RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 EDC4Q6P2E9 1401 aaKnown RBP26.23■■□□□ 1.79
COL7A1-209ENST00000474432 FAM196AQ6ZSG2 479 aa26.23■■□□□ 1.79
COL7A1-209ENST00000474432 WDR17Q8IZU2 1322 aa26.22■■□□□ 1.79
COL7A1-209ENST00000474432 BAG6P46379 1132 aa26.22■■□□□ 1.79
COL7A1-209ENST00000474432 HDGFL2Q7Z4V5 671 aaPredicted RBP26.22■■□□□ 1.79
COL7A1-209ENST00000474432 WNK3Q9BYP7 1800 aa26.22■■□□□ 1.79
COL7A1-209ENST00000474432 SRCAPQ6ZRS2 3230 aa26.21■■□□□ 1.79
COL7A1-209ENST00000474432 EN1Q05925 392 aaPredicted RBP26.21■■□□□ 1.79
COL7A1-209ENST00000474432 PDE3BQ13370 1112 aa26.2■■□□□ 1.78
COL7A1-209ENST00000474432 LRRC37A3O60309 1634 aa26.2■■□□□ 1.78
COL7A1-209ENST00000474432 USP47Q96K76 1375 aa26.2■■□□□ 1.78
COL7A1-209ENST00000474432 PEAK1Q9H792 1746 aa26.19■■□□□ 1.78
COL7A1-209ENST00000474432 ABCC6O95255 1503 aa26.19■■□□□ 1.78
COL7A1-209ENST00000474432 TRIM37O94972 964 aa26.19■■□□□ 1.78
COL7A1-209ENST00000474432 TOM1L2Q6ZVM7 507 aa26.19■■□□□ 1.78
COL7A1-209ENST00000474432 TERF2IPQ9NYB0 399 aa26.19■■□□□ 1.78
COL7A1-209ENST00000474432 OVOS2A0A0J9YW53 1432 aa26.18■■□□□ 1.78
COL7A1-209ENST00000474432 OVOS2Q6IE36 1432 aa26.18■■□□□ 1.78
COL7A1-209ENST00000474432 LTN1O94822 1766 aa26.18■■□□□ 1.78
COL7A1-209ENST00000474432 NINLQ9Y2I6 1382 aa26.17■■□□□ 1.78
COL7A1-209ENST00000474432 CLSPNQ9HAW4 1339 aa26.16■■□□□ 1.78
COL7A1-209ENST00000474432 PCGF6Q9BYE7 350 aa26.16■■□□□ 1.78
COL7A1-209ENST00000474432 TIMELESSQ9UNS1 1208 aa26.16■■□□□ 1.78
COL7A1-209ENST00000474432 CAMKK2Q96RR4 588 aa26.15■■□□□ 1.78
COL7A1-209ENST00000474432 SLC24A1O60721 1099 aa26.14■■□□□ 1.78
COL7A1-209ENST00000474432 CARD10Q9BWT7 1032 aa26.14■■□□□ 1.78
COL7A1-209ENST00000474432 EZH2Q15910 746 aaKnown RBP26.13■■□□□ 1.77
COL7A1-209ENST00000474432 SBF2Q86WG5 1849 aa26.12■■□□□ 1.77
COL7A1-209ENST00000474432 ANKRD36BQ8N2N9 1353 aa26.09■■□□□ 1.77
COL7A1-209ENST00000474432 APBA3O96018 575 aa26.09■■□□□ 1.77
COL7A1-209ENST00000474432 CSB-PGBD3P0DP91 1061 aa26.09■■□□□ 1.77
COL7A1-209ENST00000474432 TMF1P82094 1093 aa26.09■■□□□ 1.77
COL7A1-209ENST00000474432 DDB1Q16531 1140 aa26.09■■□□□ 1.77
COL7A1-209ENST00000474432 ERBB3P21860 1342 aa26.09■■□□□ 1.77
COL7A1-209ENST00000474432 RREB1Q92766 1687 aa26.09■■□□□ 1.77
COL7A1-209ENST00000474432 OVOS2A0A0G2JMS6 1433 aa26.08■■□□□ 1.77
COL7A1-209ENST00000474432 PSDA5PKW4 1024 aaPredicted RBP26.07■■□□□ 1.76
COL7A1-209ENST00000474432 MARCH10Q8NA82 808 aaPredicted RBP26.07■■□□□ 1.76
COL7A1-209ENST00000474432 CDCA7Q9BWT1 371 aaPredicted RBP26.07■■□□□ 1.76
COL7A1-209ENST00000474432 CCDC7Q96M83 1385 aa26.07■■□□□ 1.76
COL7A1-209ENST00000474432 PARD3Q8TEW0 1356 aa26.05■■□□□ 1.76
COL7A1-209ENST00000474432 MYOM1P52179 1685 aa26.04■■□□□ 1.76
COL7A1-209ENST00000474432 PTF1AQ7RTS3 328 aa26.04■■□□□ 1.76
COL7A1-209ENST00000474432 NUP188Q5SRE5 1749 aa26.04■■□□□ 1.76
COL7A1-209ENST00000474432 BCL9O00512 1426 aa26.04■■□□□ 1.76
COL7A1-209ENST00000474432 FBLN1P23142 703 aa26.03■■□□□ 1.76
COL7A1-209ENST00000474432 C11orf95C9JLR9 678 aaPredicted RBP26.02■■□□□ 1.76
COL7A1-209ENST00000474432 ANKRD24Q8TF21 1146 aa26.02■■□□□ 1.76
COL7A1-209ENST00000474432 FYB1O15117 783 aa26.01■■□□□ 1.75
COL7A1-209ENST00000474432 LRP5O75197 1615 aa26.01■■□□□ 1.75
COL7A1-209ENST00000474432 IP6K1Q92551 441 aa26.01■■□□□ 1.75
COL7A1-209ENST00000474432 R3HDM1Q15032 1099 aaKnown RBP26■■□□□ 1.75
COL7A1-209ENST00000474432 COG3Q96JB2 828 aa26■■□□□ 1.75
COL7A1-209ENST00000474432 MAP3K19Q56UN5 1328 aa25.99■■□□□ 1.75
COL7A1-209ENST00000474432 NLRP2Q9NX02 1062 aa25.99■■□□□ 1.75
COL7A1-209ENST00000474432 TNS2Q63HR2 1409 aa25.98■■□□□ 1.75
COL7A1-209ENST00000474432 RGPD3A6NKT7 1758 aaPredicted RBP25.98■■□□□ 1.75
COL7A1-209ENST00000474432 RGPD4Q7Z3J3 1758 aa25.98■■□□□ 1.75
COL7A1-209ENST00000474432 EXOC5O00471 708 aa25.98■■□□□ 1.75
COL7A1-209ENST00000474432 CARD14Q9BXL6 1004 aa25.97■■□□□ 1.75
COL7A1-209ENST00000474432 CDCA8Q53HL2 280 aa25.96■■□□□ 1.75
COL7A1-209ENST00000474432 BCL11BQ9C0K0 894 aaPredicted RBP25.96■■□□□ 1.75
COL7A1-209ENST00000474432 GGNBP2Q9H3C7 697 aa25.96■■□□□ 1.75
COL7A1-209ENST00000474432 FAM208AQ9UK61 1670 aaKnown RBP25.95■■□□□ 1.74
COL7A1-209ENST00000474432 KIF20BQ96Q89 1820 aa25.95■■□□□ 1.74
COL7A1-209ENST00000474432 PLSCR1O15162 318 aa25.94■■□□□ 1.74
COL7A1-209ENST00000474432 HOXC9P31274 260 aa25.94■■□□□ 1.74
COL7A1-209ENST00000474432 RGPD2P0DJD1 1756 aa25.94■■□□□ 1.74
COL7A1-209ENST00000474432 IL2RBP14784 551 aa25.93■■□□□ 1.74
COL7A1-209ENST00000474432 CCER1Q8TC90 406 aaPredicted RBP25.91■■□□□ 1.74
COL7A1-209ENST00000474432 LTV1Q96GA3 475 aaPredicted RBP25.91■■□□□ 1.74
COL7A1-209ENST00000474432 RRS1Q15050 365 aaKnown RBP25.9■■□□□ 1.74
COL7A1-209ENST00000474432 PROM2Q8N271 834 aa25.9■■□□□ 1.74
COL7A1-209ENST00000474432 NHSQ6T4R5 1651 aa25.89■■□□□ 1.73
COL7A1-209ENST00000474432 KCNQ2O43526 872 aa25.88■■□□□ 1.73
COL7A1-209ENST00000474432 AMPHP49418 695 aa25.88■■□□□ 1.73
COL7A1-209ENST00000474432 RTL1A6NKG5 1358 aa25.87■■□□□ 1.73
COL7A1-209ENST00000474432 NSD3Q9BZ95 1437 aa25.87■■□□□ 1.73
COL7A1-209ENST00000474432 NBPF14Q5TI25 921 aa25.84■■□□□ 1.73
COL7A1-209ENST00000474432 SHANK3Q9BYB0 1731 aa25.84■■□□□ 1.73
COL7A1-209ENST00000474432 HSPA5P11021 654 aaKnown RBP25.83■■□□□ 1.73
COL7A1-209ENST00000474432 ANO8Q9HCE9 1232 aaPredicted RBP25.83■■□□□ 1.73
COL7A1-209ENST00000474432 ACSBG1Q96GR2 724 aa25.82■■□□□ 1.72
COL7A1-209ENST00000474432 EIF4G2P78344 907 aaKnown RBP eCLIP25.81■■□□□ 1.72
COL7A1-209ENST00000474432 NBPF6Q5VWK0 638 aa25.81■■□□□ 1.72
COL7A1-209ENST00000474432 NBPF4Q96M43 638 aa25.81■■□□□ 1.72
COL7A1-209ENST00000474432 MEGF6O75095 1541 aa25.81■■□□□ 1.72
COL7A1-209ENST00000474432 BTAF1O14981 1849 aa25.8■■□□□ 1.72
COL7A1-209ENST00000474432 HSP90AB2PQ58FF8 381 aa25.8■■□□□ 1.72
COL7A1-209ENST00000474432 INSRP06213 1382 aa25.8■■□□□ 1.72
COL7A1-209ENST00000474432 TXNRD1Q16881 649 aa25.79■■□□□ 1.72
COL7A1-209ENST00000474432 ANKRD26Q9UPS8 1709 aa25.78■■□□□ 1.72
COL7A1-209ENST00000474432 KIF24Q5T7B8 1368 aa25.78■■□□□ 1.72
COL7A1-209ENST00000474432 KAT6BQ8WYB5 2073 aa25.78■■□□□ 1.72
COL7A1-209ENST00000474432 FLT4P35916 1363 aa25.77■■□□□ 1.72
COL7A1-209ENST00000474432 CASZ1Q86V15 1759 aa25.77■■□□□ 1.72
COL7A1-209ENST00000474432 DDX54Q8TDD1 881 aaKnown RBP25.76■■□□□ 1.71
COL7A1-209ENST00000474432 EMILIN1Q9Y6C2 1016 aa25.76■■□□□ 1.71
COL7A1-209ENST00000474432 USHBP1Q8N6Y0 703 aa25.75■■□□□ 1.71
COL7A1-209ENST00000474432 MAP2P11137 1827 aaKnown RBP25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms