RNA–Protein interactions for RNA: ENST00000470824.1

PRPF3-204, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 898 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-204ENST00000470824 LINC01559Q495D7 138 aa7.24□□□□□ -1.25
PRPF3-204ENST00000470824 DEPDC4Q8N2C3 294 aa7.24□□□□□ -1.25
PRPF3-204ENST00000470824 ZNF511Q8NB15 262 aa7.24□□□□□ -1.25
PRPF3-204ENST00000470824 PLPP7Q8NBV4 271 aa7.24□□□□□ -1.25
PRPF3-204ENST00000470824 BRD1O95696 1058 aa7.23□□□□□ -1.25
PRPF3-204ENST00000470824 ELOAQ14241 798 aaKnown RBP7.23□□□□□ -1.25
PRPF3-204ENST00000470824 MKRN1Q9UHC7 482 aaKnown RBP7.23□□□□□ -1.25
PRPF3-204ENST00000470824 ATP5J2-PTCD1G3V325 749 aa7.22□□□□□ -1.25
PRPF3-204ENST00000470824 ZBTB24O43167 697 aaPredicted RBP7.22□□□□□ -1.25
PRPF3-204ENST00000470824 GGCXP38435 758 aa7.22□□□□□ -1.25
PRPF3-204ENST00000470824 NCOA4Q13772 614 aa7.22□□□□□ -1.25
PRPF3-204ENST00000470824 ERFEQ4G0M1 354 aa7.22□□□□□ -1.25
PRPF3-204ENST00000470824 RNF20Q5VTR2 975 aa7.22□□□□□ -1.25
PRPF3-204ENST00000470824 LARP1Q6PKG0 1096 aaKnown RBP7.22□□□□□ -1.25
PRPF3-204ENST00000470824 FOXJ1Q92949 421 aa7.22□□□□□ -1.25
PRPF3-204ENST00000470824 CHIC2Q9UKJ5 165 aa7.22□□□□□ -1.25
PRPF3-204ENST00000470824 FAM196BA6NMK8 535 aa7.21□□□□□ -1.26
PRPF3-204ENST00000470824 RASA1P20936 1047 aa7.21□□□□□ -1.26
PRPF3-204ENST00000470824 EML3Q32P44 896 aa7.21□□□□□ -1.26
PRPF3-204ENST00000470824 SLC10A4Q96EP9 437 aa7.21□□□□□ -1.26
PRPF3-204ENST00000470824 CCDC9Q9Y3X0 531 aaKnown RBP7.21□□□□□ -1.26
PRPF3-204ENST00000470824 CARNS1A5YM72 827 aa7.2□□□□□ -1.26
PRPF3-204ENST00000470824 TMEM88BA6NKF7 163 aa7.2□□□□□ -1.26
PRPF3-204ENST00000470824 PPEF1O14829 653 aaPredicted RBP7.2□□□□□ -1.26
PRPF3-204ENST00000470824 GIGYF1O75420 1035 aaPredicted RBP7.2□□□□□ -1.26
PRPF3-204ENST00000470824 SH3BP2P78314 561 aa7.2□□□□□ -1.26
PRPF3-204ENST00000470824 KCNA1Q09470 495 aa7.2□□□□□ -1.26
PRPF3-204ENST00000470824 C4orf48Q5BLP8 95 aa7.2□□□□□ -1.26
PRPF3-204ENST00000470824 TRIM50Q86XT4 487 aa7.2□□□□□ -1.26
PRPF3-204ENST00000470824 NOVA2Q9UNW9 492 aaKnown RBP7.2□□□□□ -1.26
PRPF3-204ENST00000470824 RNF223E7ERA6 249 aa7.19□□□□□ -1.26
PRPF3-204ENST00000470824 NBPF20Q3BBV1 942 aa7.19□□□□□ -1.26
PRPF3-204ENST00000470824 TRAF7Q6Q0C0 670 aa7.19□□□□□ -1.26
PRPF3-204ENST00000470824 CCDC125Q86Z20 511 aa7.19□□□□□ -1.26
PRPF3-204ENST00000470824 ANKLE1Q8NAG6 615 aa7.19□□□□□ -1.26
PRPF3-204ENST00000470824 C1QTNF2Q9BXJ5 285 aa7.19□□□□□ -1.26
PRPF3-204ENST00000470824 CDV3Q9UKY7 258 aaKnown RBP7.19□□□□□ -1.26
PRPF3-204ENST00000470824 DOLKQ9UPQ8 538 aa7.19□□□□□ -1.26
PRPF3-204ENST00000470824 NOD1Q9Y239 953 aa7.19□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L15C9J2P7 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L10C9JJH3 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L13C9JLJ4 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L12C9JPN9 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L11C9JVI0 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L21D6R901 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L18D6R9N7 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L22D6RA61 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L17D6RBQ6 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L19D6RCP7 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L20D6RJB6 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 ATP1A2P50993 1020 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 USP17L24Q0WX57 530 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 TSGA10IPQ3SY00 556 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 CRTC2Q53ET0 693 aaPredicted RBP7.18□□□□□ -1.26
PRPF3-204ENST00000470824 B4GALNT3Q6L9W6 998 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 TRMT44Q8IYL2 757 aaKnown RBP7.18□□□□□ -1.26
PRPF3-204ENST00000470824 CCDC85AQ96PX6 553 aaPredicted RBP7.18□□□□□ -1.26
PRPF3-204ENST00000470824 CDCA7Q9BWT1 371 aaPredicted RBP7.18□□□□□ -1.26
PRPF3-204ENST00000470824 GZF1Q9H116 711 aaPredicted RBP7.18□□□□□ -1.26
PRPF3-204ENST00000470824 ZMIZ1Q9ULJ6 1067 aa7.18□□□□□ -1.26
PRPF3-204ENST00000470824 TRIM32Q13049 653 aa7.17□□□□□ -1.26
PRPF3-204ENST00000470824 PTK7Q13308 1070 aa7.17□□□□□ -1.26
PRPF3-204ENST00000470824 TMEM164Q5U3C3 297 aa7.17□□□□□ -1.26
PRPF3-204ENST00000470824 SEPT12Q8IYM1 358 aa7.17□□□□□ -1.26
PRPF3-204ENST00000470824 OGFOD1Q8N543 542 aa7.17□□□□□ -1.26
PRPF3-204ENST00000470824 FAM200AQ8TCP9 573 aa7.17□□□□□ -1.26
PRPF3-204ENST00000470824 STK32AQ8WU08 396 aa7.17□□□□□ -1.26
PRPF3-204ENST00000470824 ESPNB1AK53 854 aa7.16□□□□□ -1.26
PRPF3-204ENST00000470824 VARSP26640 1264 aaKnown RBP7.16□□□□□ -1.26
PRPF3-204ENST00000470824 WNT7BP56706 349 aa7.16□□□□□ -1.26
PRPF3-204ENST00000470824 OXLD1Q5BKU9 147 aa7.16□□□□□ -1.26
PRPF3-204ENST00000470824 ANKMY2Q8IV38 441 aa7.16□□□□□ -1.26
PRPF3-204ENST00000470824 SIRT1Q96EB6 747 aa7.16□□□□□ -1.26
PRPF3-204ENST00000470824 DNAAF2Q9NVR5 837 aaKnown RBP7.16□□□□□ -1.26
PRPF3-204ENST00000470824 RPIAP49247 311 aa7.15□□□□□ -1.26
PRPF3-204ENST00000470824 USP4Q13107 963 aa7.15□□□□□ -1.26
PRPF3-204ENST00000470824 LARGE2Q8N3Y3 721 aa7.15□□□□□ -1.26
PRPF3-204ENST00000470824 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.15□□□□□ -1.26
PRPF3-204ENST00000470824 CD2BP2O95400 341 aaKnown RBP7.14□□□□□ -1.27
PRPF3-204ENST00000470824 DPYDQ12882 1025 aa7.14□□□□□ -1.27
PRPF3-204ENST00000470824 TMCO4Q5TGY1 634 aa7.14□□□□□ -1.27
PRPF3-204ENST00000470824 PPP1R18Q6NYC8 613 aa7.14□□□□□ -1.27
PRPF3-204ENST00000470824 RBM19Q9Y4C8 960 aaKnown RBP7.14□□□□□ -1.27
PRPF3-204ENST00000470824 PCDHB11Q9Y5F2 797 aa7.14□□□□□ -1.27
PRPF3-204ENST00000470824 GFRA3O60609 400 aa7.13□□□□□ -1.27
PRPF3-204ENST00000470824 GTF2IP78347 998 aa7.13□□□□□ -1.27
PRPF3-204ENST00000470824 CLDN10P78369 228 aa7.13□□□□□ -1.27
PRPF3-204ENST00000470824 PLA2G2CQ5R387 149 aa7.13□□□□□ -1.27
PRPF3-204ENST00000470824 ZNF594Q96JF6 807 aaPredicted RBP7.13□□□□□ -1.27
PRPF3-204ENST00000470824 KCTD15Q96SI1 283 aaPredicted RBP7.13□□□□□ -1.27
PRPF3-204ENST00000470824 MAP4K5Q9Y4K4 846 aa7.13□□□□□ -1.27
PRPF3-204ENST00000470824 ZBTB7BO15156 539 aaPredicted RBP7.12□□□□□ -1.27
PRPF3-204ENST00000470824 SKOR1P84550 965 aa7.12□□□□□ -1.27
PRPF3-204ENST00000470824 PSME1Q06323 249 aa7.12□□□□□ -1.27
PRPF3-204ENST00000470824 LAPTM4AQ15012 233 aa7.12□□□□□ -1.27
PRPF3-204ENST00000470824 VASH1Q7L8A9 365 aaPredicted RBP7.12□□□□□ -1.27
PRPF3-204ENST00000470824 CLP1Q92989 425 aaKnown RBP7.12□□□□□ -1.27
PRPF3-204ENST00000470824 RAB15P59190 212 aa7.11□□□□□ -1.27
PRPF3-204ENST00000470824 FAM69CQ0P6D2 419 aa7.11□□□□□ -1.27
PRPF3-204ENST00000470824 SWI5Q1ZZU3 235 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms