RNA–Protein interactions for RNA: ENST00000477757.5

PDLIM1-202, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 850 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-202ENST00000477757 PDGFDQ9GZP0 370 aaPredicted RBP29.53■■■□□ 2.32
PDLIM1-202ENST00000477757 ZBTB7CA1YPR0 619 aa29.52■■■□□ 2.32
PDLIM1-202ENST00000477757 UTRNP46939 3433 aa29.51■■■□□ 2.32
PDLIM1-202ENST00000477757 WDR17Q8IZU2 1322 aa29.51■■■□□ 2.32
PDLIM1-202ENST00000477757 TOM1L2Q6ZVM7 507 aa29.51■■■□□ 2.31
PDLIM1-202ENST00000477757 QRICH2Q9H0J4 1663 aa29.5■■■□□ 2.31
PDLIM1-202ENST00000477757 ZBTB7AO95365 584 aa29.5■■■□□ 2.31
PDLIM1-202ENST00000477757 PTGER2P43116 358 aa29.5■■■□□ 2.31
PDLIM1-202ENST00000477757 NLRP6P59044 892 aa29.5■■■□□ 2.31
PDLIM1-202ENST00000477757 PROM2Q8N271 834 aa29.5■■■□□ 2.31
PDLIM1-202ENST00000477757 CENPJQ9HC77 1338 aaPredicted RBP29.49■■■□□ 2.31
PDLIM1-202ENST00000477757 CPSF1Q10570 1443 aaKnown RBP29.49■■■□□ 2.31
PDLIM1-202ENST00000477757 MARCH10Q8NA82 808 aaPredicted RBP29.49■■■□□ 2.31
PDLIM1-202ENST00000477757 CDCA7Q9BWT1 371 aaPredicted RBP29.49■■■□□ 2.31
PDLIM1-202ENST00000477757 CABP2Q9NPB3 220 aa29.49■■■□□ 2.31
PDLIM1-202ENST00000477757 NBPF1Q3BBV0 1214 aa29.46■■■□□ 2.31
PDLIM1-202ENST00000477757 ZNF784Q8NCA9 323 aaPredicted RBP29.46■■■□□ 2.31
PDLIM1-202ENST00000477757 AXIN2Q9Y2T1 843 aa29.45■■■□□ 2.31
PDLIM1-202ENST00000477757 STK32BQ9NY57 414 aa29.43■■■□□ 2.3
PDLIM1-202ENST00000477757 CABP1Q9NZU7 370 aa29.43■■■□□ 2.3
PDLIM1-202ENST00000477757 TXNRD1Q16881 649 aa29.42■■■□□ 2.3
PDLIM1-202ENST00000477757 ATF5Q9Y2D1 282 aaPredicted RBP29.41■■■□□ 2.3
PDLIM1-202ENST00000477757 SLC15A2Q16348 729 aa29.4■■■□□ 2.3
PDLIM1-202ENST00000477757 CARD10Q9BWT7 1032 aa29.4■■■□□ 2.3
PDLIM1-202ENST00000477757 FHDC1Q9C0D6 1143 aaPredicted RBP29.4■■■□□ 2.3
PDLIM1-202ENST00000477757 TRPM1Q7Z4N2 1603 aa29.4■■■□□ 2.3
PDLIM1-202ENST00000477757 TNS2Q63HR2 1409 aa29.39■■■□□ 2.3
PDLIM1-202ENST00000477757 SYT17Q9BSW7 474 aa29.39■■■□□ 2.3
PDLIM1-202ENST00000477757 NHSQ6T4R5 1651 aa29.39■■■□□ 2.3
PDLIM1-202ENST00000477757 RGPD5Q99666 1765 aa29.39■■■□□ 2.29
PDLIM1-202ENST00000477757 ARHGEF25Q86VW2 580 aa29.38■■■□□ 2.29
PDLIM1-202ENST00000477757 MTFR1LQ9H019 292 aa29.38■■■□□ 2.29
PDLIM1-202ENST00000477757 ABCC6O95255 1503 aa29.38■■■□□ 2.29
PDLIM1-202ENST00000477757 SGIP1Q9BQI5 828 aa29.37■■■□□ 2.29
PDLIM1-202ENST00000477757 PAPPAQ13219 1627 aa29.37■■■□□ 2.29
PDLIM1-202ENST00000477757 NFAT5O94916 1531 aa29.36■■■□□ 2.29
PDLIM1-202ENST00000477757 CHD4Q14839 1912 aa29.35■■■□□ 2.29
PDLIM1-202ENST00000477757 CCDC7Q96M83 1385 aa29.35■■■□□ 2.29
PDLIM1-202ENST00000477757 KCNH5Q8NCM2 988 aa29.34■■■□□ 2.29
PDLIM1-202ENST00000477757 CSB-PGBD3P0DP91 1061 aa29.33■■■□□ 2.29
PDLIM1-202ENST00000477757 MAP3K5Q99683 1374 aa29.32■■■□□ 2.28
PDLIM1-202ENST00000477757 EXOC5O00471 708 aa29.32■■■□□ 2.28
PDLIM1-202ENST00000477757 TTC21BQ7Z4L5 1316 aa29.31■■■□□ 2.28
PDLIM1-202ENST00000477757 EVC2Q86UK5 1308 aa29.29■■■□□ 2.28
PDLIM1-202ENST00000477757 TTC21AQ8NDW8 1320 aa29.28■■■□□ 2.28
PDLIM1-202ENST00000477757 SOX12O15370 315 aa29.27■■■□□ 2.28
PDLIM1-202ENST00000477757 SENP3-EIF4A1A0A087X0R7 540 aa29.26■■■□□ 2.27
PDLIM1-202ENST00000477757 ARXQ96QS3 562 aa29.26■■■□□ 2.27
PDLIM1-202ENST00000477757 ZNF692Q9BU19 519 aaPredicted RBP29.26■■■□□ 2.27
PDLIM1-202ENST00000477757 C1QTNF8P60827 252 aa29.24■■■□□ 2.27
PDLIM1-202ENST00000477757 BTAF1O14981 1849 aa29.24■■■□□ 2.27
PDLIM1-202ENST00000477757 USP54Q70EL1 1684 aa29.21■■■□□ 2.27
PDLIM1-202ENST00000477757 MON2Q7Z3U7 1717 aa29.2■■■□□ 2.27
PDLIM1-202ENST00000477757 ERBB3P21860 1342 aa29.2■■■□□ 2.26
PDLIM1-202ENST00000477757 ACSBG1Q96GR2 724 aa29.19■■■□□ 2.26
PDLIM1-202ENST00000477757 ZNF827Q17R98 1081 aa29.18■■■□□ 2.26
PDLIM1-202ENST00000477757 QSER1Q2KHR3 1735 aa29.17■■■□□ 2.26
PDLIM1-202ENST00000477757 KTN1Q86UP2 1357 aaKnown RBP29.17■■■□□ 2.26
PDLIM1-202ENST00000477757 GOLGB1Q14789 3259 aaKnown RBP29.16■■■□□ 2.26
PDLIM1-202ENST00000477757 COL24A1Q17RW2 1714 aa29.15■■■□□ 2.26
PDLIM1-202ENST00000477757 USP31Q70CQ4 1352 aa29.14■■■□□ 2.26
PDLIM1-202ENST00000477757 IL2RBP14784 551 aa29.14■■■□□ 2.26
PDLIM1-202ENST00000477757 LTN1O94822 1766 aa29.13■■■□□ 2.25
PDLIM1-202ENST00000477757 LRRC4BQ9NT99 713 aa29.13■■■□□ 2.25
PDLIM1-202ENST00000477757 NLRP2Q9NX02 1062 aa29.13■■■□□ 2.25
PDLIM1-202ENST00000477757 GPR162Q16538 588 aa29.11■■■□□ 2.25
PDLIM1-202ENST00000477757 SLC16A10Q8TF71 515 aa29.09■■■□□ 2.25
PDLIM1-202ENST00000477757 AKT1S1Q96B36 256 aa29.09■■■□□ 2.25
PDLIM1-202ENST00000477757 CEP350Q5VT06 3117 aa29.08■■■□□ 2.25
PDLIM1-202ENST00000477757 ROCK2O75116 1388 aaKnown RBP29.07■■■□□ 2.24
PDLIM1-202ENST00000477757 GIGYF1O75420 1035 aaPredicted RBP29.07■■■□□ 2.24
PDLIM1-202ENST00000477757 L3MBTL2Q969R5 705 aa29.07■■■□□ 2.24
PDLIM1-202ENST00000477757 TUBGCP6Q96RT7 1819 aa29.06■■■□□ 2.24
PDLIM1-202ENST00000477757 SHANK3Q9BYB0 1731 aa29.06■■■□□ 2.24
PDLIM1-202ENST00000477757 SLC27A3Q5K4L6 730 aa29.06■■■□□ 2.24
PDLIM1-202ENST00000477757 CD163L1Q9NR16 1453 aa29.05■■■□□ 2.24
PDLIM1-202ENST00000477757 ANKRD24Q8TF21 1146 aa29.05■■■□□ 2.24
PDLIM1-202ENST00000477757 SBNO2Q9Y2G9 1366 aa29.04■■■□□ 2.24
PDLIM1-202ENST00000477757 PNPLA7Q6ZV29 1317 aa29.04■■■□□ 2.24
PDLIM1-202ENST00000477757 POLD1P28340 1107 aa29.04■■■□□ 2.24
PDLIM1-202ENST00000477757 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.04■■■□□ 2.248e-7■■□□□ 12.9
PDLIM1-202ENST00000477757 FAM208AQ9UK61 1670 aaKnown RBP29.03■■■□□ 2.24
PDLIM1-202ENST00000477757 NME9Q86XW9 330 aa29.03■■■□□ 2.24
PDLIM1-202ENST00000477757 KLHL34Q8N239 644 aa29.02■■■□□ 2.24
PDLIM1-202ENST00000477757 KAT6BQ8WYB5 2073 aa28.98■■■□□ 2.23
PDLIM1-202ENST00000477757 LY75O60449 1722 aa28.98■■■□□ 2.23
PDLIM1-202ENST00000477757 PELP1Q8IZL8 1130 aaKnown RBP28.98■■■□□ 2.23
PDLIM1-202ENST00000477757 DOT1LQ8TEK3 1739 aa28.97■■■□□ 2.23
PDLIM1-202ENST00000477757 EDC4Q6P2E9 1401 aaKnown RBP28.97■■■□□ 2.23
PDLIM1-202ENST00000477757 IFFO2Q5TF58 517 aa28.97■■■□□ 2.23
PDLIM1-202ENST00000477757 NLGN2Q8NFZ4 835 aa28.97■■■□□ 2.23
PDLIM1-202ENST00000477757 TFCP2L1Q9NZI6 479 aa28.96■■■□□ 2.23
PDLIM1-202ENST00000477757 ANKRD36BQ8N2N9 1353 aa28.95■■■□□ 2.22
PDLIM1-202ENST00000477757 NSD2O96028 1365 aa28.94■■■□□ 2.22
PDLIM1-202ENST00000477757 DDX54Q8TDD1 881 aaKnown RBP28.93■■■□□ 2.22
PDLIM1-202ENST00000477757 KCNQ4P56696 695 aa28.91■■■□□ 2.22
PDLIM1-202ENST00000477757 HDGFL2Q7Z4V5 671 aaPredicted RBP28.91■■■□□ 2.22
PDLIM1-202ENST00000477757 YBX3P16989 372 aaKnown RBP eCLIP28.89■■■□□ 2.224e-10■■■□□ 16.3
PDLIM1-202ENST00000477757 IP6K1Q92551 441 aa28.89■■■□□ 2.22
PDLIM1-202ENST00000477757 A0A1W2PP64 1363 aa28.88■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms