RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 TIMELESSQ9UNS1 1208 aa21.23■□□□□ 0.99
VARS-223ENST00000474643 WDR17Q8IZU2 1322 aa21.23■□□□□ 0.99
VARS-223ENST00000474643 MON2Q7Z3U7 1717 aa21.22■□□□□ 0.99
VARS-223ENST00000474643 ARHGEF25Q86VW2 580 aa21.22■□□□□ 0.99
VARS-223ENST00000474643 TNS1Q9HBL0 1735 aaKnown RBP21.21■□□□□ 0.99
VARS-223ENST00000474643 EZH2Q15910 746 aaKnown RBP21.21■□□□□ 0.99
VARS-223ENST00000474643 DISP2A7MBM2 1401 aa21.21■□□□□ 0.99
VARS-223ENST00000474643 CDCA7Q9BWT1 371 aaPredicted RBP21.2■□□□□ 0.98
VARS-223ENST00000474643 SLC12A5Q9H2X9 1139 aa21.2■□□□□ 0.98
VARS-223ENST00000474643 OVOS2A0A0G2JMS6 1433 aa21.2■□□□□ 0.98
VARS-223ENST00000474643 OVOS2A0A0J9YW53 1432 aa21.2■□□□□ 0.98
VARS-223ENST00000474643 OVOS2Q6IE36 1432 aa21.2■□□□□ 0.98
VARS-223ENST00000474643 PARP4Q9UKK3 1724 aaKnown RBP21.19■□□□□ 0.98
VARS-223ENST00000474643 ST20-MTHFSA0A0A6YYL1 179 aa21.19■□□□□ 0.98
VARS-223ENST00000474643 NME9Q86XW9 330 aa21.19■□□□□ 0.98
VARS-223ENST00000474643 AXIN2Q9Y2T1 843 aa21.19■□□□□ 0.98
VARS-223ENST00000474643 PARD3Q8TEW0 1356 aa21.19■□□□□ 0.98
VARS-223ENST00000474643 EDC4Q6P2E9 1401 aaKnown RBP21.19■□□□□ 0.98
VARS-223ENST00000474643 R3HDM1Q15032 1099 aaKnown RBP21.18■□□□□ 0.98
VARS-223ENST00000474643 NINLQ9Y2I6 1382 aa21.17■□□□□ 0.98
VARS-223ENST00000474643 NFAT5O94916 1531 aa21.16■□□□□ 0.98
VARS-223ENST00000474643 A0A1W2PP64 1363 aa21.16■□□□□ 0.98
VARS-223ENST00000474643 CARD10Q9BWT7 1032 aa21.16■□□□□ 0.98
VARS-223ENST00000474643 NBPF14Q5TI25 921 aa21.15■□□□□ 0.98
VARS-223ENST00000474643 PUS7Q96PZ0 661 aaKnown RBP21.15■□□□□ 0.98
VARS-223ENST00000474643 COL18A1P39060 1754 aa21.15■□□□□ 0.98
VARS-223ENST00000474643 LRRC37A3O60309 1634 aa21.15■□□□□ 0.98
VARS-223ENST00000474643 CD163L1Q9NR16 1453 aa21.14■□□□□ 0.98
VARS-223ENST00000474643 USP31Q70CQ4 1352 aa21.14■□□□□ 0.98
VARS-223ENST00000474643 CCDC7Q96M83 1385 aa21.14■□□□□ 0.98
VARS-223ENST00000474643 CAMKK2Q96RR4 588 aa21.14■□□□□ 0.97
VARS-223ENST00000474643 NLRP2Q9NX02 1062 aa21.14■□□□□ 0.97
VARS-223ENST00000474643 ABCC6O95255 1503 aa21.14■□□□□ 0.97
VARS-223ENST00000474643 TMF1P82094 1093 aa21.13■□□□□ 0.97
VARS-223ENST00000474643 USP47Q96K76 1375 aa21.12■□□□□ 0.97
VARS-223ENST00000474643 EXOC5O00471 708 aa21.12■□□□□ 0.97
VARS-223ENST00000474643 RGPD5Q99666 1765 aa21.12■□□□□ 0.97
VARS-223ENST00000474643 COG3Q96JB2 828 aa21.11■□□□□ 0.97
VARS-223ENST00000474643 TESK2Q96S53 571 aa21.1■□□□□ 0.97
VARS-223ENST00000474643 WNK3Q9BYP7 1800 aa21.1■□□□□ 0.97
VARS-223ENST00000474643 LRP5O75197 1615 aa21.09■□□□□ 0.97
VARS-223ENST00000474643 CDCA8Q53HL2 280 aa21.09■□□□□ 0.97
VARS-223ENST00000474643 ANKRD24Q8TF21 1146 aa21.09■□□□□ 0.97
VARS-223ENST00000474643 LTN1O94822 1766 aa21.09■□□□□ 0.97
VARS-223ENST00000474643 ERBB3P21860 1342 aa21.08■□□□□ 0.97
VARS-223ENST00000474643 USP54Q70EL1 1684 aa21.08■□□□□ 0.96
VARS-223ENST00000474643 BCL11BQ9C0K0 894 aaPredicted RBP21.07■□□□□ 0.96
VARS-223ENST00000474643 MARCH10Q8NA82 808 aaPredicted RBP21.06■□□□□ 0.96
VARS-223ENST00000474643 LTV1Q96GA3 475 aaPredicted RBP21.06■□□□□ 0.96
VARS-223ENST00000474643 TNS2Q63HR2 1409 aa21.05■□□□□ 0.96
VARS-223ENST00000474643 IL2RBP14784 551 aa21.05■□□□□ 0.96
VARS-223ENST00000474643 ANKRD36BQ8N2N9 1353 aa21.05■□□□□ 0.96
VARS-223ENST00000474643 AMPHP49418 695 aa21.04■□□□□ 0.96
VARS-223ENST00000474643 RREB1Q92766 1687 aa21.04■□□□□ 0.96
VARS-223ENST00000474643 PEAK1Q9H792 1746 aa21.04■□□□□ 0.96
VARS-223ENST00000474643 NUP188Q5SRE5 1749 aa21.03■□□□□ 0.96
VARS-223ENST00000474643 PLSCR1O15162 318 aa21.01■□□□□ 0.95
VARS-223ENST00000474643 IP6K1Q92551 441 aa21.01■□□□□ 0.95
VARS-223ENST00000474643 POLR3GLQ9BT43 218 aa20.99■□□□□ 0.95
VARS-223ENST00000474643 PPP1R1BQ9UD71 204 aaPredicted RBP20.99■□□□□ 0.95
VARS-223ENST00000474643 SBF2Q86WG5 1849 aa20.99■□□□□ 0.95
VARS-223ENST00000474643 BCL9O00512 1426 aa20.98■□□□□ 0.95
VARS-223ENST00000474643 ACSBG1Q96GR2 724 aa20.98■□□□□ 0.95
VARS-223ENST00000474643 GGNBP2Q9H3C7 697 aa20.98■□□□□ 0.95
VARS-223ENST00000474643 SMG6Q86US8 1419 aaKnown RBP20.97■□□□□ 0.95
VARS-223ENST00000474643 MAP3K19Q56UN5 1328 aa20.97■□□□□ 0.95
VARS-223ENST00000474643 RGPD3A6NKT7 1758 aaPredicted RBP20.97■□□□□ 0.95
VARS-223ENST00000474643 RGPD4Q7Z3J3 1758 aa20.97■□□□□ 0.95
VARS-223ENST00000474643 FAM208AQ9UK61 1670 aaKnown RBP20.96■□□□□ 0.95
VARS-223ENST00000474643 HOXC9P31274 260 aa20.95■□□□□ 0.94
VARS-223ENST00000474643 PTF1AQ7RTS3 328 aa20.95■□□□□ 0.94
VARS-223ENST00000474643 DDX54Q8TDD1 881 aaKnown RBP20.95■□□□□ 0.94
VARS-223ENST00000474643 SPON1Q9HCB6 807 aa20.94■□□□□ 0.94
VARS-223ENST00000474643 STK32BQ9NY57 414 aa20.94■□□□□ 0.94
VARS-223ENST00000474643 RRS1Q15050 365 aaKnown RBP20.93■□□□□ 0.94
VARS-223ENST00000474643 RTL1A6NKG5 1358 aa20.93■□□□□ 0.94
VARS-223ENST00000474643 FYB1O15117 783 aa20.92■□□□□ 0.94
VARS-223ENST00000474643 KCNQ2O43526 872 aa20.92■□□□□ 0.94
VARS-223ENST00000474643 FBLN1P23142 703 aa20.92■□□□□ 0.94
VARS-223ENST00000474643 EIF4G2P78344 907 aaKnown RBP eCLIP20.92■□□□□ 0.94
VARS-223ENST00000474643 TXNRD1Q16881 649 aa20.92■□□□□ 0.94
VARS-223ENST00000474643 KIF20BQ96Q89 1820 aa20.9■□□□□ 0.94
VARS-223ENST00000474643 NHSQ6T4R5 1651 aa20.9■□□□□ 0.94
VARS-223ENST00000474643 SYTL4Q96C24 671 aaPredicted RBP20.9■□□□□ 0.94
VARS-223ENST00000474643 NSD3Q9BZ95 1437 aa20.89■□□□□ 0.94
VARS-223ENST00000474643 ANO8Q9HCE9 1232 aaPredicted RBP20.89■□□□□ 0.93
VARS-223ENST00000474643 DCAF8L1A6NGE4 600 aa20.88■□□□□ 0.93
VARS-223ENST00000474643 RAPGEF4Q8WZA2 1011 aa20.88■□□□□ 0.93
VARS-223ENST00000474643 KAT6BQ8WYB5 2073 aa20.87■□□□□ 0.93
VARS-223ENST00000474643 PPM1GO15355 546 aaPredicted RBP20.86■□□□□ 0.93
VARS-223ENST00000474643 HSPA5P11021 654 aaKnown RBP20.86■□□□□ 0.93
VARS-223ENST00000474643 FLT4P35916 1363 aa20.85■□□□□ 0.93
VARS-223ENST00000474643 CGNL1Q0VF96 1302 aa20.85■□□□□ 0.93
VARS-223ENST00000474643 PROM2Q8N271 834 aa20.85■□□□□ 0.93
VARS-223ENST00000474643 USHBP1Q8N6Y0 703 aa20.85■□□□□ 0.93
VARS-223ENST00000474643 ZCRB1Q8TBF4 217 aaKnown RBP20.85■□□□□ 0.93
VARS-223ENST00000474643 ZBTB7AO95365 584 aa20.84■□□□□ 0.93
VARS-223ENST00000474643 TATP17735 454 aaPredicted RBP20.84■□□□□ 0.93
VARS-223ENST00000474643 SLC15A2Q16348 729 aa20.84■□□□□ 0.93
VARS-223ENST00000474643 MYOM1P52179 1685 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms