RNA–Protein interactions for RNA: ENST00000479197.1

RFK-204, Transcript of riboflavin kinase, human

TSL 1 (best)

Gene RFK, Length 1,501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFK-204	ENST00000479197	NPC1L1	Q9UHC9	1359 aa		24.58	■■□□□ 1.53
RFK-204	ENST00000479197	ZNF316	A6NFI3	1004 aa	Predicted RBP	24.58	■■□□□ 1.53
RFK-204	ENST00000479197	MAP2	P11137	1827 aa	Known RBP	24.58	■■□□□ 1.53
RFK-204	ENST00000479197	VPS72	Q15906	364 aa		24.57	■■□□□ 1.52
RFK-204	ENST00000479197	STRN4	Q9NRL3	753 aa		24.57	■■□□□ 1.52
RFK-204	ENST00000479197	AXIN2	Q9Y2T1	843 aa		24.57	■■□□□ 1.52
RFK-204	ENST00000479197	RRS1	Q15050	365 aa	Known RBP	24.56	■■□□□ 1.52
RFK-204	ENST00000479197	MORC1	Q86VD1	984 aa		24.56	■■□□□ 1.52
RFK-204	ENST00000479197	EVA1C	P58658	441 aa		24.56	■■□□□ 1.52
RFK-204	ENST00000479197	DDX10	Q13206	875 aa	Known RBP	24.56	■■□□□ 1.52
RFK-204	ENST00000479197	CC2D1B	Q5T0F9	858 aa	Known RBP	24.56	■■□□□ 1.52
RFK-204	ENST00000479197	RTL1	A6NKG5	1358 aa		24.55	■■□□□ 1.52
RFK-204	ENST00000479197	BLM	P54132	1417 aa	Predicted RBP	24.54	■■□□□ 1.52
RFK-204	ENST00000479197	PEAK1	Q9H792	1746 aa		24.54	■■□□□ 1.52
RFK-204	ENST00000479197	RXRB	P28702	533 aa		24.54	■■□□□ 1.52
RFK-204	ENST00000479197	TNNT2	P45379	298 aa	Predicted RBP	24.54	■■□□□ 1.52
RFK-204	ENST00000479197	AMPH	P49418	695 aa		24.54	■■□□□ 1.52
RFK-204	ENST00000479197	RBM6	P78332	1123 aa	Known RBP	24.54	■■□□□ 1.52
RFK-204	ENST00000479197	IP6K1	Q92551	441 aa		24.54	■■□□□ 1.52
RFK-204	ENST00000479197	GJD4	Q96KN9	370 aa	Predicted RBP	24.54	■■□□□ 1.52
RFK-204	ENST00000479197	CCDC9	Q9Y3X0	531 aa	Known RBP	24.53	■■□□□ 1.52
RFK-204	ENST00000479197	GLI3	P10071	1580 aa		24.53	■■□□□ 1.52
RFK-204	ENST00000479197	HOXC9	P31274	260 aa		24.52	■■□□□ 1.52
RFK-204	ENST00000479197	KIF24	Q5T7B8	1368 aa		24.52	■■□□□ 1.52
RFK-204	ENST00000479197	FLT4	P35916	1363 aa		24.51	■■□□□ 1.51
RFK-204	ENST00000479197	SPATA31A5	Q5VU36	1347 aa		24.51	■■□□□ 1.51
RFK-204	ENST00000479197	SPATA31A7	Q8IWB4	1347 aa		24.51	■■□□□ 1.51
RFK-204	ENST00000479197	LARP1	Q6PKG0	1096 aa	Known RBP	24.51	■■□□□ 1.51
RFK-204	ENST00000479197	EMILIN1	Q9Y6C2	1016 aa		24.51	■■□□□ 1.51
RFK-204	ENST00000479197	WDR17	Q8IZU2	1322 aa		24.5	■■□□□ 1.51
RFK-204	ENST00000479197	CNGB1	Q14028	1251 aa	Predicted RBP	24.5	■■□□□ 1.51
RFK-204	ENST00000479197	ERBB3	P21860	1342 aa		24.49	■■□□□ 1.51
RFK-204	ENST00000479197	POLK	Q9UBT6	870 aa		24.49	■■□□□ 1.51
RFK-204	ENST00000479197	CRB1	P82279	1406 aa		24.48	■■□□□ 1.51
RFK-204	ENST00000479197	FAM208A	Q9UK61	1670 aa	Known RBP	24.48	■■□□□ 1.51
RFK-204	ENST00000479197	SPATA31A1	Q5TZJ5	1347 aa		24.47	■■□□□ 1.51
RFK-204	ENST00000479197	CSB-PGBD3	P0DP91	1061 aa		24.47	■■□□□ 1.51
RFK-204	ENST00000479197	CDK12	Q9NYV4	1490 aa	Predicted RBP	24.47	■■□□□ 1.51
RFK-204	ENST00000479197	SMG6	Q86US8	1419 aa	Known RBP	24.47	■■□□□ 1.51
RFK-204	ENST00000479197	PPM1G	O15355	546 aa	Predicted RBP	24.46	■■□□□ 1.51
RFK-204	ENST00000479197	ANKRD24	Q8TF21	1146 aa		24.46	■■□□□ 1.51
RFK-204	ENST00000479197	TOM1L2	Q6ZVM7	507 aa		24.45	■■□□□ 1.51
RFK-204	ENST00000479197	INSR	P06213	1382 aa		24.45	■■□□□ 1.5
RFK-204	ENST00000479197	HSP90AB2P	Q58FF8	381 aa		24.45	■■□□□ 1.5
RFK-204	ENST00000479197	USP35	Q9P2H5	1018 aa		24.44	■■□□□ 1.5
RFK-204	ENST00000479197	RGS12	O14924	1447 aa		24.43	■■□□□ 1.5
RFK-204	ENST00000479197	ILDR2	Q71H61	639 aa		24.43	■■□□□ 1.5
RFK-204	ENST00000479197	LTV1	Q96GA3	475 aa	Predicted RBP	24.43	■■□□□ 1.5
RFK-204	ENST00000479197	TCP11L2	Q8N4U5	519 aa		24.41	■■□□□ 1.5
RFK-204	ENST00000479197	CARD10	Q9BWT7	1032 aa		24.41	■■□□□ 1.5
RFK-204	ENST00000479197	RGPD2	P0DJD1	1756 aa		24.41	■■□□□ 1.5
RFK-204	ENST00000479197	FAM98C	Q17RN3	349 aa	Known RBP	24.4	■■□□□ 1.5
RFK-204	ENST00000479197	THRAP3	Q9Y2W1	955 aa	Known RBP	24.4	■■□□□ 1.5
RFK-204	ENST00000479197	WNK3	Q9BYP7	1800 aa		24.4	■■□□□ 1.5
RFK-204	ENST00000479197	ONECUT3	O60422	494 aa	Predicted RBP	24.4	■■□□□ 1.5
RFK-204	ENST00000479197	NLRP2	Q9NX02	1062 aa		24.4	■■□□□ 1.5
RFK-204	ENST00000479197	THSD7A	Q9UPZ6	1657 aa		24.39	■■□□□ 1.5
RFK-204	ENST00000479197	BARGIN	Q6ZT62	677 aa		24.39	■■□□□ 1.49
RFK-204	ENST00000479197	PARD3	Q8TEW0	1356 aa		24.37	■■□□□ 1.49
RFK-204	ENST00000479197	MTHFS	P49914	203 aa		24.36	■■□□□ 1.49
RFK-204	ENST00000479197	BRWD3	Q6RI45	1802 aa		24.36	■■□□□ 1.49
RFK-204	ENST00000479197		A0A0G2JS52	829 aa		24.35	■■□□□ 1.49
RFK-204	ENST00000479197	MYT1	Q01538	1121 aa		24.35	■■□□□ 1.49
RFK-204	ENST00000479197	SEPT12	Q8IYM1	358 aa		24.35	■■□□□ 1.49
RFK-204	ENST00000479197	PARP4	Q9UKK3	1724 aa	Known RBP	24.34	■■□□□ 1.49
RFK-204	ENST00000479197	PPP2R1A	P30153	589 aa		24.32	■■□□□ 1.48
RFK-204	ENST00000479197	EIF4A2	Q14240	407 aa	Known RBP	24.32	■■□□□ 1.48
RFK-204	ENST00000479197	NBPF6	Q5VWK0	638 aa		24.32	■■□□□ 1.48
RFK-204	ENST00000479197	NBPF4	Q96M43	638 aa		24.32	■■□□□ 1.48
RFK-204	ENST00000479197	RALBP1	Q15311	655 aa		24.31	■■□□□ 1.48
RFK-204	ENST00000479197	DISP2	A7MBM2	1401 aa		24.31	■■□□□ 1.48
RFK-204	ENST00000479197	CDCA7	Q9BWT1	371 aa	Predicted RBP	24.3	■■□□□ 1.48
RFK-204	ENST00000479197	LRRC37A3	O60309	1634 aa		24.3	■■□□□ 1.48
RFK-204	ENST00000479197	USHBP1	Q8N6Y0	703 aa		24.28	■■□□□ 1.48
RFK-204	ENST00000479197	NCAPD2	Q15021	1401 aa		24.27	■■□□□ 1.48
RFK-204	ENST00000479197	IL2RB	P14784	551 aa		24.27	■■□□□ 1.48
RFK-204	ENST00000479197	EYA1	Q99502	592 aa		24.27	■■□□□ 1.48
RFK-204	ENST00000479197	COL3A1	P02461	1466 aa	Predicted RBP	24.27	■■□□□ 1.48
RFK-204	ENST00000479197	RGPD1	P0DJD0	1748 aa		24.26	■■□□□ 1.47
RFK-204	ENST00000479197	IL13	P35225	146 aa		24.25	■■□□□ 1.47
RFK-204	ENST00000479197	EP400	Q96L91	3159 aa		24.25	■■□□□ 1.47
RFK-204	ENST00000479197	KRT27	Q7Z3Y8	459 aa		24.25	■■□□□ 1.47
RFK-204	ENST00000479197	CFAP53	Q96M91	514 aa		24.25	■■□□□ 1.47
RFK-204	ENST00000479197	IGSF1	Q8N6C5	1336 aa		24.24	■■□□□ 1.47
RFK-204	ENST00000479197	DDB1	Q16531	1140 aa		24.24	■■□□□ 1.47
RFK-204	ENST00000479197	PRKRIP1	Q9H875	184 aa	Predicted RBP	24.24	■■□□□ 1.47
RFK-204	ENST00000479197	MEGF6	O75095	1541 aa		24.23	■■□□□ 1.47
RFK-204	ENST00000479197	DIAPH1	O60610	1272 aa	Known RBP	24.23	■■□□□ 1.47
RFK-204	ENST00000479197	TNS2	Q63HR2	1409 aa		24.22	■■□□□ 1.47
RFK-204	ENST00000479197	MYBBP1A	Q9BQG0	1328 aa	Known RBP	24.22	■■□□□ 1.47
RFK-204	ENST00000479197	PDE3B	Q13370	1112 aa		24.21	■■□□□ 1.47
RFK-204	ENST00000479197	RAPGEF4	Q8WZA2	1011 aa		24.21	■■□□□ 1.47
RFK-204	ENST00000479197	OVOS2	A0A0G2JMS6	1433 aa		24.2	■■□□□ 1.46
RFK-204	ENST00000479197	EXOC5	O00471	708 aa		24.2	■■□□□ 1.46
RFK-204	ENST00000479197	TAT	P17735	454 aa	Predicted RBP	24.18	■■□□□ 1.46
RFK-204	ENST00000479197	SHANK3	Q9BYB0	1731 aa		24.17	■■□□□ 1.46
RFK-204	ENST00000479197	PKD1L3	Q7Z443	1732 aa		24.16	■■□□□ 1.46
RFK-204	ENST00000479197	KDR	P35968	1356 aa		24.16	■■□□□ 1.46
RFK-204	ENST00000479197	SULT6B1	Q6IMI4	303 aa		24.15	■■□□□ 1.46
RFK-204	ENST00000479197	FAM182B	Q5T319	152 aa		24.15	■■□□□ 1.46

Retrieved 100 of 20,778 RNA–protein pairs in 145.1 ms