RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 CD163L1Q9NR16 1453 aa28.72■■■□□ 2.19
PDLIM4-206ENST00000474421 WDR17Q8IZU2 1322 aa28.71■■■□□ 2.19
PDLIM4-206ENST00000474421 NFAT5O94916 1531 aa28.71■■■□□ 2.19
PDLIM4-206ENST00000474421 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.71■■■□□ 2.19
PDLIM4-206ENST00000474421 ABCC6O95255 1503 aa28.7■■■□□ 2.19
PDLIM4-206ENST00000474421 SLC12A5Q9H2X9 1139 aa28.7■■■□□ 2.18
PDLIM4-206ENST00000474421 AXIN2Q9Y2T1 843 aa28.7■■■□□ 2.18
PDLIM4-206ENST00000474421 USP54Q70EL1 1684 aa28.7■■■□□ 2.18
PDLIM4-206ENST00000474421 NINLQ9Y2I6 1382 aa28.69■■■□□ 2.18
PDLIM4-206ENST00000474421 EDC4Q6P2E9 1401 aaKnown RBP28.69■■■□□ 2.18
PDLIM4-206ENST00000474421 ST20-MTHFSA0A0A6YYL1 179 aa28.68■■■□□ 2.18
PDLIM4-206ENST00000474421 CDCA7Q9BWT1 371 aaPredicted RBP28.68■■■□□ 2.18
PDLIM4-206ENST00000474421 RGPD5Q99666 1765 aa28.67■■■□□ 2.18
PDLIM4-206ENST00000474421 PARD3Q8TEW0 1356 aa28.67■■■□□ 2.18
PDLIM4-206ENST00000474421 TESK2Q96S53 571 aa28.67■■■□□ 2.18
PDLIM4-206ENST00000474421 APBA3O96018 575 aa28.66■■■□□ 2.18
PDLIM4-206ENST00000474421 CSB-PGBD3P0DP91 1061 aa28.66■■■□□ 2.18
PDLIM4-206ENST00000474421 NME9Q86XW9 330 aa28.65■■■□□ 2.18
PDLIM4-206ENST00000474421 A0A1W2PP64 1363 aa28.64■■■□□ 2.18
PDLIM4-206ENST00000474421 DDB1Q16531 1140 aa28.64■■■□□ 2.18
PDLIM4-206ENST00000474421 CARD10Q9BWT7 1032 aa28.64■■■□□ 2.18
PDLIM4-206ENST00000474421 EZH2Q15910 746 aaKnown RBP28.63■■■□□ 2.17
PDLIM4-206ENST00000474421 CAMKK2Q96RR4 588 aa28.63■■■□□ 2.17
PDLIM4-206ENST00000474421 WNK3Q9BYP7 1800 aa28.63■■■□□ 2.17
PDLIM4-206ENST00000474421 LRRC37A3O60309 1634 aa28.62■■■□□ 2.17
PDLIM4-206ENST00000474421 OVOS2A0A0G2JMS6 1433 aa28.62■■■□□ 2.17
PDLIM4-206ENST00000474421 OVOS2A0A0J9YW53 1432 aa28.62■■■□□ 2.17
PDLIM4-206ENST00000474421 OVOS2Q6IE36 1432 aa28.62■■■□□ 2.17
PDLIM4-206ENST00000474421 PSDA5PKW4 1024 aaPredicted RBP28.59■■■□□ 2.17
PDLIM4-206ENST00000474421 TIMELESSQ9UNS1 1208 aa28.59■■■□□ 2.17
PDLIM4-206ENST00000474421 LTN1O94822 1766 aa28.59■■■□□ 2.17
PDLIM4-206ENST00000474421 CCDC7Q96M83 1385 aa28.59■■■□□ 2.17
PDLIM4-206ENST00000474421 PEAK1Q9H792 1746 aa28.57■■■□□ 2.16
PDLIM4-206ENST00000474421 CLSPNQ9HAW4 1339 aa28.57■■■□□ 2.16
PDLIM4-206ENST00000474421 USP47Q96K76 1375 aa28.57■■■□□ 2.16
PDLIM4-206ENST00000474421 LRP5O75197 1615 aa28.57■■■□□ 2.16
PDLIM4-206ENST00000474421 TMF1P82094 1093 aa28.56■■■□□ 2.16
PDLIM4-206ENST00000474421 SBF2Q86WG5 1849 aa28.54■■■□□ 2.16
PDLIM4-206ENST00000474421 RREB1Q92766 1687 aa28.54■■■□□ 2.16
PDLIM4-206ENST00000474421 ERBB3P21860 1342 aa28.53■■■□□ 2.16
PDLIM4-206ENST00000474421 R3HDM1Q15032 1099 aaKnown RBP28.53■■■□□ 2.16
PDLIM4-206ENST00000474421 EXOC5O00471 708 aa28.52■■■□□ 2.16
PDLIM4-206ENST00000474421 CDCA8Q53HL2 280 aa28.52■■■□□ 2.16
PDLIM4-206ENST00000474421 BCL9O00512 1426 aa28.52■■■□□ 2.16
PDLIM4-206ENST00000474421 ANKRD36BQ8N2N9 1353 aa28.51■■■□□ 2.16
PDLIM4-206ENST00000474421 MARCH10Q8NA82 808 aaPredicted RBP28.5■■■□□ 2.15
PDLIM4-206ENST00000474421 COG3Q96JB2 828 aa28.5■■■□□ 2.15
PDLIM4-206ENST00000474421 NLRP2Q9NX02 1062 aa28.5■■■□□ 2.15
PDLIM4-206ENST00000474421 NBPF14Q5TI25 921 aa28.49■■■□□ 2.15
PDLIM4-206ENST00000474421 BCL11BQ9C0K0 894 aaPredicted RBP28.49■■■□□ 2.15
PDLIM4-206ENST00000474421 NUP188Q5SRE5 1749 aa28.49■■■□□ 2.15
PDLIM4-206ENST00000474421 RGPD3A6NKT7 1758 aaPredicted RBP28.48■■■□□ 2.15
PDLIM4-206ENST00000474421 RGPD4Q7Z3J3 1758 aa28.48■■■□□ 2.15
PDLIM4-206ENST00000474421 ANKRD24Q8TF21 1146 aa28.48■■■□□ 2.15
PDLIM4-206ENST00000474421 PCGF6Q9BYE7 350 aa28.48■■■□□ 2.15
PDLIM4-206ENST00000474421 PLSCR1O15162 318 aa28.47■■■□□ 2.15
PDLIM4-206ENST00000474421 TNS2Q63HR2 1409 aa28.46■■■□□ 2.15
PDLIM4-206ENST00000474421 IP6K1Q92551 441 aa28.46■■■□□ 2.15
PDLIM4-206ENST00000474421 IL2RBP14784 551 aa28.43■■■□□ 2.14
PDLIM4-206ENST00000474421 FAM208AQ9UK61 1670 aaKnown RBP28.42■■■□□ 2.14
PDLIM4-206ENST00000474421 AMPHP49418 695 aa28.38■■■□□ 2.13
PDLIM4-206ENST00000474421 MAP3K19Q56UN5 1328 aa28.38■■■□□ 2.13
PDLIM4-206ENST00000474421 FYB1O15117 783 aa28.36■■■□□ 2.13
PDLIM4-206ENST00000474421 HOXC9P31274 260 aa28.35■■■□□ 2.13
PDLIM4-206ENST00000474421 PTF1AQ7RTS3 328 aa28.35■■■□□ 2.13
PDLIM4-206ENST00000474421 LTV1Q96GA3 475 aaPredicted RBP28.35■■■□□ 2.13
PDLIM4-206ENST00000474421 RTL1A6NKG5 1358 aa28.35■■■□□ 2.13
PDLIM4-206ENST00000474421 GGNBP2Q9H3C7 697 aa28.33■■■□□ 2.13
PDLIM4-206ENST00000474421 KIF20BQ96Q89 1820 aa28.32■■■□□ 2.12
PDLIM4-206ENST00000474421 NHSQ6T4R5 1651 aa28.32■■■□□ 2.12
PDLIM4-206ENST00000474421 KAT6BQ8WYB5 2073 aa28.31■■■□□ 2.12
PDLIM4-206ENST00000474421 FBLN1P23142 703 aa28.29■■■□□ 2.12
PDLIM4-206ENST00000474421 MYOM1P52179 1685 aa28.29■■■□□ 2.12
PDLIM4-206ENST00000474421 KCNQ2O43526 872 aa28.27■■■□□ 2.12
PDLIM4-206ENST00000474421 RRS1Q15050 365 aaKnown RBP28.27■■■□□ 2.12
PDLIM4-206ENST00000474421 PROM2Q8N271 834 aa28.27■■■□□ 2.12
PDLIM4-206ENST00000474421 TXNRD1Q16881 649 aa28.26■■■□□ 2.11
PDLIM4-206ENST00000474421 CCER1Q8TC90 406 aaPredicted RBP28.26■■■□□ 2.11
PDLIM4-206ENST00000474421 ACSBG1Q96GR2 724 aa28.26■■■□□ 2.11
PDLIM4-206ENST00000474421 SMG6Q86US8 1419 aaKnown RBP28.26■■■□□ 2.11
PDLIM4-206ENST00000474421 KIF24Q5T7B8 1368 aa28.24■■■□□ 2.11
PDLIM4-206ENST00000474421 SPON1Q9HCB6 807 aa28.24■■■□□ 2.11
PDLIM4-206ENST00000474421 NSD3Q9BZ95 1437 aa28.24■■■□□ 2.11
PDLIM4-206ENST00000474421 DDX54Q8TDD1 881 aaKnown RBP28.23■■■□□ 2.11
PDLIM4-206ENST00000474421 CARD14Q9BXL6 1004 aa28.23■■■□□ 2.11
PDLIM4-206ENST00000474421 ANO8Q9HCE9 1232 aaPredicted RBP28.23■■■□□ 2.11
PDLIM4-206ENST00000474421 RGPD2P0DJD1 1756 aa28.23■■■□□ 2.11
PDLIM4-206ENST00000474421 BTAF1O14981 1849 aa28.21■■■□□ 2.11
PDLIM4-206ENST00000474421 STK32BQ9NY57 414 aa28.21■■■□□ 2.11
PDLIM4-206ENST00000474421 FLT4P35916 1363 aa28.21■■■□□ 2.11
PDLIM4-206ENST00000474421 CGNL1Q0VF96 1302 aa28.2■■■□□ 2.11
PDLIM4-206ENST00000474421 EIF4G2P78344 907 aaKnown RBP eCLIP28.2■■■□□ 2.1
PDLIM4-206ENST00000474421 INSRP06213 1382 aa28.2■■■□□ 2.1
PDLIM4-206ENST00000474421 ZCRB1Q8TBF4 217 aaKnown RBP28.19■■■□□ 2.1
PDLIM4-206ENST00000474421 NBPF6Q5VWK0 638 aa28.17■■■□□ 2.1
PDLIM4-206ENST00000474421 NBPF4Q96M43 638 aa28.17■■■□□ 2.1
PDLIM4-206ENST00000474421 CASZ1Q86V15 1759 aa28.16■■■□□ 2.1
PDLIM4-206ENST00000474421 SLC15A2Q16348 729 aa28.16■■■□□ 2.1
PDLIM4-206ENST00000474421 HSP90AB2PQ58FF8 381 aa28.16■■■□□ 2.1
PDLIM4-206ENST00000474421 RAPGEF4Q8WZA2 1011 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 627.4 ms