RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 AXIN2Q9Y2T1 843 aa21.6■■□□□ 1.05
LIMS3-203ENST00000480744 NFAT5O94916 1531 aa21.6■■□□□ 1.05
LIMS3-203ENST00000480744 R3HDM1Q15032 1099 aaKnown RBP21.59■■□□□ 1.05
LIMS3-203ENST00000480744 ARHGEF25Q86VW2 580 aa21.59■■□□□ 1.05
LIMS3-203ENST00000480744 WDR17Q8IZU2 1322 aa21.58■■□□□ 1.05
LIMS3-203ENST00000480744 CSB-PGBD3P0DP91 1061 aa21.58■■□□□ 1.05
LIMS3-203ENST00000480744 TRIM26Q12899 539 aaPredicted RBP21.58■■□□□ 1.05
LIMS3-203ENST00000480744 CAMKK2Q96RR4 588 aa21.58■■□□□ 1.05
LIMS3-203ENST00000480744 RREB1Q92766 1687 aa21.58■■□□□ 1.05
LIMS3-203ENST00000480744 LTN1O94822 1766 aa21.58■■□□□ 1.04
LIMS3-203ENST00000480744 CD163L1Q9NR16 1453 aa21.58■■□□□ 1.04
LIMS3-203ENST00000480744 SBF2Q86WG5 1849 aa21.57■■□□□ 1.04
LIMS3-203ENST00000480744 HDGFL2Q7Z4V5 671 aaPredicted RBP21.57■■□□□ 1.04
LIMS3-203ENST00000480744 USP54Q70EL1 1684 aa21.56■■□□□ 1.04
LIMS3-203ENST00000480744 NUP188Q5SRE5 1749 aa21.56■■□□□ 1.04
LIMS3-203ENST00000480744 PEAK1Q9H792 1746 aa21.56■■□□□ 1.04
LIMS3-203ENST00000480744 DDB1Q16531 1140 aa21.56■■□□□ 1.04
LIMS3-203ENST00000480744 NME9Q86XW9 330 aa21.56■■□□□ 1.04
LIMS3-203ENST00000480744 SLC12A5Q9H2X9 1139 aa21.56■■□□□ 1.04
LIMS3-203ENST00000480744 OVOS2A0A0G2JMS6 1433 aa21.55■■□□□ 1.04
LIMS3-203ENST00000480744 OVOS2A0A0J9YW53 1432 aa21.55■■□□□ 1.04
LIMS3-203ENST00000480744 OVOS2Q6IE36 1432 aa21.55■■□□□ 1.04
LIMS3-203ENST00000480744 PARD3Q8TEW0 1356 aa21.55■■□□□ 1.04
LIMS3-203ENST00000480744 USP31Q70CQ4 1352 aa21.52■■□□□ 1.04
LIMS3-203ENST00000480744 ABCC6O95255 1503 aa21.52■■□□□ 1.04
LIMS3-203ENST00000480744 C11orf95C9JLR9 678 aaPredicted RBP21.52■■□□□ 1.04
LIMS3-203ENST00000480744 TERF2IPQ9NYB0 399 aa21.52■■□□□ 1.04
LIMS3-203ENST00000480744 A0A1W2PP64 1363 aa21.51■■□□□ 1.03
LIMS3-203ENST00000480744 CARD10Q9BWT7 1032 aa21.51■■□□□ 1.03
LIMS3-203ENST00000480744 EDC4Q6P2E9 1401 aaKnown RBP21.51■■□□□ 1.03
LIMS3-203ENST00000480744 ST20-MTHFSA0A0A6YYL1 179 aa21.5■■□□□ 1.03
LIMS3-203ENST00000480744 CDCA7Q9BWT1 371 aaPredicted RBP21.5■■□□□ 1.03
LIMS3-203ENST00000480744 CCDC7Q96M83 1385 aa21.48■■□□□ 1.03
LIMS3-203ENST00000480744 RGPD3A6NKT7 1758 aaPredicted RBP21.47■■□□□ 1.03
LIMS3-203ENST00000480744 RGPD4Q7Z3J3 1758 aa21.47■■□□□ 1.03
LIMS3-203ENST00000480744 NBPF14Q5TI25 921 aa21.47■■□□□ 1.03
LIMS3-203ENST00000480744 MARCH10Q8NA82 808 aaPredicted RBP21.47■■□□□ 1.03
LIMS3-203ENST00000480744 PUS7Q96PZ0 661 aaKnown RBP21.47■■□□□ 1.03
LIMS3-203ENST00000480744 TESK2Q96S53 571 aa21.47■■□□□ 1.03
LIMS3-203ENST00000480744 NLRP2Q9NX02 1062 aa21.45■■□□□ 1.02
LIMS3-203ENST00000480744 EXOC5O00471 708 aa21.44■■□□□ 1.02
LIMS3-203ENST00000480744 NINLQ9Y2I6 1382 aa21.44■■□□□ 1.02
LIMS3-203ENST00000480744 PTF1AQ7RTS3 328 aa21.43■■□□□ 1.02
LIMS3-203ENST00000480744 ERBB3P21860 1342 aa21.43■■□□□ 1.02
LIMS3-203ENST00000480744 KAT6BQ8WYB5 2073 aa21.43■■□□□ 1.02
LIMS3-203ENST00000480744 TNS2Q63HR2 1409 aa21.42■■□□□ 1.02
LIMS3-203ENST00000480744 BCL11BQ9C0K0 894 aaPredicted RBP21.42■■□□□ 1.02
LIMS3-203ENST00000480744 USP47Q96K76 1375 aa21.41■■□□□ 1.02
LIMS3-203ENST00000480744 SLC24A1O60721 1099 aa21.41■■□□□ 1.02
LIMS3-203ENST00000480744 ANKRD24Q8TF21 1146 aa21.41■■□□□ 1.02
LIMS3-203ENST00000480744 PLSCR1O15162 318 aa21.39■■□□□ 1.01
LIMS3-203ENST00000480744 BCL9O00512 1426 aa21.38■■□□□ 1.01
LIMS3-203ENST00000480744 FAM208AQ9UK61 1670 aaKnown RBP21.38■■□□□ 1.01
LIMS3-203ENST00000480744 COG3Q96JB2 828 aa21.38■■□□□ 1.01
LIMS3-203ENST00000480744 IL2RBP14784 551 aa21.37■■□□□ 1.01
LIMS3-203ENST00000480744 TMF1P82094 1093 aa21.37■■□□□ 1.01
LIMS3-203ENST00000480744 LTV1Q96GA3 475 aaPredicted RBP21.37■■□□□ 1.01
LIMS3-203ENST00000480744 NHSQ6T4R5 1651 aa21.37■■□□□ 1.01
LIMS3-203ENST00000480744 RGPD2P0DJD1 1756 aa21.36■■□□□ 1.01
LIMS3-203ENST00000480744 ANKRD36BQ8N2N9 1353 aa21.36■■□□□ 1.01
LIMS3-203ENST00000480744 IP6K1Q92551 441 aa21.35■■□□□ 1.01
LIMS3-203ENST00000480744 KIF20BQ96Q89 1820 aa21.34■■□□□ 1.01
LIMS3-203ENST00000480744 ACSBG1Q96GR2 724 aa21.34■■□□□ 1.01
LIMS3-203ENST00000480744 KCNQ2O43526 872 aa21.33■■□□□ 1.01
LIMS3-203ENST00000480744 AMPHP49418 695 aa21.33■■□□□ 1.01
LIMS3-203ENST00000480744 ANO8Q9HCE9 1232 aaPredicted RBP21.33■■□□□ 1.01
LIMS3-203ENST00000480744 MAP3K19Q56UN5 1328 aa21.32■■□□□ 1
LIMS3-203ENST00000480744 BTAF1O14981 1849 aa21.32■■□□□ 1
LIMS3-203ENST00000480744 FBLN1P23142 703 aa21.32■■□□□ 1
LIMS3-203ENST00000480744 PCGF6Q9BYE7 350 aa21.32■■□□□ 1
LIMS3-203ENST00000480744 PROM2Q8N271 834 aa21.31■■□□□ 1
LIMS3-203ENST00000480744 CASZ1Q86V15 1759 aa21.31■■□□□ 1
LIMS3-203ENST00000480744 HOXC9P31274 260 aa21.3■■□□□ 1
LIMS3-203ENST00000480744 TXNRD1Q16881 649 aa21.3■■□□□ 1
LIMS3-203ENST00000480744 GGNBP2Q9H3C7 697 aa21.3■■□□□ 1
LIMS3-203ENST00000480744 SPON1Q9HCB6 807 aa21.3■■□□□ 1
LIMS3-203ENST00000480744 PPP1R1BQ9UD71 204 aaPredicted RBP21.3■■□□□ 1
LIMS3-203ENST00000480744 CDCA8Q53HL2 280 aa21.29■■□□□ 1
LIMS3-203ENST00000480744 MYOM1P52179 1685 aa21.28■■□□□ 1
LIMS3-203ENST00000480744 FYB1O15117 783 aa21.27■■□□□ 1
LIMS3-203ENST00000480744 RRS1Q15050 365 aaKnown RBP21.27■■□□□ 1
LIMS3-203ENST00000480744 DDX54Q8TDD1 881 aaKnown RBP21.27■■□□□ 1
LIMS3-203ENST00000480744 STK32BQ9NY57 414 aa21.27■■□□□ 1
LIMS3-203ENST00000480744 RTL1A6NKG5 1358 aa21.24■□□□□ 0.99
LIMS3-203ENST00000480744 PDGFDQ9GZP0 370 aaPredicted RBP21.24■□□□□ 0.99
LIMS3-203ENST00000480744 TIMELESSQ9UNS1 1208 aa21.24■□□□□ 0.99
LIMS3-203ENST00000480744 DOT1LQ8TEK3 1739 aa21.24■□□□□ 0.99
LIMS3-203ENST00000480744 SHANK3Q9BYB0 1731 aa21.24■□□□□ 0.99
LIMS3-203ENST00000480744 ZBTB7AO95365 584 aa21.22■□□□□ 0.99
LIMS3-203ENST00000480744 SLC15A2Q16348 729 aa21.22■□□□□ 0.99
LIMS3-203ENST00000480744 SMG6Q86US8 1419 aaKnown RBP21.21■□□□□ 0.99
LIMS3-203ENST00000480744 CLSPNQ9HAW4 1339 aa21.21■□□□□ 0.99
LIMS3-203ENST00000480744 NSD3Q9BZ95 1437 aa21.21■□□□□ 0.99
LIMS3-203ENST00000480744 MEGF6O75095 1541 aa21.2■□□□□ 0.98
LIMS3-203ENST00000480744 USHBP1Q8N6Y0 703 aa21.2■□□□□ 0.98
LIMS3-203ENST00000480744 PAPPAQ13219 1627 aa21.19■□□□□ 0.98
LIMS3-203ENST00000480744 SYTL4Q96C24 671 aaPredicted RBP21.19■□□□□ 0.98
LIMS3-203ENST00000480744 NBPF6Q5VWK0 638 aa21.18■□□□□ 0.98
LIMS3-203ENST00000480744 ZCRB1Q8TBF4 217 aaKnown RBP21.18■□□□□ 0.98
LIMS3-203ENST00000480744 NBPF4Q96M43 638 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms