-215ENST00000481409 PRDM11Q9NQV5 511 aa13.44□□□□□ -0.26
USP39-215ENST00000481409 COL14A1Q05707 1796 aaKnown RBP13.44□□□□□ -0.26
USP39-215ENST00000481409 NCAPD2Q15021 1401 aa13.44□□□□□ -0.26
USP39-215ENST00000481409 LMO7Q8WWI1 1683 aa13.44□□□□□ -0.26
USP39-215ENST00000481409 CAMTA1Q9Y6Y1 1673 aa13.44□□□□□ -0.26
USP39-215ENST00000481409 ERBB3P21860 1342 aa13.43□□□□□ -0.26
USP39-215ENST00000481409 MAPK8IP3Q9UPT6 1336 aa13.43□□□□□ -0.26
USP39-215ENST00000481409 CENPBP07199 599 aaPredicted RBP13.43□□□□□ -0.26
USP39-215ENST00000481409 CABLES1Q8TDN4 633 aa13.43□□□□□ -0.26
USP39-215ENST00000481409 PLEKHF1Q96S99 279 aa13.43□□□□□ -0.26
USP39-215ENST00000481409 RSPH6AQ9H0K4 717 aa13.43□□□□□ -0.26
USP39-215ENST00000481409 PDE3BQ13370 1112 aa13.42□□□□□ -0.26
USP39-215ENST00000481409 CCDC27Q2M243 656 aa13.42□□□□□ -0.26
USP39-215ENST00000481409 ANKRD24Q8TF21 1146 aa13.41□□□□□ -0.26
USP39-215ENST00000481409 YTHDC1Q96MU7 727 aaKnown RBP13.41□□□□□ -0.26
USP39-215ENST00000481409 EYA1Q99502 592 aa13.41□□□□□ -0.26
USP39-215ENST00000481409 AXIN2Q9Y2T1 843 aa13.4□□□□□ -0.26
USP39-215ENST00000481409 RGPD5Q99666 1765 aa13.4□□□□□ -0.26
USP39-215ENST00000481409 PRKAR2BP31323 418 aa13.39□□□□□ -0.27
USP39-215ENST00000481409 LMOD3Q0VAK6 560 aa13.39□□□□□ -0.27
USP39-215ENST00000481409 SULT6B1Q6IMI4 303 aa13.39□□□□□ -0.27
USP39-215ENST00000481409 NWD2Q9ULI1 1742 aa13.39□□□□□ -0.27
USP39-215ENST00000481409 WDR17Q8IZU2 1322 aa13.39□□□□□ -0.27
USP39-215ENST00000481409 COL5A2P05997 1499 aaPredicted RBP13.38□□□□□ -0.27
USP39-215ENST00000481409 ZBTB7CA1YPR0 619 aa13.38□□□□□ -0.27
USP39-215ENST00000481409 TCP11L2Q8N4U5 519 aa13.38□□□□□ -0.27
USP39-215ENST00000481409 FAM83GA6ND36 823 aa13.37□□□□□ -0.27
USP39-215ENST00000481409 APAF1O14727 1248 aa13.37□□□□□ -0.27
USP39-215ENST00000481409 CCDC146Q8IYE0 955 aa13.37□□□□□ -0.27
USP39-215ENST00000481409 GAS2L2Q8NHY3 880 aa13.37□□□□□ -0.27
USP39-215ENST00000481409 RNF39Q9H2S5 420 aa13.37□□□□□ -0.27
USP39-215ENST00000481409 PLEKHG5O94827 1062 aa13.36□□□□□ -0.27
USP39-215ENST00000481409 HMOX1P09601 288 aa13.36□□□□□ -0.27
USP39-215ENST00000481409 CSB-PGBD3P0DP91 1061 aa13.36□□□□□ -0.27
USP39-215ENST00000481409 TMPOP42166 694 aaKnown RBP13.36□□□□□ -0.27
USP39-215ENST00000481409 CHRNA2Q15822 529 aa13.36□□□□□ -0.27
USP39-215ENST00000481409 NFE2L2Q16236 605 aa13.36□□□□□ -0.27
USP39-215ENST00000481409 AMOTQ4VCS5 1084 aa13.36□□□□□ -0.27
USP39-215ENST00000481409 NBPF6Q5VWK0 638 aa13.36□□□□□ -0.27
USP39-215ENST00000481409 LTV1Q96GA3 475 aaPredicted RBP13.36□□□□□ -0.27
USP39-215ENST00000481409 NBPF4Q96M43 638 aa13.36□□□□□ -0.27
USP39-215ENST00000481409 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.36□□□□□ -0.272e-6■■□□□ 11.9
USP39-215ENST00000481409 HTATSF1O43719 755 aaKnown RBP13.35□□□□□ -0.27
USP39-215ENST00000481409 HSPA1LP34931 641 aa13.35□□□□□ -0.27
USP39-215ENST00000481409 EVA1CP58658 441 aa13.35□□□□□ -0.27
USP39-215ENST00000481409 CALD1Q05682 793 aaKnown RBP13.35□□□□□ -0.27
USP39-215ENST00000481409 WDR63Q8IWG1 891 aa13.35□□□□□ -0.27
USP39-215ENST00000481409 CARD10Q9BWT7 1032 aa13.35□□□□□ -0.27
USP39-215ENST00000481409 ZNF521Q96K83 1311 aa13.35□□□□□ -0.27
USP39-215ENST00000481409 CRB1P82279 1406 aa13.34□□□□□ -0.27
USP39-215ENST00000481409 PLCH1Q4KWH8 1693 aa13.34□□□□□ -0.27
USP39-215ENST00000481409 SLIT2O94813 1529 aa13.34□□□□□ -0.27
USP39-215ENST00000481409 RGPD2P0DJD1 1756 aa13.33□□□□□ -0.28
USP39-215ENST00000481409 HOXD11P31277 338 aaPredicted RBP13.33□□□□□ -0.28
USP39-215ENST00000481409 PLEKHO1Q53GL0 409 aaPredicted RBP13.33□□□□□ -0.28
USP39-215ENST00000481409 AEBP1Q8IUX7 1158 aa13.33□□□□□ -0.28
USP39-215ENST00000481409 RAPGEF4Q8WZA2 1011 aa13.33□□□□□ -0.28
USP39-215ENST00000481409 NLRP2Q9NX02 1062 aa13.33□□□□□ -0.28
USP39-215ENST00000481409 BTG4Q9NY30 223 aa13.33□□□□□ -0.28
USP39-215ENST00000481409 THRAP3Q9Y2W1 955 aaKnown RBP13.33□□□□□ -0.28
USP39-215ENST00000481409 IL16Q14005 1332 aa13.33□□□□□ -0.28
USP39-215ENST00000481409 RIPK4P57078 832 aa13.32□□□□□ -0.28
USP39-215ENST00000481409 GOLGA2Q08379 1002 aa13.32□□□□□ -0.28
USP39-215ENST00000481409 TOM1L2Q6ZVM7 507 aa13.32□□□□□ -0.28
USP39-215ENST00000481409 WWC1Q8IX03 1113 aa13.32□□□□□ -0.28
USP39-215ENST00000481409 FBXO41Q8TF61 875 aa13.32□□□□□ -0.28
USP39-215ENST00000481409 CDCA7Q9BWT1 371 aaPredicted RBP13.32□□□□□ -0.28
USP39-215ENST00000481409 NRAPQ86VF7 1730 aa13.31□□□□□ -0.28
USP39-215ENST00000481409 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.31□□□□□ -0.28
USP39-215ENST00000481409 PARP4Q9UKK3 1724 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms