RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 DDB1Q16531 1140 aa12.98□□□□□ -0.33
SF3A1-206ENST00000471037 CCER1Q8TC90 406 aaPredicted RBP12.98□□□□□ -0.33
SF3A1-206ENST00000471037 SBF2Q86WG5 1849 aa12.97□□□□□ -0.33
SF3A1-206ENST00000471037 AKAP12Q02952 1782 aa12.97□□□□□ -0.33
SF3A1-206ENST00000471037 ZBTB7CA1YPR0 619 aa12.97□□□□□ -0.33
SF3A1-206ENST00000471037 TOM1L2Q6ZVM7 507 aa12.97□□□□□ -0.33
SF3A1-206ENST00000471037 ARHGEF25Q86VW2 580 aa12.97□□□□□ -0.33
SF3A1-206ENST00000471037 ZNF692Q9BU19 519 aaPredicted RBP12.97□□□□□ -0.33
SF3A1-206ENST00000471037 CDCA7Q9BWT1 371 aaPredicted RBP12.97□□□□□ -0.33
SF3A1-206ENST00000471037 AXIN2Q9Y2T1 843 aa12.97□□□□□ -0.33
SF3A1-206ENST00000471037 ABCC6O95255 1503 aa12.97□□□□□ -0.33
SF3A1-206ENST00000471037 TTC21BQ7Z4L5 1316 aa12.96□□□□□ -0.33
SF3A1-206ENST00000471037 TTC21AQ8NDW8 1320 aa12.96□□□□□ -0.33
SF3A1-206ENST00000471037 KCNH5Q8NCM2 988 aa12.96□□□□□ -0.33
SF3A1-206ENST00000471037 BCL11BQ9C0K0 894 aaPredicted RBP12.96□□□□□ -0.33
SF3A1-206ENST00000471037 SPON1Q9HCB6 807 aa12.96□□□□□ -0.33
SF3A1-206ENST00000471037 NFAT5O94916 1531 aa12.95□□□□□ -0.34
SF3A1-206ENST00000471037 KCNQ2O43526 872 aa12.95□□□□□ -0.34
SF3A1-206ENST00000471037 ROCK2O75116 1388 aaKnown RBP12.94□□□□□ -0.34
SF3A1-206ENST00000471037 NINLQ9Y2I6 1382 aa12.94□□□□□ -0.34
SF3A1-206ENST00000471037 CASZ1Q86V15 1759 aa12.94□□□□□ -0.34
SF3A1-206ENST00000471037 MARCH10Q8NA82 808 aaPredicted RBP12.94□□□□□ -0.34
SF3A1-206ENST00000471037 CARD10Q9BWT7 1032 aa12.94□□□□□ -0.34
SF3A1-206ENST00000471037 SBNO2Q9Y2G9 1366 aa12.94□□□□□ -0.34
SF3A1-206ENST00000471037 ANO8Q9HCE9 1232 aaPredicted RBP12.93□□□□□ -0.34
SF3A1-206ENST00000471037 MON2Q7Z3U7 1717 aa12.93□□□□□ -0.34
SF3A1-206ENST00000471037 CCDC7Q96M83 1385 aa12.93□□□□□ -0.34
SF3A1-206ENST00000471037 USP54Q70EL1 1684 aa12.93□□□□□ -0.34
SF3A1-206ENST00000471037 PTF1AQ7RTS3 328 aa12.92□□□□□ -0.34
SF3A1-206ENST00000471037 PPP1R1BQ9UD71 204 aaPredicted RBP12.92□□□□□ -0.34
SF3A1-206ENST00000471037 KTN1Q86UP2 1357 aaKnown RBP12.92□□□□□ -0.34
SF3A1-206ENST00000471037 TNS2Q63HR2 1409 aa12.91□□□□□ -0.34
SF3A1-206ENST00000471037 PROM2Q8N271 834 aa12.91□□□□□ -0.34
SF3A1-206ENST00000471037 SIN3AQ96ST3 1273 aa12.91□□□□□ -0.34
SF3A1-206ENST00000471037 RGPD5Q99666 1765 aa12.91□□□□□ -0.34
SF3A1-206ENST00000471037 USP31Q70CQ4 1352 aa12.91□□□□□ -0.34
SF3A1-206ENST00000471037 CSB-PGBD3P0DP91 1061 aa12.9□□□□□ -0.34
SF3A1-206ENST00000471037 SOX12O15370 315 aa12.89□□□□□ -0.35
SF3A1-206ENST00000471037 YY1P25490 414 aa12.89□□□□□ -0.35
SF3A1-206ENST00000471037 CD163L1Q9NR16 1453 aa12.89□□□□□ -0.35
SF3A1-206ENST00000471037 EXOC5O00471 708 aa12.88□□□□□ -0.35
SF3A1-206ENST00000471037 NHSQ6T4R5 1651 aa12.88□□□□□ -0.35
SF3A1-206ENST00000471037 ERBB3P21860 1342 aa12.88□□□□□ -0.35
SF3A1-206ENST00000471037 TXNRD1Q16881 649 aa12.87□□□□□ -0.35
SF3A1-206ENST00000471037 DCAF8L1A6NGE4 600 aa12.86□□□□□ -0.35
SF3A1-206ENST00000471037 PTGER2P43116 358 aa12.86□□□□□ -0.35
SF3A1-206ENST00000471037 PDGFDQ9GZP0 370 aaPredicted RBP12.86□□□□□ -0.35
SF3A1-206ENST00000471037 MYOM1P52179 1685 aa12.86□□□□□ -0.35
SF3A1-206ENST00000471037 NEUROD1Q13562 356 aa12.85□□□□□ -0.35
SF3A1-206ENST00000471037 SLC15A2Q16348 729 aa12.85□□□□□ -0.35
SF3A1-206ENST00000471037 STK32BQ9NY57 414 aa12.85□□□□□ -0.35
SF3A1-206ENST00000471037 EDC4Q6P2E9 1401 aaKnown RBP12.85□□□□□ -0.35
SF3A1-206ENST00000471037 PAPPAQ13219 1627 aa12.84□□□□□ -0.35
SF3A1-206ENST00000471037 LTN1O94822 1766 aa12.84□□□□□ -0.35
SF3A1-206ENST00000471037 ZBTB7AO95365 584 aa12.84□□□□□ -0.35
SF3A1-206ENST00000471037 ZEB1P37275 1124 aaPredicted RBP12.84□□□□□ -0.35
SF3A1-206ENST00000471037 NME9Q86XW9 330 aa12.84□□□□□ -0.35
SF3A1-206ENST00000471037 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.84□□□□□ -0.35
SF3A1-206ENST00000471037 IL2RBP14784 551 aa12.83□□□□□ -0.36
SF3A1-206ENST00000471037 CARD11Q9BXL7 1154 aa12.83□□□□□ -0.36
SF3A1-206ENST00000471037 HDGFL2Q7Z4V5 671 aaPredicted RBP12.82□□□□□ -0.36
SF3A1-206ENST00000471037 PUS7Q96PZ0 661 aaKnown RBP12.82□□□□□ -0.36
SF3A1-206ENST00000471037 SGIP1Q9BQI5 828 aa12.82□□□□□ -0.36
SF3A1-206ENST00000471037 MTFR1LQ9H019 292 aa12.82□□□□□ -0.36
SF3A1-206ENST00000471037 NLRP2Q9NX02 1062 aa12.82□□□□□ -0.36
SF3A1-206ENST00000471037 A0A1W2PP64 1363 aa12.81□□□□□ -0.36
SF3A1-206ENST00000471037 ANKRD24Q8TF21 1146 aa12.81□□□□□ -0.36
SF3A1-206ENST00000471037 BTAF1O14981 1849 aa12.81□□□□□ -0.36
SF3A1-206ENST00000471037 FAM208AQ9UK61 1670 aaKnown RBP12.8□□□□□ -0.36
SF3A1-206ENST00000471037 TMC1Q8TDI8 760 aa12.8□□□□□ -0.36
SF3A1-206ENST00000471037 ACSBG1Q96GR2 724 aa12.8□□□□□ -0.36
SF3A1-206ENST00000471037 SLC12A5Q9H2X9 1139 aa12.8□□□□□ -0.36
SF3A1-206ENST00000471037 TERF2IPQ9NYB0 399 aa12.8□□□□□ -0.36
SF3A1-206ENST00000471037 ATF5Q9Y2D1 282 aaPredicted RBP12.8□□□□□ -0.36
SF3A1-206ENST00000471037 SYT17Q9BSW7 474 aa12.79□□□□□ -0.36
SF3A1-206ENST00000471037 FHDC1Q9C0D6 1143 aaPredicted RBP12.79□□□□□ -0.36
SF3A1-206ENST00000471037 MAP3K5Q99683 1374 aa12.79□□□□□ -0.36
SF3A1-206ENST00000471037 IP6K1Q92551 441 aa12.78□□□□□ -0.36
SF3A1-206ENST00000471037 TIMELESSQ9UNS1 1208 aa12.78□□□□□ -0.36
SF3A1-206ENST00000471037 ZNF827Q17R98 1081 aa12.76□□□□□ -0.37
SF3A1-206ENST00000471037 LRRC4BQ9NT99 713 aa12.76□□□□□ -0.37
SF3A1-206ENST00000471037 TONSLQ96HA7 1378 aa12.76□□□□□ -0.37
SF3A1-206ENST00000471037 QSER1Q2KHR3 1735 aa12.76□□□□□ -0.37
SF3A1-206ENST00000471037 SLC27A3Q5K4L6 730 aa12.75□□□□□ -0.37
SF3A1-206ENST00000471037 ARXQ96QS3 562 aa12.75□□□□□ -0.37
SF3A1-206ENST00000471037 TESK2Q96S53 571 aa12.75□□□□□ -0.37
SF3A1-206ENST00000471037 AKT1S1Q96B36 256 aa12.74□□□□□ -0.37
SF3A1-206ENST00000471037 COL24A1Q17RW2 1714 aa12.74□□□□□ -0.37
SF3A1-206ENST00000471037 UTRNP46939 3433 aa12.74□□□□□ -0.37
SF3A1-206ENST00000471037 ANKRD36BQ8N2N9 1353 aa12.73□□□□□ -0.37
SF3A1-206ENST00000471037 MAP3K19Q56UN5 1328 aa12.73□□□□□ -0.37
SF3A1-206ENST00000471037 SLC24A1O60721 1099 aa12.73□□□□□ -0.37
SF3A1-206ENST00000471037 ZNF784Q8NCA9 323 aaPredicted RBP12.73□□□□□ -0.37
SF3A1-206ENST00000471037 SLC16A10Q8TF71 515 aa12.73□□□□□ -0.37
SF3A1-206ENST00000471037 COG3Q96JB2 828 aa12.73□□□□□ -0.37
SF3A1-206ENST00000471037 RTL1A6NKG5 1358 aa12.72□□□□□ -0.37
SF3A1-206ENST00000471037 DOT1LQ8TEK3 1739 aa12.72□□□□□ -0.37
SF3A1-206ENST00000471037 SHANK3Q9BYB0 1731 aa12.72□□□□□ -0.37
SF3A1-206ENST00000471037 HOXC9P31274 260 aa12.72□□□□□ -0.37
SF3A1-206ENST00000471037 DDX54Q8TDD1 881 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms