RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 SART3Q15020 963 aaKnown RBP10.49□□□□□ -0.73
SYNE1-224ENST00000478916 ENOX2Q16206 610 aaKnown RBP10.49□□□□□ -0.73
SYNE1-224ENST00000478916 TOP2BQ02880 1626 aa10.49□□□□□ -0.73
SYNE1-224ENST00000478916 CNTROBQ8N137 903 aa10.49□□□□□ -0.73
SYNE1-224ENST00000478916 SYNJ1O43426 1573 aa10.49□□□□□ -0.73
SYNE1-224ENST00000478916 ERC1Q8IUD2 1116 aa10.49□□□□□ -0.73
SYNE1-224ENST00000478916 KIAA1107Q9UPP5 1409 aa10.49□□□□□ -0.73
SYNE1-224ENST00000478916 FOSBP53539 338 aa10.48□□□□□ -0.73
SYNE1-224ENST00000478916 MAGEC2Q9UBF1 373 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-224ENST00000478916 KINO60870 393 aaKnown RBP10.48□□□□□ -0.73
SYNE1-224ENST00000478916 PRKAR2BP31323 418 aa10.48□□□□□ -0.73
SYNE1-224ENST00000478916 ERBINQ96RT1 1412 aa10.48□□□□□ -0.73
SYNE1-224ENST00000478916 CLASRPQ8N2M8 674 aaKnown RBP10.48□□□□□ -0.73
SYNE1-224ENST00000478916 IL27Q8NEV9 243 aa10.48□□□□□ -0.73
SYNE1-224ENST00000478916 CENPHQ9H3R5 247 aa10.48□□□□□ -0.73
SYNE1-224ENST00000478916 SUPT6HQ7KZ85 1726 aaKnown RBP10.48□□□□□ -0.73
SYNE1-224ENST00000478916 PSMA5P28066 241 aa10.48□□□□□ -0.73
SYNE1-224ENST00000478916 IKQ13123 557 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-224ENST00000478916 PRDM11Q9NQV5 511 aa10.48□□□□□ -0.73
SYNE1-224ENST00000478916 FAM177BA6PVY3 158 aa10.47□□□□□ -0.73
SYNE1-224ENST00000478916 RAPGEF3O95398 923 aa10.47□□□□□ -0.73
SYNE1-224ENST00000478916 PPP1R1BQ9UD71 204 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-224ENST00000478916 HIP1O00291 1037 aa10.47□□□□□ -0.73
SYNE1-224ENST00000478916 FSD1Q9BTV5 496 aa10.47□□□□□ -0.73
SYNE1-224ENST00000478916 EZRP15311 586 aaKnown RBP10.47□□□□□ -0.73
SYNE1-224ENST00000478916 PIP4K2BP78356 416 aa10.47□□□□□ -0.73
SYNE1-224ENST00000478916 ANKRD30BQ9BXX2 1392 aa10.47□□□□□ -0.73
SYNE1-224ENST00000478916 ANKRD62A6NC57 917 aa10.47□□□□□ -0.73
SYNE1-224ENST00000478916 PDCL2Q8N4E4 241 aa10.47□□□□□ -0.73
SYNE1-224ENST00000478916 SPC24Q8NBT2 197 aa10.47□□□□□ -0.73
SYNE1-224ENST00000478916 ATAD2Q6PL18 1390 aa10.46□□□□□ -0.73
SYNE1-224ENST00000478916 ERICH4A6NGS2 130 aa10.46□□□□□ -0.73
SYNE1-224ENST00000478916 CCAR1Q8IX12 1150 aaKnown RBP10.46□□□□□ -0.73
SYNE1-224ENST00000478916 CNNM1Q9NRU3 951 aa10.46□□□□□ -0.73
SYNE1-224ENST00000478916 ZNHIT6Q9NWK9 470 aaKnown RBP10.46□□□□□ -0.73
SYNE1-224ENST00000478916 PIP4K2AP48426 406 aaPredicted RBP10.46□□□□□ -0.73
SYNE1-224ENST00000478916 TXLNBQ8N3L3 684 aa10.46□□□□□ -0.73
SYNE1-224ENST00000478916 CCDC181Q5TID7 509 aa10.46□□□□□ -0.74
SYNE1-224ENST00000478916 LUC7LQ9NQ29 371 aaKnown RBP10.46□□□□□ -0.74
SYNE1-224ENST00000478916 ZNF530Q6P9A1 599 aaPredicted RBP10.46□□□□□ -0.74
SYNE1-224ENST00000478916 DDX54Q8TDD1 881 aaKnown RBP10.46□□□□□ -0.74
SYNE1-224ENST00000478916 CABP1Q9NZU7 370 aa10.46□□□□□ -0.74
SYNE1-224ENST00000478916 EPRSP07814 1512 aaKnown RBP10.46□□□□□ -0.74
SYNE1-224ENST00000478916 KIAA0586Q9BVV6 1533 aa10.46□□□□□ -0.74
SYNE1-224ENST00000478916 IQCEQ6IPM2 695 aa10.45□□□□□ -0.74
SYNE1-224ENST00000478916 CDC45O75419 566 aa10.45□□□□□ -0.74
SYNE1-224ENST00000478916 LRRCC1Q9C099 1032 aa10.45□□□□□ -0.74
SYNE1-224ENST00000478916 CCDC158Q5M9N0 1113 aa10.45□□□□□ -0.74
SYNE1-224ENST00000478916 TCP11L2Q8N4U5 519 aa10.45□□□□□ -0.74
SYNE1-224ENST00000478916 ARAP1Q96P48 1450 aa10.45□□□□□ -0.74
SYNE1-224ENST00000478916 TTC39AQ5SRH9 613 aa10.45□□□□□ -0.74
SYNE1-224ENST00000478916 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.45□□□□□ -0.74
SYNE1-224ENST00000478916 MCM2P49736 904 aa10.45□□□□□ -0.74
SYNE1-224ENST00000478916 SYCP1Q15431 976 aa10.44□□□□□ -0.74
SYNE1-224ENST00000478916 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.44□□□□□ -0.74
SYNE1-224ENST00000478916 PPP2R1AP30153 589 aa10.44□□□□□ -0.74
SYNE1-224ENST00000478916 TWISTNBQ3B726 338 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-224ENST00000478916 LNPKQ9C0E8 428 aa10.44□□□□□ -0.74
SYNE1-224ENST00000478916 LAMC3Q9Y6N6 1575 aa10.44□□□□□ -0.74
SYNE1-224ENST00000478916 PRPF40AO75400 957 aaKnown RBP10.44□□□□□ -0.74
SYNE1-224ENST00000478916 SURF6O75683 361 aaKnown RBP10.44□□□□□ -0.74
SYNE1-224ENST00000478916 HDGFL1Q5TGJ6 251 aa10.44□□□□□ -0.74
SYNE1-224ENST00000478916 SLC26A8Q96RN1 970 aa10.44□□□□□ -0.74
SYNE1-224ENST00000478916 DNAJC2Q99543 621 aaKnown RBP10.44□□□□□ -0.74
SYNE1-224ENST00000478916 PDCP20941 246 aa10.44□□□□□ -0.74
SYNE1-224ENST00000478916 CCDC192P0DO97 292 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 DAPK1P53355 1430 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 MAPK8IP2Q13387 824 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-224ENST00000478916 SULT6B1Q6IMI4 303 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 TAX1BP1Q86VP1 789 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 PPFIBP1Q86W92 1011 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 GRPEL1Q9HAV7 217 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 GNAI2P04899 355 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 BRPF1P55201 1214 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-224ENST00000478916 DHX37Q8IY37 1157 aaKnown RBP10.43□□□□□ -0.74
SYNE1-224ENST00000478916 SERPINC1P01008 464 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 ZNF396Q96N95 335 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-224ENST00000478916 IQGAP2Q13576 1575 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 CD109Q6YHK3 1445 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 KCNH5Q8NCM2 988 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 ADAMTS8Q9UP79 889 aa10.43□□□□□ -0.74
SYNE1-224ENST00000478916 GBP2P32456 591 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-224ENST00000478916 CCT4P50991 539 aaKnown RBP10.42□□□□□ -0.74
SYNE1-224ENST00000478916 CALCOCO1Q9P1Z2 691 aa10.42□□□□□ -0.74
SYNE1-224ENST00000478916 FAM193AP78312 1265 aa10.42□□□□□ -0.74
SYNE1-224ENST00000478916 CCDC102AQ96A19 550 aa10.42□□□□□ -0.74
SYNE1-224ENST00000478916 FMNL2Q96PY5 1086 aa10.42□□□□□ -0.74
SYNE1-224ENST00000478916 TXLNAP40222 546 aa10.42□□□□□ -0.74
SYNE1-224ENST00000478916 DACH1Q9UI36 760 aa10.42□□□□□ -0.74
SYNE1-224ENST00000478916 SHTN1A0MZ66 631 aa10.41□□□□□ -0.74
SYNE1-224ENST00000478916 PANK1Q8TE04 598 aa10.41□□□□□ -0.74
SYNE1-224ENST00000478916 DDX11Q96FC9 970 aa10.41□□□□□ -0.74
SYNE1-224ENST00000478916 WWC2Q6AWC2 1192 aa10.41□□□□□ -0.74
SYNE1-224ENST00000478916 CCDC141Q6ZP82 1450 aa10.41□□□□□ -0.74
SYNE1-224ENST00000478916 CBFA2T2O43439 604 aa10.41□□□□□ -0.74
SYNE1-224ENST00000478916 MTMR7Q9Y216 660 aa10.41□□□□□ -0.74
SYNE1-224ENST00000478916 MPHOSPH8Q99549 860 aa10.41□□□□□ -0.74
SYNE1-224ENST00000478916 NACAP1Q9BZK3 213 aa10.41□□□□□ -0.74
SYNE1-224ENST00000478916 KIF14Q15058 1648 aa10.41□□□□□ -0.74
SYNE1-224ENST00000478916 SLC12A5Q9H2X9 1139 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms