RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 THRAP3Q9Y2W1 955 aaKnown RBP19.93■□□□□ 0.78
UPF3A-204ENST00000475218 WNK3Q9BYP7 1800 aa19.93■□□□□ 0.78
UPF3A-204ENST00000475218 LRRC37A3O60309 1634 aa19.92■□□□□ 0.78
UPF3A-204ENST00000475218 SF3B2Q13435 895 aaKnown RBP19.92■□□□□ 0.78
UPF3A-204ENST00000475218 DISP2A7MBM2 1401 aa19.92■□□□□ 0.78
UPF3A-204ENST00000475218 WDR17Q8IZU2 1322 aa19.91■□□□□ 0.78
UPF3A-204ENST00000475218 PCGF6Q9BYE7 350 aa19.91■□□□□ 0.78
UPF3A-204ENST00000475218 OVOS2A0A0J9YW53 1432 aa19.91■□□□□ 0.78
UPF3A-204ENST00000475218 OVOS2Q6IE36 1432 aa19.91■□□□□ 0.78
UPF3A-204ENST00000475218 PEAK1Q9H792 1746 aa19.91■□□□□ 0.78
UPF3A-204ENST00000475218 ABCC6O95255 1503 aa19.91■□□□□ 0.78
UPF3A-204ENST00000475218 HDGFL2Q7Z4V5 671 aaPredicted RBP19.9■□□□□ 0.78
UPF3A-204ENST00000475218 LTN1O94822 1766 aa19.9■□□□□ 0.78
UPF3A-204ENST00000475218 CLSPNQ9HAW4 1339 aa19.89■□□□□ 0.78
UPF3A-204ENST00000475218 EN1Q05925 392 aaPredicted RBP19.89■□□□□ 0.77
UPF3A-204ENST00000475218 FAM196AQ6ZSG2 479 aa19.89■□□□□ 0.77
UPF3A-204ENST00000475218 TERF2IPQ9NYB0 399 aa19.89■□□□□ 0.77
UPF3A-204ENST00000475218 TRIM37O94972 964 aa19.88■□□□□ 0.77
UPF3A-204ENST00000475218 BAG6P46379 1132 aa19.88■□□□□ 0.77
UPF3A-204ENST00000475218 NINLQ9Y2I6 1382 aa19.88■□□□□ 0.77
UPF3A-204ENST00000475218 TOM1L2Q6ZVM7 507 aa19.88■□□□□ 0.77
UPF3A-204ENST00000475218 TIMELESSQ9UNS1 1208 aa19.87■□□□□ 0.77
UPF3A-204ENST00000475218 PDE3BQ13370 1112 aa19.86■□□□□ 0.77
UPF3A-204ENST00000475218 CARD10Q9BWT7 1032 aa19.85■□□□□ 0.77
UPF3A-204ENST00000475218 ANKRD36BQ8N2N9 1353 aa19.84■□□□□ 0.77
UPF3A-204ENST00000475218 CAMKK2Q96RR4 588 aa19.84■□□□□ 0.77
UPF3A-204ENST00000475218 SBF2Q86WG5 1849 aa19.84■□□□□ 0.77
UPF3A-204ENST00000475218 EZH2Q15910 746 aaKnown RBP19.83■□□□□ 0.77
UPF3A-204ENST00000475218 MYOM1P52179 1685 aa19.83■□□□□ 0.77
UPF3A-204ENST00000475218 SLC24A1O60721 1099 aa19.83■□□□□ 0.76
UPF3A-204ENST00000475218 TMF1P82094 1093 aa19.83■□□□□ 0.76
UPF3A-204ENST00000475218 ERBB3P21860 1342 aa19.82■□□□□ 0.76
UPF3A-204ENST00000475218 RREB1Q92766 1687 aa19.82■□□□□ 0.76
UPF3A-204ENST00000475218 OVOS2A0A0G2JMS6 1433 aa19.81■□□□□ 0.76
UPF3A-204ENST00000475218 APBA3O96018 575 aa19.8■□□□□ 0.76
UPF3A-204ENST00000475218 CSB-PGBD3P0DP91 1061 aa19.8■□□□□ 0.76
UPF3A-204ENST00000475218 FBLN1P23142 703 aa19.8■□□□□ 0.76
UPF3A-204ENST00000475218 DDB1Q16531 1140 aa19.8■□□□□ 0.76
UPF3A-204ENST00000475218 PTF1AQ7RTS3 328 aa19.8■□□□□ 0.76
UPF3A-204ENST00000475218 MARCH10Q8NA82 808 aaPredicted RBP19.8■□□□□ 0.76
UPF3A-204ENST00000475218 PSDA5PKW4 1024 aaPredicted RBP19.79■□□□□ 0.76
UPF3A-204ENST00000475218 NUP188Q5SRE5 1749 aa19.79■□□□□ 0.76
UPF3A-204ENST00000475218 CCDC7Q96M83 1385 aa19.78■□□□□ 0.76
UPF3A-204ENST00000475218 BCL9O00512 1426 aa19.77■□□□□ 0.76
UPF3A-204ENST00000475218 ANKRD24Q8TF21 1146 aa19.77■□□□□ 0.76
UPF3A-204ENST00000475218 CDCA7Q9BWT1 371 aaPredicted RBP19.77■□□□□ 0.76
UPF3A-204ENST00000475218 FYB1O15117 783 aa19.76■□□□□ 0.75
UPF3A-204ENST00000475218 TNS2Q63HR2 1409 aa19.76■□□□□ 0.75
UPF3A-204ENST00000475218 PARD3Q8TEW0 1356 aa19.76■□□□□ 0.75
UPF3A-204ENST00000475218 MAP3K19Q56UN5 1328 aa19.75■□□□□ 0.75
UPF3A-204ENST00000475218 IP6K1Q92551 441 aa19.75■□□□□ 0.75
UPF3A-204ENST00000475218 LRP5O75197 1615 aa19.75■□□□□ 0.75
UPF3A-204ENST00000475218 COG3Q96JB2 828 aa19.75■□□□□ 0.75
UPF3A-204ENST00000475218 CARD14Q9BXL6 1004 aa19.75■□□□□ 0.75
UPF3A-204ENST00000475218 KIF20BQ96Q89 1820 aa19.74■□□□□ 0.75
UPF3A-204ENST00000475218 GGNBP2Q9H3C7 697 aa19.73■□□□□ 0.75
UPF3A-204ENST00000475218 NLRP2Q9NX02 1062 aa19.73■□□□□ 0.75
UPF3A-204ENST00000475218 RGPD3A6NKT7 1758 aaPredicted RBP19.73■□□□□ 0.75
UPF3A-204ENST00000475218 RGPD4Q7Z3J3 1758 aa19.73■□□□□ 0.75
UPF3A-204ENST00000475218 RGPD2P0DJD1 1756 aa19.73■□□□□ 0.75
UPF3A-204ENST00000475218 R3HDM1Q15032 1099 aaKnown RBP19.72■□□□□ 0.75
UPF3A-204ENST00000475218 C11orf95C9JLR9 678 aaPredicted RBP19.72■□□□□ 0.75
UPF3A-204ENST00000475218 FAM208AQ9UK61 1670 aaKnown RBP19.72■□□□□ 0.75
UPF3A-204ENST00000475218 HOXC9P31274 260 aa19.71■□□□□ 0.75
UPF3A-204ENST00000475218 CCER1Q8TC90 406 aaPredicted RBP19.71■□□□□ 0.75
UPF3A-204ENST00000475218 EXOC5O00471 708 aa19.7■□□□□ 0.74
UPF3A-204ENST00000475218 CDCA8Q53HL2 280 aa19.7■□□□□ 0.74
UPF3A-204ENST00000475218 BCL11BQ9C0K0 894 aaPredicted RBP19.7■□□□□ 0.74
UPF3A-204ENST00000475218 IL2RBP14784 551 aa19.69■□□□□ 0.74
UPF3A-204ENST00000475218 RRS1Q15050 365 aaKnown RBP19.69■□□□□ 0.74
UPF3A-204ENST00000475218 LTV1Q96GA3 475 aaPredicted RBP19.68■□□□□ 0.74
UPF3A-204ENST00000475218 NSD3Q9BZ95 1437 aa19.68■□□□□ 0.74
UPF3A-204ENST00000475218 PROM2Q8N271 834 aa19.67■□□□□ 0.74
UPF3A-204ENST00000475218 NHSQ6T4R5 1651 aa19.67■□□□□ 0.74
UPF3A-204ENST00000475218 PLSCR1O15162 318 aa19.67■□□□□ 0.74
UPF3A-204ENST00000475218 RTL1A6NKG5 1358 aa19.66■□□□□ 0.74
UPF3A-204ENST00000475218 KCNQ2O43526 872 aa19.66■□□□□ 0.74
UPF3A-204ENST00000475218 HSPA5P11021 654 aaKnown RBP19.66■□□□□ 0.74
UPF3A-204ENST00000475218 SHANK3Q9BYB0 1731 aa19.65■□□□□ 0.74
UPF3A-204ENST00000475218 AMPHP49418 695 aa19.65■□□□□ 0.74
UPF3A-204ENST00000475218 MEGF6O75095 1541 aa19.63■□□□□ 0.73
UPF3A-204ENST00000475218 ANO8Q9HCE9 1232 aaPredicted RBP19.62■□□□□ 0.73
UPF3A-204ENST00000475218 ANKRD26Q9UPS8 1709 aa19.62■□□□□ 0.73
UPF3A-204ENST00000475218 NBPF6Q5VWK0 638 aa19.62■□□□□ 0.73
UPF3A-204ENST00000475218 NBPF4Q96M43 638 aa19.62■□□□□ 0.73
UPF3A-204ENST00000475218 EIF4G2P78344 907 aaKnown RBP eCLIP19.61■□□□□ 0.73
UPF3A-204ENST00000475218 HSP90AB2PQ58FF8 381 aa19.61■□□□□ 0.73
UPF3A-204ENST00000475218 ACSBG1Q96GR2 724 aa19.61■□□□□ 0.73
UPF3A-204ENST00000475218 BTAF1O14981 1849 aa19.61■□□□□ 0.73
UPF3A-204ENST00000475218 INSRP06213 1382 aa19.6■□□□□ 0.73
UPF3A-204ENST00000475218 EMILIN1Q9Y6C2 1016 aa19.59■□□□□ 0.73
UPF3A-204ENST00000475218 USHBP1Q8N6Y0 703 aa19.58■□□□□ 0.73
UPF3A-204ENST00000475218 CASZ1Q86V15 1759 aa19.58■□□□□ 0.72
UPF3A-204ENST00000475218 FLT4P35916 1363 aa19.58■□□□□ 0.72
UPF3A-204ENST00000475218 KIF24Q5T7B8 1368 aa19.58■□□□□ 0.72
UPF3A-204ENST00000475218 NBPF14Q5TI25 921 aa19.57■□□□□ 0.72
UPF3A-204ENST00000475218 TXNRD1Q16881 649 aa19.57■□□□□ 0.72
UPF3A-204ENST00000475218 DDX54Q8TDD1 881 aaKnown RBP19.56■□□□□ 0.72
UPF3A-204ENST00000475218 POLR3GLQ9BT43 218 aa19.56■□□□□ 0.72
UPF3A-204ENST00000475218 PAPPAQ13219 1627 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms