RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 TRPC5Q9UL62 973 aaPredicted RBP11.17□□□□□ -0.62
USP54-212ENST00000480210 LMO7Q8WWI1 1683 aa11.17□□□□□ -0.62
USP54-212ENST00000480210 FLT4P35916 1363 aa11.16□□□□□ -0.62
USP54-212ENST00000480210 MAP3K19Q56UN5 1328 aa11.16□□□□□ -0.62
USP54-212ENST00000480210 SOX12O15370 315 aa11.16□□□□□ -0.62
USP54-212ENST00000480210 POLKQ9UBT6 870 aa11.16□□□□□ -0.62
USP54-212ENST00000480210 FAM208AQ9UK61 1670 aaKnown RBP11.16□□□□□ -0.62
USP54-212ENST00000480210 HOXC9P31274 260 aa11.15□□□□□ -0.62
USP54-212ENST00000480210 CHRNA2Q15822 529 aa11.15□□□□□ -0.62
USP54-212ENST00000480210 VPS72Q15906 364 aa11.15□□□□□ -0.62
USP54-212ENST00000480210 NRAPQ86VF7 1730 aa11.15□□□□□ -0.63
USP54-212ENST00000480210 INSRP06213 1382 aa11.15□□□□□ -0.63
USP54-212ENST00000480210 CAMTA1Q9Y6Y1 1673 aa11.14□□□□□ -0.63
USP54-212ENST00000480210 BCL9LQ86UU0 1499 aa11.14□□□□□ -0.63
USP54-212ENST00000480210 ZBTB7CA1YPR0 619 aa11.14□□□□□ -0.63
USP54-212ENST00000480210 RRS1Q15050 365 aaKnown RBP11.14□□□□□ -0.63
USP54-212ENST00000480210 QTRT2Q9H974 415 aaKnown RBP11.14□□□□□ -0.63
USP54-212ENST00000480210 THRAP3Q9Y2W1 955 aaKnown RBP11.14□□□□□ -0.63
USP54-212ENST00000480210 SMG6Q86US8 1419 aaKnown RBP11.14□□□□□ -0.63
USP54-212ENST00000480210 PARD3Q8TEW0 1356 aa11.14□□□□□ -0.63
USP54-212ENST00000480210 WDR17Q8IZU2 1322 aa11.13□□□□□ -0.63
USP54-212ENST00000480210 CFAP53Q96M91 514 aa11.13□□□□□ -0.63
USP54-212ENST00000480210 COL5A2P05997 1499 aaPredicted RBP11.12□□□□□ -0.63
USP54-212ENST00000480210 ATRNO75882 1429 aa11.12□□□□□ -0.63
USP54-212ENST00000480210 ANP32CO43423 234 aa11.12□□□□□ -0.63
USP54-212ENST00000480210 CSB-PGBD3P0DP91 1061 aa11.12□□□□□ -0.63
USP54-212ENST00000480210 TNNT2P45379 298 aaPredicted RBP11.12□□□□□ -0.63
USP54-212ENST00000480210 MTHFSP49914 203 aa11.12□□□□□ -0.63
USP54-212ENST00000480210 RBM6P78332 1123 aaKnown RBP11.12□□□□□ -0.63
USP54-212ENST00000480210 GJD4Q96KN9 370 aaPredicted RBP11.12□□□□□ -0.63
USP54-212ENST00000480210 CDCA7Q9BWT1 371 aaPredicted RBP11.12□□□□□ -0.63
USP54-212ENST00000480210 AXIN2Q9Y2T1 843 aa11.12□□□□□ -0.63
USP54-212ENST00000480210 CDK12Q9NYV4 1490 aaPredicted RBP11.12□□□□□ -0.63
USP54-212ENST00000480210 ERBB3P21860 1342 aa11.11□□□□□ -0.63
USP54-212ENST00000480210 CRB1P82279 1406 aa11.11□□□□□ -0.63
USP54-212ENST00000480210 PPM1GO15355 546 aaPredicted RBP11.11□□□□□ -0.63
USP54-212ENST00000480210 FBLN1P23142 703 aa11.11□□□□□ -0.63
USP54-212ENST00000480210 RXRBP28702 533 aa11.11□□□□□ -0.63
USP54-212ENST00000480210 PPP2R1AP30153 589 aa11.11□□□□□ -0.63
USP54-212ENST00000480210 TOM1L2Q6ZVM7 507 aa11.11□□□□□ -0.63
USP54-212ENST00000480210 ANKRD24Q8TF21 1146 aa11.11□□□□□ -0.63
USP54-212ENST00000480210 CARD10Q9BWT7 1032 aa11.11□□□□□ -0.63
USP54-212ENST00000480210 PRKRIP1Q9H875 184 aaPredicted RBP11.11□□□□□ -0.63
USP54-212ENST00000480210 STRN4Q9NRL3 753 aa11.11□□□□□ -0.63
USP54-212ENST00000480210 EMILIN1Q9Y6C2 1016 aa11.11□□□□□ -0.63
USP54-212ENST00000480210 SPATA31A5Q5VU36 1347 aa11.1□□□□□ -0.63
USP54-212ENST00000480210 SPATA31A7Q8IWB4 1347 aa11.1□□□□□ -0.63
USP54-212ENST00000480210 MYBBP1AQ9BQG0 1328 aaKnown RBP11.1□□□□□ -0.63
USP54-212ENST00000480210 PEAK1Q9H792 1746 aa11.1□□□□□ -0.63
USP54-212ENST00000480210 HSP90AB2PQ58FF8 381 aa11.1□□□□□ -0.63
USP54-212ENST00000480210 BARGINQ6ZT62 677 aa11.1□□□□□ -0.63
USP54-212ENST00000480210 RGS17Q9UGC6 210 aaPredicted RBP11.1□□□□□ -0.63
USP54-212ENST00000480210 SPATA31A1Q5TZJ5 1347 aa11.09□□□□□ -0.63
USP54-212ENST00000480210 ONECUT3O60422 494 aaPredicted RBP11.09□□□□□ -0.63
USP54-212ENST00000480210 TCP11L2Q8N4U5 519 aa11.09□□□□□ -0.63
USP54-212ENST00000480210 NUDCQ9Y266 331 aa11.09□□□□□ -0.63
USP54-212ENST00000480210 CCDC9Q9Y3X0 531 aaKnown RBP11.09□□□□□ -0.63
USP54-212ENST00000480210 PLEKHG2Q9H7P9 1386 aa11.08□□□□□ -0.64
USP54-212ENST00000480210 DIAPH1O60610 1272 aaKnown RBP11.08□□□□□ -0.64
USP54-212ENST00000480210 CENPBP07199 599 aaPredicted RBP11.08□□□□□ -0.64
USP54-212ENST00000480210 LARP1Q6PKG0 1096 aaKnown RBP11.08□□□□□ -0.64
USP54-212ENST00000480210 NLRP2Q9NX02 1062 aa11.08□□□□□ -0.64
USP54-212ENST00000480210 RGPD2P0DJD1 1756 aa11.08□□□□□ -0.64
USP54-212ENST00000480210 CNGB1Q14028 1251 aaPredicted RBP11.07□□□□□ -0.64
USP54-212ENST00000480210 IL13P35225 146 aa11.06□□□□□ -0.64
USP54-212ENST00000480210 EIF4A2Q14240 407 aaKnown RBP11.06□□□□□ -0.64
USP54-212ENST00000480210 POTEAQ6S8J7 498 aa11.06□□□□□ -0.64
USP54-212ENST00000480210 LTV1Q96GA3 475 aaPredicted RBP11.06□□□□□ -0.64
USP54-212ENST00000480210 PNNQ9H307 717 aaKnown RBP11.06□□□□□ -0.64
USP54-212ENST00000480210 WNK3Q9BYP7 1800 aa11.05□□□□□ -0.64
USP54-212ENST00000480210 GLI3P10071 1580 aa11.05□□□□□ -0.64
USP54-212ENST00000480210 NCAPD2Q15021 1401 aa11.04□□□□□ -0.64
USP54-212ENST00000480210 IL2RBP14784 551 aa11.04□□□□□ -0.64
USP54-212ENST00000480210 NBPF6Q5VWK0 638 aa11.04□□□□□ -0.64
USP54-212ENST00000480210 DIEXFQ68CQ4 756 aaKnown RBP11.04□□□□□ -0.64
USP54-212ENST00000480210 RAPGEF4Q8WZA2 1011 aa11.04□□□□□ -0.64
USP54-212ENST00000480210 NBPF4Q96M43 638 aa11.04□□□□□ -0.64
USP54-212ENST00000480210 EYA1Q99502 592 aa11.04□□□□□ -0.64
USP54-212ENST00000480210 IGSF1Q8N6C5 1336 aa11.04□□□□□ -0.64
USP54-212ENST00000480210 PARP4Q9UKK3 1724 aaKnown RBP11.04□□□□□ -0.64
USP54-212ENST00000480210 EXOC5O00471 708 aa11.03□□□□□ -0.64
USP54-212ENST00000480210 TATP17735 454 aaPredicted RBP11.03□□□□□ -0.64
USP54-212ENST00000480210 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.03□□□□□ -0.64
USP54-212ENST00000480210 USP35Q9P2H5 1018 aa11.03□□□□□ -0.64
USP54-212ENST00000480210 KAT6BQ8WYB5 2073 aa11.03□□□□□ -0.64
USP54-212ENST00000480210 RGPD1P0DJD0 1748 aa11.03□□□□□ -0.64
USP54-212ENST00000480210 COL3A1P02461 1466 aaPredicted RBP11.02□□□□□ -0.65
USP54-212ENST00000480210 FAM98CQ17RN3 349 aaKnown RBP11.02□□□□□ -0.65
USP54-212ENST00000480210 AMOTQ4VCS5 1084 aa11.02□□□□□ -0.65
USP54-212ENST00000480210 THSD7AQ9UPZ6 1657 aa11.01□□□□□ -0.65
USP54-212ENST00000480210 FCHSD2O94868 740 aa11.01□□□□□ -0.65
USP54-212ENST00000480210 NEFMP07197 916 aa11.01□□□□□ -0.65
USP54-212ENST00000480210 DDB1Q16531 1140 aa11.01□□□□□ -0.65
USP54-212ENST00000480210 SEPT12Q8IYM1 358 aa11.01□□□□□ -0.65
USP54-212ENST00000480210 KDRP35968 1356 aa11.01□□□□□ -0.65
USP54-212ENST00000480210 DISP2A7MBM2 1401 aa11.01□□□□□ -0.65
USP54-212ENST00000480210 BRWD3Q6RI45 1802 aa11□□□□□ -0.65
USP54-212ENST00000480210 CCER2I3L3R5 266 aa11□□□□□ -0.65
USP54-212ENST00000480210 U2SURPO15042 1029 aaKnown RBP11□□□□□ -0.65
USP54-212ENST00000480210 PDE3BQ13370 1112 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms