RNA–Protein interactions for RNA: ENST00000469923.5

SHROOM3-203, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 764 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-203ENST00000469923 USP31Q70CQ4 1352 aa12.99□□□□□ -0.33
SHROOM3-203ENST00000469923 APBA3O96018 575 aa12.99□□□□□ -0.33
SHROOM3-203ENST00000469923 PDE3BQ13370 1112 aa12.99□□□□□ -0.33
SHROOM3-203ENST00000469923 NFAT5O94916 1531 aa12.98□□□□□ -0.33
SHROOM3-203ENST00000469923 BRD4O60885 1362 aaPredicted RBP12.98□□□□□ -0.33
SHROOM3-203ENST00000469923 FYB1O15117 783 aa12.98□□□□□ -0.33
SHROOM3-203ENST00000469923 CSB-PGBD3P0DP91 1061 aa12.98□□□□□ -0.33
SHROOM3-203ENST00000469923 HDGFL2Q7Z4V5 671 aaPredicted RBP12.98□□□□□ -0.33
SHROOM3-203ENST00000469923 CCER1Q8TC90 406 aaPredicted RBP12.98□□□□□ -0.33
SHROOM3-203ENST00000469923 RGPD5Q99666 1765 aa12.98□□□□□ -0.33
SHROOM3-203ENST00000469923 AKAP12Q02952 1782 aa12.97□□□□□ -0.33
SHROOM3-203ENST00000469923 WDR17Q8IZU2 1322 aa12.97□□□□□ -0.33
SHROOM3-203ENST00000469923 KCNQ2O43526 872 aa12.97□□□□□ -0.33
SHROOM3-203ENST00000469923 SF3B2Q13435 895 aaKnown RBP12.97□□□□□ -0.33
SHROOM3-203ENST00000469923 R3HDM1Q15032 1099 aaKnown RBP12.97□□□□□ -0.33
SHROOM3-203ENST00000469923 RRS1Q15050 365 aaKnown RBP12.97□□□□□ -0.33
SHROOM3-203ENST00000469923 FAM196AQ6ZSG2 479 aa12.97□□□□□ -0.33
SHROOM3-203ENST00000469923 PROM2Q8N271 834 aa12.97□□□□□ -0.33
SHROOM3-203ENST00000469923 KCNH5Q8NCM2 988 aa12.97□□□□□ -0.33
SHROOM3-203ENST00000469923 POLR3GLQ9BT43 218 aa12.97□□□□□ -0.33
SHROOM3-203ENST00000469923 ANKRD24Q8TF21 1146 aa12.96□□□□□ -0.33
SHROOM3-203ENST00000469923 CARD10Q9BWT7 1032 aa12.96□□□□□ -0.33
SHROOM3-203ENST00000469923 NLRP2Q9NX02 1062 aa12.96□□□□□ -0.33
SHROOM3-203ENST00000469923 TERF2IPQ9NYB0 399 aa12.96□□□□□ -0.33
SHROOM3-203ENST00000469923 CRB1P82279 1406 aa12.96□□□□□ -0.34
SHROOM3-203ENST00000469923 HSPA5P11021 654 aaKnown RBP12.95□□□□□ -0.34
SHROOM3-203ENST00000469923 PUS7Q96PZ0 661 aaKnown RBP12.95□□□□□ -0.34
SHROOM3-203ENST00000469923 PDGFDQ9GZP0 370 aaPredicted RBP12.95□□□□□ -0.34
SHROOM3-203ENST00000469923 MAP3K19Q56UN5 1328 aa12.94□□□□□ -0.34
SHROOM3-203ENST00000469923 BAG6P46379 1132 aa12.94□□□□□ -0.34
SHROOM3-203ENST00000469923 TMF1P82094 1093 aa12.94□□□□□ -0.34
SHROOM3-203ENST00000469923 DDB1Q16531 1140 aa12.94□□□□□ -0.34
SHROOM3-203ENST00000469923 USHBP1Q8N6Y0 703 aa12.94□□□□□ -0.34
SHROOM3-203ENST00000469923 ACSBG1Q96GR2 724 aa12.94□□□□□ -0.34
SHROOM3-203ENST00000469923 THRAP3Q9Y2W1 955 aaKnown RBP12.94□□□□□ -0.34
SHROOM3-203ENST00000469923 IP6K1Q92551 441 aa12.93□□□□□ -0.34
SHROOM3-203ENST00000469923 EDC4Q6P2E9 1401 aaKnown RBP12.93□□□□□ -0.34
SHROOM3-203ENST00000469923 OVOS2A0A0J9YW53 1432 aa12.92□□□□□ -0.34
SHROOM3-203ENST00000469923 OVOS2Q6IE36 1432 aa12.92□□□□□ -0.34
SHROOM3-203ENST00000469923 MON2Q7Z3U7 1717 aa12.92□□□□□ -0.34
SHROOM3-203ENST00000469923 DISP2A7MBM2 1401 aa12.91□□□□□ -0.34
SHROOM3-203ENST00000469923 HOXC9P31274 260 aa12.91□□□□□ -0.34
SHROOM3-203ENST00000469923 HSP90AB2PQ58FF8 381 aa12.91□□□□□ -0.34
SHROOM3-203ENST00000469923 ERBB3P21860 1342 aa12.9□□□□□ -0.34
SHROOM3-203ENST00000469923 EXOC5O00471 708 aa12.9□□□□□ -0.34
SHROOM3-203ENST00000469923 NBPF6Q5VWK0 638 aa12.9□□□□□ -0.34
SHROOM3-203ENST00000469923 COG3Q96JB2 828 aa12.9□□□□□ -0.34
SHROOM3-203ENST00000469923 NBPF4Q96M43 638 aa12.9□□□□□ -0.34
SHROOM3-203ENST00000469923 KCNQ4P56696 695 aa12.89□□□□□ -0.35
SHROOM3-203ENST00000469923 DDX54Q8TDD1 881 aaKnown RBP12.89□□□□□ -0.35
SHROOM3-203ENST00000469923 ANO8Q9HCE9 1232 aaPredicted RBP12.89□□□□□ -0.35
SHROOM3-203ENST00000469923 EMILIN1Q9Y6C2 1016 aa12.89□□□□□ -0.35
SHROOM3-203ENST00000469923 TNNT2P45379 298 aaPredicted RBP12.88□□□□□ -0.35
SHROOM3-203ENST00000469923 AMPHP49418 695 aa12.88□□□□□ -0.35
SHROOM3-203ENST00000469923 ANKRD36BQ8N2N9 1353 aa12.88□□□□□ -0.35
SHROOM3-203ENST00000469923 TIMELESSQ9UNS1 1208 aa12.87□□□□□ -0.35
SHROOM3-203ENST00000469923 TNS1Q9HBL0 1735 aaKnown RBP12.87□□□□□ -0.35
SHROOM3-203ENST00000469923 PEAK1Q9H792 1746 aa12.86□□□□□ -0.35
SHROOM3-203ENST00000469923 BCL11BQ9C0K0 894 aaPredicted RBP12.86□□□□□ -0.35
SHROOM3-203ENST00000469923 PANK3Q9H999 370 aa12.86□□□□□ -0.35
SHROOM3-203ENST00000469923 IL2RBP14784 551 aa12.85□□□□□ -0.35
SHROOM3-203ENST00000469923 NSD3Q9BZ95 1437 aa12.85□□□□□ -0.35
SHROOM3-203ENST00000469923 PPM1GO15355 546 aaPredicted RBP12.84□□□□□ -0.35
SHROOM3-203ENST00000469923 CLSPNQ9HAW4 1339 aa12.84□□□□□ -0.35
SHROOM3-203ENST00000469923 LRRC37A3O60309 1634 aa12.84□□□□□ -0.35
SHROOM3-203ENST00000469923 PARP4Q9UKK3 1724 aaKnown RBP12.83□□□□□ -0.36
SHROOM3-203ENST00000469923 EIF4G2P78344 907 aaKnown RBP eCLIP12.83□□□□□ -0.36
SHROOM3-203ENST00000469923 LRRC4BQ9NT99 713 aa12.83□□□□□ -0.36
SHROOM3-203ENST00000469923 LTN1O94822 1766 aa12.82□□□□□ -0.36
SHROOM3-203ENST00000469923 RGPD2P0DJD1 1756 aa12.82□□□□□ -0.36
SHROOM3-203ENST00000469923 OVOS2A0A0G2JMS6 1433 aa12.82□□□□□ -0.36
SHROOM3-203ENST00000469923 PLSCR1O15162 318 aa12.82□□□□□ -0.36
SHROOM3-203ENST00000469923 PRIM1P49642 420 aaKnown RBP12.82□□□□□ -0.36
SHROOM3-203ENST00000469923 TXNRD1Q16881 649 aa12.82□□□□□ -0.36
SHROOM3-203ENST00000469923 POLKQ9UBT6 870 aa12.82□□□□□ -0.36
SHROOM3-203ENST00000469923 CCDC7Q96M83 1385 aa12.81□□□□□ -0.36
SHROOM3-203ENST00000469923 KAT6BQ8WYB5 2073 aa12.81□□□□□ -0.36
SHROOM3-203ENST00000469923 CDCA7Q9BWT1 371 aaPredicted RBP12.81□□□□□ -0.36
SHROOM3-203ENST00000469923 RGPD1P0DJD0 1748 aa12.81□□□□□ -0.36
SHROOM3-203ENST00000469923 MEGF6O75095 1541 aa12.8□□□□□ -0.36
SHROOM3-203ENST00000469923 CNGB1Q14028 1251 aaPredicted RBP12.8□□□□□ -0.36
SHROOM3-203ENST00000469923 SMIM5Q71RC9 77 aa12.8□□□□□ -0.36
SHROOM3-203ENST00000469923 SBF2Q86WG5 1849 aa12.8□□□□□ -0.36
SHROOM3-203ENST00000469923 NINLQ9Y2I6 1382 aa12.8□□□□□ -0.36
SHROOM3-203ENST00000469923 USP54Q70EL1 1684 aa12.8□□□□□ -0.36
SHROOM3-203ENST00000469923 ZBTB7AO95365 584 aa12.79□□□□□ -0.36
SHROOM3-203ENST00000469923 ZCRB1Q8TBF4 217 aaKnown RBP12.79□□□□□ -0.36
SHROOM3-203ENST00000469923 ATF5Q9Y2D1 282 aaPredicted RBP12.79□□□□□ -0.36
SHROOM3-203ENST00000469923 MYOM1P52179 1685 aa12.78□□□□□ -0.36
SHROOM3-203ENST00000469923 CYP27B1O15528 508 aa12.78□□□□□ -0.36
SHROOM3-203ENST00000469923 ZNF827Q17R98 1081 aa12.78□□□□□ -0.36
SHROOM3-203ENST00000469923 CDCA8Q53HL2 280 aa12.78□□□□□ -0.36
SHROOM3-203ENST00000469923 EYA1Q99502 592 aa12.78□□□□□ -0.36
SHROOM3-203ENST00000469923 SLC24A1O60721 1099 aa12.77□□□□□ -0.37
SHROOM3-203ENST00000469923 SYTL4Q96C24 671 aaPredicted RBP12.77□□□□□ -0.37
SHROOM3-203ENST00000469923 TNS2Q63HR2 1409 aa12.77□□□□□ -0.37
SHROOM3-203ENST00000469923 EIF4A2Q14240 407 aaKnown RBP12.76□□□□□ -0.37
SHROOM3-203ENST00000469923 NBPF14Q5TI25 921 aa12.76□□□□□ -0.37
SHROOM3-203ENST00000469923 KIF7Q2M1P5 1343 aa12.76□□□□□ -0.37
SHROOM3-203ENST00000469923 NUP188Q5SRE5 1749 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms