RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 ARHGEF25Q86VW2 580 aa28.04■■■□□ 2.08
COL9A3-210ENST00000472880 CAMKK2Q96RR4 588 aa28.04■■■□□ 2.08
COL9A3-210ENST00000472880 OVOS2A0A0G2JMS6 1433 aa28.02■■■□□ 2.08
COL9A3-210ENST00000472880 OVOS2A0A0J9YW53 1432 aa28.02■■■□□ 2.08
COL9A3-210ENST00000472880 OVOS2Q6IE36 1432 aa28.02■■■□□ 2.08
COL9A3-210ENST00000472880 R3HDM1Q15032 1099 aaKnown RBP28.02■■■□□ 2.08
COL9A3-210ENST00000472880 AXIN2Q9Y2T1 843 aa28.02■■■□□ 2.08
COL9A3-210ENST00000472880 RREB1Q92766 1687 aa28.02■■■□□ 2.08
COL9A3-210ENST00000472880 C11orf95C9JLR9 678 aaPredicted RBP28.01■■■□□ 2.07
COL9A3-210ENST00000472880 RGPD5Q99666 1765 aa28.01■■■□□ 2.07
COL9A3-210ENST00000472880 ABCC6O95255 1503 aa28■■■□□ 2.07
COL9A3-210ENST00000472880 USP54Q70EL1 1684 aa28■■■□□ 2.07
COL9A3-210ENST00000472880 PEAK1Q9H792 1746 aa27.99■■■□□ 2.07
COL9A3-210ENST00000472880 DDB1Q16531 1140 aa27.99■■■□□ 2.07
COL9A3-210ENST00000472880 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.99■■■□□ 2.07
COL9A3-210ENST00000472880 TMC1Q8TDI8 760 aa27.99■■■□□ 2.07
COL9A3-210ENST00000472880 CD163L1Q9NR16 1453 aa27.99■■■□□ 2.07
COL9A3-210ENST00000472880 CSB-PGBD3P0DP91 1061 aa27.98■■■□□ 2.07
COL9A3-210ENST00000472880 NUP188Q5SRE5 1749 aa27.98■■■□□ 2.07
COL9A3-210ENST00000472880 HDGFL2Q7Z4V5 671 aaPredicted RBP27.97■■■□□ 2.07
COL9A3-210ENST00000472880 USP31Q70CQ4 1352 aa27.97■■■□□ 2.07
COL9A3-210ENST00000472880 CDCA7Q9BWT1 371 aaPredicted RBP27.95■■■□□ 2.06
COL9A3-210ENST00000472880 EDC4Q6P2E9 1401 aaKnown RBP27.93■■■□□ 2.06
COL9A3-210ENST00000472880 NME9Q86XW9 330 aa27.93■■■□□ 2.06
COL9A3-210ENST00000472880 CARD10Q9BWT7 1032 aa27.93■■■□□ 2.06
COL9A3-210ENST00000472880 SLC12A5Q9H2X9 1139 aa27.92■■■□□ 2.06
COL9A3-210ENST00000472880 TERF2IPQ9NYB0 399 aa27.92■■■□□ 2.06
COL9A3-210ENST00000472880 SBF2Q86WG5 1849 aa27.92■■■□□ 2.06
COL9A3-210ENST00000472880 A0A1W2PP64 1363 aa27.91■■■□□ 2.06
COL9A3-210ENST00000472880 CCDC7Q96M83 1385 aa27.91■■■□□ 2.06
COL9A3-210ENST00000472880 TRIM26Q12899 539 aaPredicted RBP27.91■■■□□ 2.06
COL9A3-210ENST00000472880 LTN1O94822 1766 aa27.91■■■□□ 2.06
COL9A3-210ENST00000472880 PUS7Q96PZ0 661 aaKnown RBP27.9■■■□□ 2.06
COL9A3-210ENST00000472880 RGPD3A6NKT7 1758 aaPredicted RBP27.9■■■□□ 2.06
COL9A3-210ENST00000472880 RGPD4Q7Z3J3 1758 aa27.9■■■□□ 2.06
COL9A3-210ENST00000472880 NBPF14Q5TI25 921 aa27.89■■■□□ 2.06
COL9A3-210ENST00000472880 NINLQ9Y2I6 1382 aa27.86■■■□□ 2.05
COL9A3-210ENST00000472880 MARCH10Q8NA82 808 aaPredicted RBP27.85■■■□□ 2.05
COL9A3-210ENST00000472880 ERBB3P21860 1342 aa27.85■■■□□ 2.05
COL9A3-210ENST00000472880 BCL9O00512 1426 aa27.84■■■□□ 2.05
COL9A3-210ENST00000472880 TNS2Q63HR2 1409 aa27.84■■■□□ 2.05
COL9A3-210ENST00000472880 ST20-MTHFSA0A0A6YYL1 179 aa27.84■■■□□ 2.05
COL9A3-210ENST00000472880 TESK2Q96S53 571 aa27.84■■■□□ 2.05
COL9A3-210ENST00000472880 BCL11BQ9C0K0 894 aaPredicted RBP27.84■■■□□ 2.05
COL9A3-210ENST00000472880 EXOC5O00471 708 aa27.82■■■□□ 2.04
COL9A3-210ENST00000472880 SLC24A1O60721 1099 aa27.82■■■□□ 2.04
COL9A3-210ENST00000472880 PLSCR1O15162 318 aa27.81■■■□□ 2.04
COL9A3-210ENST00000472880 NLRP2Q9NX02 1062 aa27.81■■■□□ 2.04
COL9A3-210ENST00000472880 ANKRD24Q8TF21 1146 aa27.78■■■□□ 2.04
COL9A3-210ENST00000472880 PTF1AQ7RTS3 328 aa27.77■■■□□ 2.04
COL9A3-210ENST00000472880 FAM208AQ9UK61 1670 aaKnown RBP27.75■■■□□ 2.03
COL9A3-210ENST00000472880 USP47Q96K76 1375 aa27.74■■■□□ 2.03
COL9A3-210ENST00000472880 IL2RBP14784 551 aa27.74■■■□□ 2.03
COL9A3-210ENST00000472880 COG3Q96JB2 828 aa27.74■■■□□ 2.03
COL9A3-210ENST00000472880 NHSQ6T4R5 1651 aa27.74■■■□□ 2.03
COL9A3-210ENST00000472880 ANKRD36BQ8N2N9 1353 aa27.73■■■□□ 2.03
COL9A3-210ENST00000472880 TMF1P82094 1093 aa27.72■■■□□ 2.03
COL9A3-210ENST00000472880 IP6K1Q92551 441 aa27.7■■■□□ 2.02
COL9A3-210ENST00000472880 ANO8Q9HCE9 1232 aaPredicted RBP27.7■■■□□ 2.02
COL9A3-210ENST00000472880 SPON1Q9HCB6 807 aa27.69■■■□□ 2.02
COL9A3-210ENST00000472880 LTV1Q96GA3 475 aaPredicted RBP27.67■■■□□ 2.02
COL9A3-210ENST00000472880 KCNQ2O43526 872 aa27.66■■■□□ 2.02
COL9A3-210ENST00000472880 TXNRD1Q16881 649 aa27.66■■■□□ 2.02
COL9A3-210ENST00000472880 PROM2Q8N271 834 aa27.66■■■□□ 2.02
COL9A3-210ENST00000472880 MAP3K19Q56UN5 1328 aa27.66■■■□□ 2.02
COL9A3-210ENST00000472880 CASZ1Q86V15 1759 aa27.65■■■□□ 2.02
COL9A3-210ENST00000472880 ACSBG1Q96GR2 724 aa27.65■■■□□ 2.02
COL9A3-210ENST00000472880 PPP1R1BQ9UD71 204 aaPredicted RBP27.65■■■□□ 2.02
COL9A3-210ENST00000472880 AMPHP49418 695 aa27.64■■■□□ 2.02
COL9A3-210ENST00000472880 HOXC9P31274 260 aa27.63■■■□□ 2.01
COL9A3-210ENST00000472880 CDCA8Q53HL2 280 aa27.62■■■□□ 2.01
COL9A3-210ENST00000472880 STK32BQ9NY57 414 aa27.62■■■□□ 2.01
COL9A3-210ENST00000472880 RTL1A6NKG5 1358 aa27.61■■■□□ 2.01
COL9A3-210ENST00000472880 BTAF1O14981 1849 aa27.61■■■□□ 2.01
COL9A3-210ENST00000472880 KIF20BQ96Q89 1820 aa27.6■■■□□ 2.01
COL9A3-210ENST00000472880 FBLN1P23142 703 aa27.59■■■□□ 2.01
COL9A3-210ENST00000472880 GGNBP2Q9H3C7 697 aa27.58■■■□□ 2.01
COL9A3-210ENST00000472880 FYB1O15117 783 aa27.57■■■□□ 2
COL9A3-210ENST00000472880 TIMELESSQ9UNS1 1208 aa27.57■■■□□ 2
COL9A3-210ENST00000472880 RGPD2P0DJD1 1756 aa27.56■■■□□ 2
COL9A3-210ENST00000472880 SLC15A2Q16348 729 aa27.56■■■□□ 2
COL9A3-210ENST00000472880 DDX54Q8TDD1 881 aaKnown RBP27.56■■■□□ 2
COL9A3-210ENST00000472880 MYOM1P52179 1685 aa27.56■■■□□ 2
COL9A3-210ENST00000472880 RRS1Q15050 365 aaKnown RBP27.55■■■□□ 2
COL9A3-210ENST00000472880 SMG6Q86US8 1419 aaKnown RBP27.55■■■□□ 2
COL9A3-210ENST00000472880 PAPPAQ13219 1627 aa27.54■■■□□ 2
COL9A3-210ENST00000472880 PDGFDQ9GZP0 370 aaPredicted RBP27.54■■■□□ 2
COL9A3-210ENST00000472880 CLSPNQ9HAW4 1339 aa27.54■■■□□ 2
COL9A3-210ENST00000472880 ZBTB7AO95365 584 aa27.53■■■□□ 2
COL9A3-210ENST00000472880 MEGF6O75095 1541 aa27.52■■■□□ 2
COL9A3-210ENST00000472880 DOT1LQ8TEK3 1739 aa27.51■■□□□ 1.99
COL9A3-210ENST00000472880 SHANK3Q9BYB0 1731 aa27.51■■□□□ 1.99
COL9A3-210ENST00000472880 PCGF6Q9BYE7 350 aa27.51■■□□□ 1.99
COL9A3-210ENST00000472880 KAT6BQ8WYB5 2073 aa27.51■■□□□ 1.99
COL9A3-210ENST00000472880 NSD3Q9BZ95 1437 aa27.49■■□□□ 1.99
COL9A3-210ENST00000472880 ZCRB1Q8TBF4 217 aaKnown RBP27.48■■□□□ 1.99
COL9A3-210ENST00000472880 FLT4P35916 1363 aa27.48■■□□□ 1.99
COL9A3-210ENST00000472880 SYTL4Q96C24 671 aaPredicted RBP27.47■■□□□ 1.99
COL9A3-210ENST00000472880 ATF5Q9Y2D1 282 aaPredicted RBP27.47■■□□□ 1.99
COL9A3-210ENST00000472880 DCAF8L1A6NGE4 600 aa27.46■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms