RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TRIM37O94972 964 aa26.66■■□□□ 1.86
CCDC88B-206ENST00000473405 KCNH5Q8NCM2 988 aa26.66■■□□□ 1.86
CCDC88B-206ENST00000473405 PDE3BQ13370 1112 aa26.65■■□□□ 1.86
CCDC88B-206ENST00000473405 SBF2Q86WG5 1849 aa26.65■■□□□ 1.86
CCDC88B-206ENST00000473405 WDR17Q8IZU2 1322 aa26.65■■□□□ 1.86
CCDC88B-206ENST00000473405 USP31Q70CQ4 1352 aa26.64■■□□□ 1.86
CCDC88B-206ENST00000473405 SOX12O15370 315 aa26.63■■□□□ 1.85
CCDC88B-206ENST00000473405 TESK2Q96S53 571 aa26.63■■□□□ 1.85
CCDC88B-206ENST00000473405 EDC4Q6P2E9 1401 aaKnown RBP26.63■■□□□ 1.85
CCDC88B-206ENST00000473405 NUP188Q5SRE5 1749 aa26.62■■□□□ 1.85
CCDC88B-206ENST00000473405 A0A1W2PP64 1363 aa26.62■■□□□ 1.85
CCDC88B-206ENST00000473405 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.62■■□□□ 1.85
CCDC88B-206ENST00000473405 SLC12A5Q9H2X9 1139 aa26.62■■□□□ 1.85
CCDC88B-206ENST00000473405 TMC1Q8TDI8 760 aa26.61■■□□□ 1.85
CCDC88B-206ENST00000473405 TOM1L2Q6ZVM7 507 aa26.6■■□□□ 1.85
CCDC88B-206ENST00000473405 NME9Q86XW9 330 aa26.6■■□□□ 1.85
CCDC88B-206ENST00000473405 PUS7Q96PZ0 661 aaKnown RBP26.6■■□□□ 1.85
CCDC88B-206ENST00000473405 EZH2Q15910 746 aaKnown RBP26.59■■□□□ 1.85
CCDC88B-206ENST00000473405 CAMKK2Q96RR4 588 aa26.59■■□□□ 1.85
CCDC88B-206ENST00000473405 OVOS2A0A0G2JMS6 1433 aa26.58■■□□□ 1.85
CCDC88B-206ENST00000473405 OVOS2A0A0J9YW53 1432 aa26.58■■□□□ 1.85
CCDC88B-206ENST00000473405 OVOS2Q6IE36 1432 aa26.58■■□□□ 1.85
CCDC88B-206ENST00000473405 ST20-MTHFSA0A0A6YYL1 179 aa26.58■■□□□ 1.85
CCDC88B-206ENST00000473405 PSDA5PKW4 1024 aaPredicted RBP26.58■■□□□ 1.85
CCDC88B-206ENST00000473405 RGPD3A6NKT7 1758 aaPredicted RBP26.58■■□□□ 1.85
CCDC88B-206ENST00000473405 RGPD4Q7Z3J3 1758 aa26.58■■□□□ 1.85
CCDC88B-206ENST00000473405 PARD3Q8TEW0 1356 aa26.58■■□□□ 1.84
CCDC88B-206ENST00000473405 HDGFL2Q7Z4V5 671 aaPredicted RBP26.57■■□□□ 1.84
CCDC88B-206ENST00000473405 APBA3O96018 575 aa26.56■■□□□ 1.84
CCDC88B-206ENST00000473405 NINLQ9Y2I6 1382 aa26.56■■□□□ 1.84
CCDC88B-206ENST00000473405 CARD10Q9BWT7 1032 aa26.54■■□□□ 1.84
CCDC88B-206ENST00000473405 TERF2IPQ9NYB0 399 aa26.54■■□□□ 1.84
CCDC88B-206ENST00000473405 DDB1Q16531 1140 aa26.53■■□□□ 1.84
CCDC88B-206ENST00000473405 USP47Q96K76 1375 aa26.51■■□□□ 1.83
CCDC88B-206ENST00000473405 CSB-PGBD3P0DP91 1061 aa26.5■■□□□ 1.83
CCDC88B-206ENST00000473405 R3HDM1Q15032 1099 aaKnown RBP26.5■■□□□ 1.83
CCDC88B-206ENST00000473405 ERBB3P21860 1342 aa26.49■■□□□ 1.83
CCDC88B-206ENST00000473405 C11orf95C9JLR9 678 aaPredicted RBP26.49■■□□□ 1.83
CCDC88B-206ENST00000473405 CDCA7Q9BWT1 371 aaPredicted RBP26.49■■□□□ 1.83
CCDC88B-206ENST00000473405 BCL9O00512 1426 aa26.48■■□□□ 1.83
CCDC88B-206ENST00000473405 CCDC7Q96M83 1385 aa26.48■■□□□ 1.83
CCDC88B-206ENST00000473405 TNS2Q63HR2 1409 aa26.48■■□□□ 1.83
CCDC88B-206ENST00000473405 FAM208AQ9UK61 1670 aaKnown RBP26.47■■□□□ 1.83
CCDC88B-206ENST00000473405 MARCH10Q8NA82 808 aaPredicted RBP26.47■■□□□ 1.83
CCDC88B-206ENST00000473405 MYOM1P52179 1685 aa26.45■■□□□ 1.82
CCDC88B-206ENST00000473405 SLC24A1O60721 1099 aa26.45■■□□□ 1.82
CCDC88B-206ENST00000473405 ANKRD36BQ8N2N9 1353 aa26.45■■□□□ 1.82
CCDC88B-206ENST00000473405 PTF1AQ7RTS3 328 aa26.43■■□□□ 1.82
CCDC88B-206ENST00000473405 NHSQ6T4R5 1651 aa26.42■■□□□ 1.82
CCDC88B-206ENST00000473405 KIF20BQ96Q89 1820 aa26.42■■□□□ 1.82
CCDC88B-206ENST00000473405 ANKRD24Q8TF21 1146 aa26.4■■□□□ 1.82
CCDC88B-206ENST00000473405 TMF1P82094 1093 aa26.39■■□□□ 1.82
CCDC88B-206ENST00000473405 BCL11BQ9C0K0 894 aaPredicted RBP26.39■■□□□ 1.82
CCDC88B-206ENST00000473405 NLRP2Q9NX02 1062 aa26.39■■□□□ 1.82
CCDC88B-206ENST00000473405 RGPD2P0DJD1 1756 aa26.38■■□□□ 1.81
CCDC88B-206ENST00000473405 CLSPNQ9HAW4 1339 aa26.38■■□□□ 1.81
CCDC88B-206ENST00000473405 EXOC5O00471 708 aa26.37■■□□□ 1.81
CCDC88B-206ENST00000473405 PLSCR1O15162 318 aa26.36■■□□□ 1.81
CCDC88B-206ENST00000473405 IP6K1Q92551 441 aa26.35■■□□□ 1.81
CCDC88B-206ENST00000473405 COG3Q96JB2 828 aa26.35■■□□□ 1.81
CCDC88B-206ENST00000473405 TIMELESSQ9UNS1 1208 aa26.35■■□□□ 1.81
CCDC88B-206ENST00000473405 MAP3K19Q56UN5 1328 aa26.34■■□□□ 1.81
CCDC88B-206ENST00000473405 IL2RBP14784 551 aa26.33■■□□□ 1.81
CCDC88B-206ENST00000473405 CASZ1Q86V15 1759 aa26.33■■□□□ 1.8
CCDC88B-206ENST00000473405 SHANK3Q9BYB0 1731 aa26.32■■□□□ 1.8
CCDC88B-206ENST00000473405 FBLN1P23142 703 aa26.32■■□□□ 1.8
CCDC88B-206ENST00000473405 NBPF14Q5TI25 921 aa26.32■■□□□ 1.8
CCDC88B-206ENST00000473405 PCGF6Q9BYE7 350 aa26.32■■□□□ 1.8
CCDC88B-206ENST00000473405 BTAF1O14981 1849 aa26.32■■□□□ 1.8
CCDC88B-206ENST00000473405 FYB1O15117 783 aa26.29■■□□□ 1.8
CCDC88B-206ENST00000473405 HOXC9P31274 260 aa26.29■■□□□ 1.8
CCDC88B-206ENST00000473405 PROM2Q8N271 834 aa26.29■■□□□ 1.8
CCDC88B-206ENST00000473405 RTL1A6NKG5 1358 aa26.29■■□□□ 1.8
CCDC88B-206ENST00000473405 KCNQ2O43526 872 aa26.28■■□□□ 1.8
CCDC88B-206ENST00000473405 CDCA8Q53HL2 280 aa26.28■■□□□ 1.8
CCDC88B-206ENST00000473405 ANO8Q9HCE9 1232 aaPredicted RBP26.28■■□□□ 1.8
CCDC88B-206ENST00000473405 LTV1Q96GA3 475 aaPredicted RBP26.27■■□□□ 1.8
CCDC88B-206ENST00000473405 GGNBP2Q9H3C7 697 aa26.27■■□□□ 1.8
CCDC88B-206ENST00000473405 PAPPAQ13219 1627 aa26.25■■□□□ 1.79
CCDC88B-206ENST00000473405 AMPHP49418 695 aa26.24■■□□□ 1.79
CCDC88B-206ENST00000473405 RRS1Q15050 365 aaKnown RBP26.24■■□□□ 1.79
CCDC88B-206ENST00000473405 DOT1LQ8TEK3 1739 aa26.24■■□□□ 1.79
CCDC88B-206ENST00000473405 ANKRD26Q9UPS8 1709 aa26.24■■□□□ 1.79
CCDC88B-206ENST00000473405 KAT6BQ8WYB5 2073 aa26.24■■□□□ 1.79
CCDC88B-206ENST00000473405 ACSBG1Q96GR2 724 aa26.23■■□□□ 1.79
CCDC88B-206ENST00000473405 MEGF6O75095 1541 aa26.23■■□□□ 1.79
CCDC88B-206ENST00000473405 NSD3Q9BZ95 1437 aa26.22■■□□□ 1.79
CCDC88B-206ENST00000473405 CARD14Q9BXL6 1004 aa26.22■■□□□ 1.79
CCDC88B-206ENST00000473405 TXNRD1Q16881 649 aa26.21■■□□□ 1.79
CCDC88B-206ENST00000473405 PDGFDQ9GZP0 370 aaPredicted RBP26.16■■□□□ 1.78
CCDC88B-206ENST00000473405 SMG6Q86US8 1419 aaKnown RBP26.15■■□□□ 1.78
CCDC88B-206ENST00000473405 NBPF6Q5VWK0 638 aa26.15■■□□□ 1.78
CCDC88B-206ENST00000473405 DDX54Q8TDD1 881 aaKnown RBP26.15■■□□□ 1.78
CCDC88B-206ENST00000473405 NBPF4Q96M43 638 aa26.15■■□□□ 1.78
CCDC88B-206ENST00000473405 SPON1Q9HCB6 807 aa26.15■■□□□ 1.78
CCDC88B-206ENST00000473405 INSRP06213 1382 aa26.15■■□□□ 1.78
CCDC88B-206ENST00000473405 FLT4P35916 1363 aa26.15■■□□□ 1.78
CCDC88B-206ENST00000473405 KIF24Q5T7B8 1368 aa26.15■■□□□ 1.78
CCDC88B-206ENST00000473405 MAP2P11137 1827 aaKnown RBP26.13■■□□□ 1.77
CCDC88B-206ENST00000473405 LY75O60449 1722 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms