RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 RGS12O14924 1447 aa9.49□□□□□ -0.89
BRCA1-215ENST00000478531 RBM6P78332 1123 aaKnown RBP9.49□□□□□ -0.89
BRCA1-215ENST00000478531 COL5A2P05997 1499 aaPredicted RBP9.49□□□□□ -0.89
BRCA1-215ENST00000478531 MAP2P11137 1827 aaKnown RBP9.48□□□□□ -0.89
BRCA1-215ENST00000478531 EVA1CP58658 441 aa9.48□□□□□ -0.89
BRCA1-215ENST00000478531 BRWD3Q6RI45 1802 aa9.48□□□□□ -0.89
BRCA1-215ENST00000478531 FBLN1P23142 703 aa9.48□□□□□ -0.89
BRCA1-215ENST00000478531 VPS72Q15906 364 aa9.48□□□□□ -0.89
BRCA1-215ENST00000478531 ARHGEF25Q86VW2 580 aa9.48□□□□□ -0.89
BRCA1-215ENST00000478531 GJD4Q96KN9 370 aaPredicted RBP9.48□□□□□ -0.89
BRCA1-215ENST00000478531 AATKQ6ZMQ8 1374 aa9.48□□□□□ -0.89
BRCA1-215ENST00000478531 ABCC6O95255 1503 aa9.47□□□□□ -0.89
BRCA1-215ENST00000478531 A0A0G2JS52 829 aa9.47□□□□□ -0.89
BRCA1-215ENST00000478531 MYT1Q01538 1121 aa9.47□□□□□ -0.89
BRCA1-215ENST00000478531 USP35Q9P2H5 1018 aa9.47□□□□□ -0.89
BRCA1-215ENST00000478531 WNK3Q9BYP7 1800 aa9.47□□□□□ -0.89
BRCA1-215ENST00000478531 CDK12Q9NYV4 1490 aaPredicted RBP9.46□□□□□ -0.89
BRCA1-215ENST00000478531 KCNA4P22459 653 aa9.46□□□□□ -0.89
BRCA1-215ENST00000478531 RRS1Q15050 365 aaKnown RBP9.46□□□□□ -0.89
BRCA1-215ENST00000478531 LARP1Q6PKG0 1096 aaKnown RBP9.46□□□□□ -0.89
BRCA1-215ENST00000478531 AXIN2Q9Y2T1 843 aa9.46□□□□□ -0.89
BRCA1-215ENST00000478531 KNSTRNQ9Y448 316 aa9.46□□□□□ -0.89
BRCA1-215ENST00000478531 PEAK1Q9H792 1746 aa9.46□□□□□ -0.89
BRCA1-215ENST00000478531 TNNT2P45379 298 aaPredicted RBP9.46□□□□□ -0.9
BRCA1-215ENST00000478531 CNGB1Q14028 1251 aaPredicted RBP9.46□□□□□ -0.9
BRCA1-215ENST00000478531 RGPD2P0DJD1 1756 aa9.46□□□□□ -0.9
BRCA1-215ENST00000478531 SPATA31A5Q5VU36 1347 aa9.45□□□□□ -0.9
BRCA1-215ENST00000478531 SPATA31A7Q8IWB4 1347 aa9.45□□□□□ -0.9
BRCA1-215ENST00000478531 CSB-PGBD3P0DP91 1061 aa9.45□□□□□ -0.9
BRCA1-215ENST00000478531 FAM98CQ17RN3 349 aaKnown RBP9.45□□□□□ -0.9
BRCA1-215ENST00000478531 FAM208AQ9UK61 1670 aaKnown RBP9.45□□□□□ -0.9
BRCA1-215ENST00000478531 MAP3K19Q56UN5 1328 aa9.45□□□□□ -0.9
BRCA1-215ENST00000478531 AMPHP49418 695 aa9.44□□□□□ -0.9
BRCA1-215ENST00000478531 TOM1L2Q6ZVM7 507 aa9.44□□□□□ -0.9
BRCA1-215ENST00000478531 CRB1P82279 1406 aa9.44□□□□□ -0.9
BRCA1-215ENST00000478531 SPATA31A1Q5TZJ5 1347 aa9.44□□□□□ -0.9
BRCA1-215ENST00000478531 NSD2O96028 1365 aa9.44□□□□□ -0.9
BRCA1-215ENST00000478531 THSD7AQ9UPZ6 1657 aa9.44□□□□□ -0.9
BRCA1-215ENST00000478531 LTV1Q96GA3 475 aaPredicted RBP9.44□□□□□ -0.9
BRCA1-215ENST00000478531 WDR17Q8IZU2 1322 aa9.44□□□□□ -0.9
BRCA1-215ENST00000478531 BLMP54132 1417 aaPredicted RBP9.43□□□□□ -0.9
BRCA1-215ENST00000478531 PPM1GO15355 546 aaPredicted RBP9.43□□□□□ -0.9
BRCA1-215ENST00000478531 RTL1A6NKG5 1358 aa9.43□□□□□ -0.9
BRCA1-215ENST00000478531 HOXC9P31274 260 aa9.43□□□□□ -0.9
BRCA1-215ENST00000478531 CC2D1BQ5T0F9 858 aaKnown RBP9.43□□□□□ -0.9
BRCA1-215ENST00000478531 MORC1Q86VD1 984 aa9.43□□□□□ -0.9
BRCA1-215ENST00000478531 ANKRD24Q8TF21 1146 aa9.43□□□□□ -0.9
BRCA1-215ENST00000478531 EMILIN1Q9Y6C2 1016 aa9.43□□□□□ -0.9
BRCA1-215ENST00000478531 ERBB3P21860 1342 aa9.42□□□□□ -0.9
BRCA1-215ENST00000478531 AMER1Q5JTC6 1135 aaPredicted RBP9.42□□□□□ -0.9
BRCA1-215ENST00000478531 SEPT12Q8IYM1 358 aa9.42□□□□□ -0.9
BRCA1-215ENST00000478531 IP6K1Q92551 441 aa9.42□□□□□ -0.9
BRCA1-215ENST00000478531 FLT4P35916 1363 aa9.42□□□□□ -0.9
BRCA1-215ENST00000478531 PARP4Q9UKK3 1724 aaKnown RBP9.41□□□□□ -0.9
BRCA1-215ENST00000478531 TCP11L2Q8N4U5 519 aa9.41□□□□□ -0.9
BRCA1-215ENST00000478531 NLRP2Q9NX02 1062 aa9.41□□□□□ -0.9
BRCA1-215ENST00000478531 LRRC37A3O60309 1634 aa9.41□□□□□ -0.9
BRCA1-215ENST00000478531 SMG6Q86US8 1419 aaKnown RBP9.41□□□□□ -0.9
BRCA1-215ENST00000478531 SOCS7O14512 581 aa9.4□□□□□ -0.9
BRCA1-215ENST00000478531 PER1O15534 1290 aaPredicted RBP9.4□□□□□ -0.9
BRCA1-215ENST00000478531 MAPK8IP2Q13387 824 aaPredicted RBP9.39□□□□□ -0.91
BRCA1-215ENST00000478531 HSP90AB2PQ58FF8 381 aa9.39□□□□□ -0.91
BRCA1-215ENST00000478531 BARGINQ6ZT62 677 aa9.39□□□□□ -0.91
BRCA1-215ENST00000478531 CARD10Q9BWT7 1032 aa9.39□□□□□ -0.91
BRCA1-215ENST00000478531 POLKQ9UBT6 870 aa9.39□□□□□ -0.91
BRCA1-215ENST00000478531 THRAP3Q9Y2W1 955 aaKnown RBP9.39□□□□□ -0.91
BRCA1-215ENST00000478531 INSRP06213 1382 aa9.38□□□□□ -0.91
BRCA1-215ENST00000478531 KIF24Q5T7B8 1368 aa9.38□□□□□ -0.91
BRCA1-215ENST00000478531 ONECUT3O60422 494 aaPredicted RBP9.38□□□□□ -0.91
BRCA1-215ENST00000478531 DDX10Q13206 875 aaKnown RBP9.38□□□□□ -0.91
BRCA1-215ENST00000478531 FAM182BQ5T319 152 aa9.38□□□□□ -0.91
BRCA1-215ENST00000478531 KRT27Q7Z3Y8 459 aa9.38□□□□□ -0.91
BRCA1-215ENST00000478531 USHBP1Q8N6Y0 703 aa9.37□□□□□ -0.91
BRCA1-215ENST00000478531 KAT6BQ8WYB5 2073 aa9.37□□□□□ -0.91
BRCA1-215ENST00000478531 NPC1L1Q9UHC9 1359 aa9.37□□□□□ -0.91
BRCA1-215ENST00000478531 DISP2A7MBM2 1401 aa9.36□□□□□ -0.91
BRCA1-215ENST00000478531 PDE3BQ13370 1112 aa9.36□□□□□ -0.91
BRCA1-215ENST00000478531 DDB1Q16531 1140 aa9.35□□□□□ -0.91
BRCA1-215ENST00000478531 NBPF6Q5VWK0 638 aa9.35□□□□□ -0.91
BRCA1-215ENST00000478531 NBPF4Q96M43 638 aa9.35□□□□□ -0.91
BRCA1-215ENST00000478531 MEGF6O75095 1541 aa9.35□□□□□ -0.91
BRCA1-215ENST00000478531 IL2RBP14784 551 aa9.35□□□□□ -0.91
BRCA1-215ENST00000478531 SHANK3Q9BYB0 1731 aa9.35□□□□□ -0.91
BRCA1-215ENST00000478531 TNS2Q63HR2 1409 aa9.35□□□□□ -0.91
BRCA1-215ENST00000478531 RGPD1P0DJD0 1748 aa9.34□□□□□ -0.91
BRCA1-215ENST00000478531 EIF4A2Q14240 407 aaKnown RBP9.34□□□□□ -0.91
BRCA1-215ENST00000478531 CDCA7Q9BWT1 371 aaPredicted RBP9.34□□□□□ -0.91
BRCA1-215ENST00000478531 SBF2Q86WG5 1849 aa9.34□□□□□ -0.91
BRCA1-215ENST00000478531 MTHFSP49914 203 aa9.33□□□□□ -0.92
BRCA1-215ENST00000478531 UPF1Q92900 1129 aaKnown RBP eCLIP9.33□□□□□ -0.92
BRCA1-215ENST00000478531 TNS1Q9HBL0 1735 aaKnown RBP9.33□□□□□ -0.92
BRCA1-215ENST00000478531 OVOS2A0A0G2JMS6 1433 aa9.33□□□□□ -0.92
BRCA1-215ENST00000478531 ZNF316A6NFI3 1004 aaPredicted RBP9.33□□□□□ -0.92
BRCA1-215ENST00000478531 EXOC5O00471 708 aa9.32□□□□□ -0.92
BRCA1-215ENST00000478531 RAPGEF4Q8WZA2 1011 aa9.32□□□□□ -0.92
BRCA1-215ENST00000478531 EYA1Q99502 592 aa9.32□□□□□ -0.92
BRCA1-215ENST00000478531 PKD1L3Q7Z443 1732 aa9.32□□□□□ -0.92
BRCA1-215ENST00000478531 NCBP3Q53F19 620 aaKnown RBP9.32□□□□□ -0.92
BRCA1-215ENST00000478531 DOT1LQ8TEK3 1739 aa9.31□□□□□ -0.92
BRCA1-215ENST00000478531 MARCH10Q8NA82 808 aaPredicted RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms