RNA–Protein interactions for RNA: ENST00000470837.1

CCM2-204, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-204ENST00000470837 NHSL1Q5SYE7 1610 aa12.89□□□□□ -0.35
CCM2-204ENST00000470837 NGEFQ8N5V2 710 aa12.89□□□□□ -0.35
CCM2-204ENST00000470837 ALS2Q96Q42 1657 aa12.89□□□□□ -0.35
CCM2-204ENST00000470837 NFAT5O94916 1531 aa12.88□□□□□ -0.35
CCM2-204ENST00000470837 CSB-PGBD3P0DP91 1061 aa12.88□□□□□ -0.35
CCM2-204ENST00000470837 COL3A1P02461 1466 aaPredicted RBP12.88□□□□□ -0.35
CCM2-204ENST00000470837 BLMP54132 1417 aaPredicted RBP12.88□□□□□ -0.35
CCM2-204ENST00000470837 ZBED9Q6R2W3 1325 aa12.88□□□□□ -0.35
CCM2-204ENST00000470837 MED1Q15648 1581 aaPredicted RBP12.87□□□□□ -0.35
CCM2-204ENST00000470837 CPDO75976 1380 aa12.87□□□□□ -0.35
CCM2-204ENST00000470837 KIAA0232Q92628 1395 aa12.87□□□□□ -0.35
CCM2-204ENST00000470837 HMOX1P09601 288 aa12.87□□□□□ -0.35
CCM2-204ENST00000470837 APAF1O14727 1248 aa12.86□□□□□ -0.35
CCM2-204ENST00000470837 PRKAR2BP31323 418 aa12.86□□□□□ -0.35
CCM2-204ENST00000470837 SULT6B1Q6IMI4 303 aa12.86□□□□□ -0.35
CCM2-204ENST00000470837 ANKRD24Q8TF21 1146 aa12.86□□□□□ -0.35
CCM2-204ENST00000470837 SALL2Q9Y467 1007 aaPredicted RBP12.86□□□□□ -0.35
CCM2-204ENST00000470837 MAP2P11137 1827 aaKnown RBP12.85□□□□□ -0.35
CCM2-204ENST00000470837 CHRNA2Q15822 529 aa12.85□□□□□ -0.35
CCM2-204ENST00000470837 EVA1CP58658 441 aa12.84□□□□□ -0.35
CCM2-204ENST00000470837 TCP11L2Q8N4U5 519 aa12.84□□□□□ -0.35
CCM2-204ENST00000470837 EYA1Q99502 592 aa12.84□□□□□ -0.35
CCM2-204ENST00000470837 RSPH6AQ9H0K4 717 aa12.84□□□□□ -0.35
CCM2-204ENST00000470837 PHLPP1O60346 1717 aa12.84□□□□□ -0.35
CCM2-204ENST00000470837 JCADQ9P266 1359 aa12.83□□□□□ -0.36
CCM2-204ENST00000470837 NUTM2BA6NNL0 878 aaPredicted RBP12.83□□□□□ -0.36
CCM2-204ENST00000470837 NUTM2EB1AL46 878 aaPredicted RBP12.83□□□□□ -0.36
CCM2-204ENST00000470837 NEUROD2Q15784 382 aa12.83□□□□□ -0.36
CCM2-204ENST00000470837 NUTM2AQ8IVF1 878 aaPredicted RBP12.83□□□□□ -0.36
CCM2-204ENST00000470837 NLRP2Q9NX02 1062 aa12.83□□□□□ -0.36
CCM2-204ENST00000470837 IGSF1Q8N6C5 1336 aa12.83□□□□□ -0.36
CCM2-204ENST00000470837 SENP3-EIF4A1A0A087X0R7 540 aa12.82□□□□□ -0.36
CCM2-204ENST00000470837 LMOD3Q0VAK6 560 aa12.82□□□□□ -0.36
CCM2-204ENST00000470837 PDE3BQ13370 1112 aa12.82□□□□□ -0.36
CCM2-204ENST00000470837 ERBB3P21860 1342 aa12.82□□□□□ -0.36
CCM2-204ENST00000470837 ABCC6O95255 1503 aa12.82□□□□□ -0.36
CCM2-204ENST00000470837 MARF1Q9Y4F3 1742 aaKnown RBP12.82□□□□□ -0.36
CCM2-204ENST00000470837 PHRF1Q9P1Y6 1649 aaKnown RBP12.81□□□□□ -0.36
CCM2-204ENST00000470837 SHPRHQ149N8 1683 aa12.81□□□□□ -0.36
CCM2-204ENST00000470837 ADAMTS2O95450 1211 aa12.81□□□□□ -0.36
CCM2-204ENST00000470837 PLEKHF1Q96S99 279 aa12.81□□□□□ -0.36
CCM2-204ENST00000470837 AXIN2Q9Y2T1 843 aa12.81□□□□□ -0.36
CCM2-204ENST00000470837 PEAK1Q9H792 1746 aa12.81□□□□□ -0.36
CCM2-204ENST00000470837 RIPK4P57078 832 aa12.8□□□□□ -0.36
CCM2-204ENST00000470837 NCBP3Q53F19 620 aaKnown RBP12.8□□□□□ -0.36
CCM2-204ENST00000470837 NBPF6Q5VWK0 638 aa12.8□□□□□ -0.36
CCM2-204ENST00000470837 TOM1L2Q6ZVM7 507 aa12.8□□□□□ -0.36
CCM2-204ENST00000470837 AEBP1Q8IUX7 1158 aa12.8□□□□□ -0.36
CCM2-204ENST00000470837 NBPF4Q96M43 638 aa12.8□□□□□ -0.36
CCM2-204ENST00000470837 STRN4Q9NRL3 753 aa12.8□□□□□ -0.36
CCM2-204ENST00000470837 RRP7AQ9Y3A4 280 aaKnown RBP12.8□□□□□ -0.36
CCM2-204ENST00000470837 SPATA31A6Q5VVP1 1343 aa12.8□□□□□ -0.36
CCM2-204ENST00000470837 COL16A1Q07092 1604 aaPredicted RBP12.8□□□□□ -0.36
CCM2-204ENST00000470837 FAM83GA6ND36 823 aa12.79□□□□□ -0.36
CCM2-204ENST00000470837 HSPA1LP34931 641 aa12.79□□□□□ -0.36
CCM2-204ENST00000470837 TMPOP42166 694 aaKnown RBP12.79□□□□□ -0.36
CCM2-204ENST00000470837 CALD1Q05682 793 aaKnown RBP12.79□□□□□ -0.36
CCM2-204ENST00000470837 NFE2L2Q16236 605 aa12.79□□□□□ -0.36
CCM2-204ENST00000470837 ILDR1Q86SU0 546 aaPredicted RBP12.79□□□□□ -0.36
CCM2-204ENST00000470837 USHBP1Q8N6Y0 703 aa12.79□□□□□ -0.36
CCM2-204ENST00000470837 GAS2L2Q8NHY3 880 aa12.79□□□□□ -0.36
CCM2-204ENST00000470837 RAPGEF4Q8WZA2 1011 aa12.79□□□□□ -0.36
CCM2-204ENST00000470837 LTN1O94822 1766 aa12.79□□□□□ -0.36
CCM2-204ENST00000470837 GOLGA2Q08379 1002 aa12.78□□□□□ -0.36
CCM2-204ENST00000470837 CCDC27Q2M243 656 aa12.78□□□□□ -0.36
CCM2-204ENST00000470837 MEX3CQ5U5Q3 659 aaKnown RBP12.78□□□□□ -0.36
CCM2-204ENST00000470837 BTG4Q9NY30 223 aa12.78□□□□□ -0.36
CCM2-204ENST00000470837 KDRP35968 1356 aa12.78□□□□□ -0.36
CCM2-204ENST00000470837 AMOTQ4VCS5 1084 aa12.77□□□□□ -0.37
CCM2-204ENST00000470837 PLEKHO1Q53GL0 409 aaPredicted RBP12.77□□□□□ -0.37
CCM2-204ENST00000470837 RTF1Q92541 710 aaKnown RBP12.77□□□□□ -0.37
CCM2-204ENST00000470837 WDR17Q8IZU2 1322 aa12.77□□□□□ -0.37
CCM2-204ENST00000470837 COL22A1Q8NFW1 1626 aaPredicted RBP12.77□□□□□ -0.37
CCM2-204ENST00000470837 TATP17735 454 aaPredicted RBP12.76□□□□□ -0.37
CCM2-204ENST00000470837 WDR63Q8IWG1 891 aa12.76□□□□□ -0.37
CCM2-204ENST00000470837 WWC1Q8IX03 1113 aa12.76□□□□□ -0.37
CCM2-204ENST00000470837 PHACTR3Q96KR7 559 aa12.76□□□□□ -0.37
CCM2-204ENST00000470837 NGLY1Q96IV0 654 aa12.75□□□□□ -0.37
CCM2-204ENST00000470837 CRYBG1Q9Y4K1 1723 aa12.74□□□□□ -0.37
CCM2-204ENST00000470837 E9PSI1 815 aa12.74□□□□□ -0.37
CCM2-204ENST00000470837 C1orf141Q5JVX7 400 aa12.74□□□□□ -0.37
CCM2-204ENST00000470837 C8orf37Q96NL8 207 aa12.74□□□□□ -0.37
CCM2-204ENST00000470837 CARD10Q9BWT7 1032 aa12.74□□□□□ -0.37
CCM2-204ENST00000470837 MYH16Q9H6N6 1097 aa12.74□□□□□ -0.37
CCM2-204ENST00000470837 SPG7Q9UQ90 795 aa12.74□□□□□ -0.37
CCM2-204ENST00000470837 COL5A2P05997 1499 aaPredicted RBP12.73□□□□□ -0.37
CCM2-204ENST00000470837 MTHFSDQ2M296 383 aaKnown RBP12.73□□□□□ -0.37
CCM2-204ENST00000470837 LARP1Q6PKG0 1096 aaKnown RBP12.73□□□□□ -0.37
CCM2-204ENST00000470837 CCDC9Q9Y3X0 531 aaKnown RBP12.73□□□□□ -0.37
CCM2-204ENST00000470837 ABCA3Q99758 1704 aa12.72□□□□□ -0.37
CCM2-204ENST00000470837 GNAT3A8MTJ3 354 aa12.72□□□□□ -0.37
CCM2-204ENST00000470837 HTATSF1O43719 755 aaKnown RBP12.72□□□□□ -0.37
CCM2-204ENST00000470837 ZNF530Q6P9A1 599 aaPredicted RBP12.72□□□□□ -0.37
CCM2-204ENST00000470837 USP35Q9P2H5 1018 aa12.72□□□□□ -0.37
CCM2-204ENST00000470837 CAMTA1Q9Y6Y1 1673 aa12.72□□□□□ -0.37
CCM2-204ENST00000470837 CRB1P82279 1406 aa12.71□□□□□ -0.37
CCM2-204ENST00000470837 COL14A1Q05707 1796 aaKnown RBP12.71□□□□□ -0.37
CCM2-204ENST00000470837 RGPD1P0DJD0 1748 aa12.71□□□□□ -0.37
CCM2-204ENST00000470837 ZNF521Q96K83 1311 aa12.71□□□□□ -0.37
CCM2-204ENST00000470837 IL2RBP14784 551 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms