RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 PADI6Q6TGC4 694 aa9.66□□□□□ -0.86
USP48-208ENST00000479177 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.66□□□□□ -0.86
USP48-208ENST00000479177 PACS2Q86VP3 889 aa9.66□□□□□ -0.86
USP48-208ENST00000479177 SIN3AQ96ST3 1273 aa9.66□□□□□ -0.86
USP48-208ENST00000479177 CLTCL1P53675 1640 aa9.65□□□□□ -0.86
USP48-208ENST00000479177 MROH2AA6NES4 1674 aa9.64□□□□□ -0.87
USP48-208ENST00000479177 WASHC2CQ9Y4E1 1318 aa9.64□□□□□ -0.87
USP48-208ENST00000479177 FECHP22830 423 aa9.64□□□□□ -0.87
USP48-208ENST00000479177 FER1L4A9Z1Z3 1794 aa9.64□□□□□ -0.87
USP48-208ENST00000479177 PREX1Q8TCU6 1659 aa9.64□□□□□ -0.87
USP48-208ENST00000479177 CCDC144AA2RUR9 1427 aa9.64□□□□□ -0.87
USP48-208ENST00000479177 SYNMO15061 1565 aa9.63□□□□□ -0.87
USP48-208ENST00000479177 FAM161AQ3B820 660 aa9.63□□□□□ -0.87
USP48-208ENST00000479177 GPIHBP1Q8IV16 184 aa9.63□□□□□ -0.87
USP48-208ENST00000479177 CERKQ8TCT0 537 aa9.63□□□□□ -0.87
USP48-208ENST00000479177 NOS1P29475 1434 aa9.63□□□□□ -0.87
USP48-208ENST00000479177 CNTLNQ9NXG0 1405 aa9.63□□□□□ -0.87
USP48-208ENST00000479177 PIK3C2BO00750 1634 aa9.63□□□□□ -0.87
USP48-208ENST00000479177 ERVK-7P63135 1459 aa9.62□□□□□ -0.87
USP48-208ENST00000479177 NEUROD1Q13562 356 aa9.62□□□□□ -0.87
USP48-208ENST00000479177 LMOD2Q6P5Q4 547 aa9.62□□□□□ -0.87
USP48-208ENST00000479177 NKX2-3Q8TAU0 364 aa9.62□□□□□ -0.87
USP48-208ENST00000479177 V9GY48 417 aaPredicted RBP9.62□□□□□ -0.87
USP48-208ENST00000479177 CFAP65Q6ZU64 1925 aaKnown RBP9.62□□□□□ -0.87
USP48-208ENST00000479177 UGGT1Q9NYU2 1555 aa9.62□□□□□ -0.87
USP48-208ENST00000479177 TONSLQ96HA7 1378 aa9.62□□□□□ -0.87
USP48-208ENST00000479177 ARID4BQ4LE39 1312 aaPredicted RBP9.61□□□□□ -0.87
USP48-208ENST00000479177 FCHSD2O94868 740 aa9.61□□□□□ -0.87
USP48-208ENST00000479177 MLECQ14165 292 aa9.61□□□□□ -0.87
USP48-208ENST00000479177 ZNF787Q6DD87 383 aa9.61□□□□□ -0.87
USP48-208ENST00000479177 TTC13Q8NBP0 860 aa9.61□□□□□ -0.87
USP48-208ENST00000479177 IL21Q9HBE4 155 aa9.61□□□□□ -0.87
USP48-208ENST00000479177 TIMELESSQ9UNS1 1208 aa9.61□□□□□ -0.87
USP48-208ENST00000479177 SPATA31D1Q6ZQQ2 1576 aa9.61□□□□□ -0.87
USP48-208ENST00000479177 NEURL4Q96JN8 1562 aa9.61□□□□□ -0.87
USP48-208ENST00000479177 ADAMTSL3P82987 1691 aa9.61□□□□□ -0.87
USP48-208ENST00000479177 MADDQ8WXG6 1647 aa9.6□□□□□ -0.87
USP48-208ENST00000479177 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.6□□□□□ -0.87
USP48-208ENST00000479177 SPATA31E1Q6ZUB1 1445 aa9.59□□□□□ -0.87
USP48-208ENST00000479177 TULP1O00294 542 aaPredicted RBP9.59□□□□□ -0.87
USP48-208ENST00000479177 ADGRB3O60242 1522 aa9.59□□□□□ -0.87
USP48-208ENST00000479177 KIF1BO60333 1816 aa9.59□□□□□ -0.88
USP48-208ENST00000479177 C3P01024 1663 aa9.58□□□□□ -0.88
USP48-208ENST00000479177 APLP1P51693 650 aa9.58□□□□□ -0.88
USP48-208ENST00000479177 NUDT18Q6ZVK8 323 aa9.58□□□□□ -0.88
USP48-208ENST00000479177 TATDN2Q93075 761 aa9.58□□□□□ -0.88
USP48-208ENST00000479177 ZNF775Q96BV0 537 aaPredicted RBP9.58□□□□□ -0.88
USP48-208ENST00000479177 RBM27Q9P2N5 1060 aaKnown RBP9.58□□□□□ -0.88
USP48-208ENST00000479177 PNMA3Q9UL41 463 aa9.58□□□□□ -0.88
USP48-208ENST00000479177 PDZRN3Q9UPQ7 1066 aa9.58□□□□□ -0.88
USP48-208ENST00000479177 RIMS1Q86UR5 1692 aaKnown RBP9.58□□□□□ -0.88
USP48-208ENST00000479177 BCANQ96GW7 911 aa9.57□□□□□ -0.88
USP48-208ENST00000479177 IFT172Q9UG01 1749 aa9.56□□□□□ -0.88
USP48-208ENST00000479177 ZMYM3Q14202 1370 aa9.56□□□□□ -0.88
USP48-208ENST00000479177 GNPATO15228 680 aa9.56□□□□□ -0.88
USP48-208ENST00000479177 HIC1Q14526 733 aa9.56□□□□□ -0.88
USP48-208ENST00000479177 L3MBTL2Q969R5 705 aa9.55□□□□□ -0.88
USP48-208ENST00000479177 ESF1Q9H501 851 aaKnown RBP9.55□□□□□ -0.88
USP48-208ENST00000479177 MYO5BQ9ULV0 1848 aa9.54□□□□□ -0.88
USP48-208ENST00000479177 TMEM131LA2VDJ0 1609 aa9.54□□□□□ -0.88
USP48-208ENST00000479177 NBPF26B4DH59 902 aa9.54□□□□□ -0.88
USP48-208ENST00000479177 PPP1R15AO75807 674 aaPredicted RBP9.54□□□□□ -0.88
USP48-208ENST00000479177 FBXO31Q5XUX0 539 aaPredicted RBP9.54□□□□□ -0.88
USP48-208ENST00000479177 ADGRG1Q9Y653 693 aa9.54□□□□□ -0.88
USP48-208ENST00000479177 UHRF1BP1Q6BDS2 1440 aa9.54□□□□□ -0.88
USP48-208ENST00000479177 TNRQ92752 1358 aa9.53□□□□□ -0.88
USP48-208ENST00000479177 PPLO60437 1756 aa9.53□□□□□ -0.88
USP48-208ENST00000479177 RNF40O75150 1001 aa9.53□□□□□ -0.88
USP48-208ENST00000479177 EYA1Q99502 592 aa9.53□□□□□ -0.88
USP48-208ENST00000479177 MYOM2P54296 1465 aa9.53□□□□□ -0.88
USP48-208ENST00000479177 KDM5AP29375 1690 aaKnown RBP9.52□□□□□ -0.89
USP48-208ENST00000479177 ZC3H15Q8WU90 426 aaKnown RBP9.52□□□□□ -0.89
USP48-208ENST00000479177 SLC52A1Q9NWF4 448 aa9.52□□□□□ -0.89
USP48-208ENST00000479177 MYO3AQ8NEV4 1616 aa9.52□□□□□ -0.89
USP48-208ENST00000479177 NEXMIFQ5QGS0 1516 aa9.51□□□□□ -0.89
USP48-208ENST00000479177 PRAG1Q86YV5 1406 aa9.51□□□□□ -0.89
USP48-208ENST00000479177 COPS2P61201 443 aa9.51□□□□□ -0.89
USP48-208ENST00000479177 RALGAPBQ86X10 1494 aa9.51□□□□□ -0.89
USP48-208ENST00000479177 NLRP1Q9C000 1473 aa9.51□□□□□ -0.89
USP48-208ENST00000479177 TRPM1Q7Z4N2 1603 aa9.5□□□□□ -0.89
USP48-208ENST00000479177 IDI1Q13907 227 aa9.5□□□□□ -0.89
USP48-208ENST00000479177 TRIM67Q6ZTA4 783 aa9.5□□□□□ -0.89
USP48-208ENST00000479177 NLRP7Q8WX94 980 aa9.5□□□□□ -0.89
USP48-208ENST00000479177 A2ML1A8K2U0 1454 aa9.5□□□□□ -0.89
USP48-208ENST00000479177 NRXN1Q9ULB1 1477 aa9.5□□□□□ -0.89
USP48-208ENST00000479177 UBR1Q8IWV7 1749 aa9.5□□□□□ -0.89
USP48-208ENST00000479177 ZNF142P52746 1687 aaPredicted RBP9.49□□□□□ -0.89
USP48-208ENST00000479177 NBPF8Q3BBV2 869 aa9.49□□□□□ -0.89
USP48-208ENST00000479177 RGL3Q3MIN7 710 aa9.49□□□□□ -0.89
USP48-208ENST00000479177 EMID1Q96A84 441 aaPredicted RBP9.49□□□□□ -0.89
USP48-208ENST00000479177 PHOX2BQ99453 314 aa9.49□□□□□ -0.89
USP48-208ENST00000479177 PTPRMP28827 1452 aa9.48□□□□□ -0.89
USP48-208ENST00000479177 CEBPAP49715 358 aaPredicted RBP9.48□□□□□ -0.89
USP48-208ENST00000479177 DCAF11Q8TEB1 546 aa9.48□□□□□ -0.89
USP48-208ENST00000479177 LAMC1P11047 1609 aa9.48□□□□□ -0.89
USP48-208ENST00000479177 KIAA1210Q9ULL0 1709 aa9.48□□□□□ -0.89
USP48-208ENST00000479177 CEP170BQ9Y4F5 1589 aaPredicted RBP9.47□□□□□ -0.89
USP48-208ENST00000479177 POTECB2RU33 542 aa9.47□□□□□ -0.89
USP48-208ENST00000479177 METTL3Q86U44 580 aaKnown RBP9.47□□□□□ -0.89
USP48-208ENST00000479177 RPGRIP1LQ68CZ1 1315 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms