RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 IP6K1Q92551 441 aa23.41■■□□□ 1.34
UPF3A-206ENST00000480362 RTL1A6NKG5 1358 aa23.4■■□□□ 1.34
UPF3A-206ENST00000480362 EIF4A2Q14240 407 aaKnown RBP23.4■■□□□ 1.34
UPF3A-206ENST00000480362 COL16A1Q07092 1604 aaPredicted RBP23.4■■□□□ 1.34
UPF3A-206ENST00000480362 HAP1P54257 671 aaPredicted RBP23.39■■□□□ 1.33
UPF3A-206ENST00000480362 BLMP54132 1417 aaPredicted RBP23.37■■□□□ 1.33
UPF3A-206ENST00000480362 CCDC146Q8IYE0 955 aa23.36■■□□□ 1.33
UPF3A-206ENST00000480362 CPDO75976 1380 aa23.35■■□□□ 1.33
UPF3A-206ENST00000480362 ABCA3Q99758 1704 aa23.34■■□□□ 1.33
UPF3A-206ENST00000480362 SENP3-EIF4A1A0A087X0R7 540 aa23.34■■□□□ 1.33
UPF3A-206ENST00000480362 LTV1Q96GA3 475 aaPredicted RBP23.34■■□□□ 1.33
UPF3A-206ENST00000480362 KIAA0232Q92628 1395 aa23.34■■□□□ 1.33
UPF3A-206ENST00000480362 COL22A1Q8NFW1 1626 aaPredicted RBP23.33■■□□□ 1.33
UPF3A-206ENST00000480362 AXIN2Q9Y2T1 843 aa23.33■■□□□ 1.33
UPF3A-206ENST00000480362 CHRNA2Q15822 529 aa23.32■■□□□ 1.32
UPF3A-206ENST00000480362 RUNDC1Q96C34 613 aa23.32■■□□□ 1.32
UPF3A-206ENST00000480362 FCHSD2O94868 740 aa23.31■■□□□ 1.32
UPF3A-206ENST00000480362 HMOX1P09601 288 aa23.31■■□□□ 1.32
UPF3A-206ENST00000480362 PRDM11Q9NQV5 511 aa23.31■■□□□ 1.32
UPF3A-206ENST00000480362 FBXO41Q8TF61 875 aa23.3■■□□□ 1.32
UPF3A-206ENST00000480362 PNNQ9H307 717 aaKnown RBP23.3■■□□□ 1.32
UPF3A-206ENST00000480362 COL18A1P39060 1754 aa23.29■■□□□ 1.32
UPF3A-206ENST00000480362 ANKRD24Q8TF21 1146 aa23.29■■□□□ 1.32
UPF3A-206ENST00000480362 EYA1Q99502 592 aa23.29■■□□□ 1.32
UPF3A-206ENST00000480362 RSPH6AQ9H0K4 717 aa23.29■■□□□ 1.32
UPF3A-206ENST00000480362 RGPD1P0DJD0 1748 aa23.28■■□□□ 1.32
UPF3A-206ENST00000480362 SULT6B1Q6IMI4 303 aa23.28■■□□□ 1.32
UPF3A-206ENST00000480362 PLEKHF1Q96S99 279 aa23.28■■□□□ 1.32
UPF3A-206ENST00000480362 RGPD5Q99666 1765 aa23.27■■□□□ 1.32
UPF3A-206ENST00000480362 APAF1O14727 1248 aa23.27■■□□□ 1.32
UPF3A-206ENST00000480362 ABCC6O95255 1503 aa23.27■■□□□ 1.32
UPF3A-206ENST00000480362 PRKAR2BP31323 418 aa23.26■■□□□ 1.31
UPF3A-206ENST00000480362 AEBP1Q8IUX7 1158 aa23.26■■□□□ 1.31
UPF3A-206ENST00000480362 SALL2Q9Y467 1007 aaPredicted RBP23.26■■□□□ 1.31
UPF3A-206ENST00000480362 IGSF1Q8N6C5 1336 aa23.26■■□□□ 1.31
UPF3A-206ENST00000480362 FAM83GA6ND36 823 aa23.25■■□□□ 1.31
UPF3A-206ENST00000480362 HSPA1LP34931 641 aa23.25■■□□□ 1.31
UPF3A-206ENST00000480362 ZBED9Q6R2W3 1325 aa23.25■■□□□ 1.31
UPF3A-206ENST00000480362 JCADQ9P266 1359 aa23.25■■□□□ 1.31
UPF3A-206ENST00000480362 TCP11L2Q8N4U5 519 aa23.24■■□□□ 1.31
UPF3A-206ENST00000480362 NUTM2BA6NNL0 878 aaPredicted RBP23.23■■□□□ 1.31
UPF3A-206ENST00000480362 NUTM2EB1AL46 878 aaPredicted RBP23.23■■□□□ 1.31
UPF3A-206ENST00000480362 NBPF6Q5VWK0 638 aa23.23■■□□□ 1.31
UPF3A-206ENST00000480362 NUTM2AQ8IVF1 878 aaPredicted RBP23.23■■□□□ 1.31
UPF3A-206ENST00000480362 NBPF4Q96M43 638 aa23.23■■□□□ 1.31
UPF3A-206ENST00000480362 MAPK8IP3Q9UPT6 1336 aa23.23■■□□□ 1.31
UPF3A-206ENST00000480362 NEFMP07197 916 aa23.22■■□□□ 1.31
UPF3A-206ENST00000480362 ERBB3P21860 1342 aa23.22■■□□□ 1.31
UPF3A-206ENST00000480362 USHBP1Q8N6Y0 703 aa23.21■■□□□ 1.31
UPF3A-206ENST00000480362 CAMTA1Q9Y6Y1 1673 aa23.21■■□□□ 1.31
UPF3A-206ENST00000480362 LMO7Q8WWI1 1683 aa23.2■■□□□ 1.3
UPF3A-206ENST00000480362 KDRP35968 1356 aa23.2■■□□□ 1.3
UPF3A-206ENST00000480362 CENPBP07199 599 aaPredicted RBP23.2■■□□□ 1.3
UPF3A-206ENST00000480362 CSB-PGBD3P0DP91 1061 aa23.2■■□□□ 1.3
UPF3A-206ENST00000480362 PHACTR3Q96KR7 559 aa23.2■■□□□ 1.3
UPF3A-206ENST00000480362 RRP7AQ9Y3A4 280 aaKnown RBP23.2■■□□□ 1.3
UPF3A-206ENST00000480362 RGPD2P0DJD1 1756 aa23.19■■□□□ 1.3
UPF3A-206ENST00000480362 ADAMTS2O95450 1211 aa23.19■■□□□ 1.3
UPF3A-206ENST00000480362 NEUROD2Q15784 382 aa23.18■■□□□ 1.3
UPF3A-206ENST00000480362 ILDR1Q86SU0 546 aaPredicted RBP23.18■■□□□ 1.3
UPF3A-206ENST00000480362 NGEFQ8N5V2 710 aa23.18■■□□□ 1.3
UPF3A-206ENST00000480362 TMPOP42166 694 aaKnown RBP23.17■■□□□ 1.3
UPF3A-206ENST00000480362 NLRP2Q9NX02 1062 aa23.17■■□□□ 1.3
UPF3A-206ENST00000480362 COL14A1Q05707 1796 aaKnown RBP23.17■■□□□ 1.3
UPF3A-206ENST00000480362 EVA1CP58658 441 aa23.16■■□□□ 1.3
UPF3A-206ENST00000480362 BTG4Q9NY30 223 aa23.15■■□□□ 1.3
UPF3A-206ENST00000480362 COL5A2P05997 1499 aaPredicted RBP23.15■■□□□ 1.3
UPF3A-206ENST00000480362 SPATA31A6Q5VVP1 1343 aa23.14■■□□□ 1.3
UPF3A-206ENST00000480362 WDR17Q8IZU2 1322 aa23.14■■□□□ 1.3
UPF3A-206ENST00000480362 NFE2L2Q16236 605 aa23.14■■□□□ 1.29
UPF3A-206ENST00000480362 NCBP3Q53F19 620 aaKnown RBP23.14■■□□□ 1.29
UPF3A-206ENST00000480362 STRN4Q9NRL3 753 aa23.14■■□□□ 1.29
UPF3A-206ENST00000480362 NCAPD2Q15021 1401 aa23.14■■□□□ 1.29
UPF3A-206ENST00000480362 RIPK4P57078 832 aa23.13■■□□□ 1.29
UPF3A-206ENST00000480362 FAM208AQ9UK61 1670 aaKnown RBP23.13■■□□□ 1.29
UPF3A-206ENST00000480362 TOM1L2Q6ZVM7 507 aa23.12■■□□□ 1.29
UPF3A-206ENST00000480362 CCDC27Q2M243 656 aa23.11■■□□□ 1.29
UPF3A-206ENST00000480362 WWC1Q8IX03 1113 aa23.11■■□□□ 1.29
UPF3A-206ENST00000480362 ZNF521Q96K83 1311 aa23.1■■□□□ 1.29
UPF3A-206ENST00000480362 LARP1Q6PKG0 1096 aaKnown RBP23.1■■□□□ 1.29
UPF3A-206ENST00000480362 PDE3BQ13370 1112 aa23.09■■□□□ 1.29
UPF3A-206ENST00000480362 MTHFSDQ2M296 383 aaKnown RBP23.09■■□□□ 1.29
UPF3A-206ENST00000480362 PHF23Q9BUL5 403 aaPredicted RBP23.09■■□□□ 1.29
UPF3A-206ENST00000480362 TRIM35Q9UPQ4 493 aa23.09■■□□□ 1.29
UPF3A-206ENST00000480362 CARD10Q9BWT7 1032 aa23.08■■□□□ 1.29
UPF3A-206ENST00000480362 PLCH1Q4KWH8 1693 aa23.07■■□□□ 1.28
UPF3A-206ENST00000480362 GOLGA2Q08379 1002 aa23.06■■□□□ 1.28
UPF3A-206ENST00000480362 GAS2L2Q8NHY3 880 aa23.06■■□□□ 1.28
UPF3A-206ENST00000480362 RAPGEF4Q8WZA2 1011 aa23.06■■□□□ 1.28
UPF3A-206ENST00000480362 CDCA7LQ96GN5 454 aa23.06■■□□□ 1.28
UPF3A-206ENST00000480362 LRP6O75581 1613 aa23.05■■□□□ 1.28
UPF3A-206ENST00000480362 TATP17735 454 aaPredicted RBP23.05■■□□□ 1.28
UPF3A-206ENST00000480362 PLEKHO1Q53GL0 409 aaPredicted RBP23.05■■□□□ 1.28
UPF3A-206ENST00000480362 WDR63Q8IWG1 891 aa23.05■■□□□ 1.28
UPF3A-206ENST00000480362 NGLY1Q96IV0 654 aa23.05■■□□□ 1.28
UPF3A-206ENST00000480362 C8orf37Q96NL8 207 aa23.05■■□□□ 1.28
UPF3A-206ENST00000480362 CRB1P82279 1406 aa23.05■■□□□ 1.28
UPF3A-206ENST00000480362 LMOD3Q0VAK6 560 aa23.03■■□□□ 1.28
UPF3A-206ENST00000480362 AMOTQ4VCS5 1084 aa23.03■■□□□ 1.28
UPF3A-206ENST00000480362 DLG5Q8TDM6 1919 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms