RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 TRIM26Q12899 539 aaPredicted RBP18.79■□□□□ 0.6
CPSF4-210ENST00000469897 MARCH10Q8NA82 808 aaPredicted RBP18.79■□□□□ 0.6
CPSF4-210ENST00000469897 SBNO2Q9Y2G9 1366 aa18.79■□□□□ 0.6
CPSF4-210ENST00000469897 NBPF14Q5TI25 921 aa18.78■□□□□ 0.6
CPSF4-210ENST00000469897 PTF1AQ7RTS3 328 aa18.78■□□□□ 0.6
CPSF4-210ENST00000469897 ST20-MTHFSA0A0A6YYL1 179 aa18.77■□□□□ 0.6
CPSF4-210ENST00000469897 EXOC5O00471 708 aa18.77■□□□□ 0.6
CPSF4-210ENST00000469897 CDCA7Q9BWT1 371 aaPredicted RBP18.77■□□□□ 0.6
CPSF4-210ENST00000469897 TERF2IPQ9NYB0 399 aa18.76■□□□□ 0.59
CPSF4-210ENST00000469897 PARD3Q8TEW0 1356 aa18.76■□□□□ 0.59
CPSF4-210ENST00000469897 RGPD1P0DJD0 1748 aa18.75■□□□□ 0.59
CPSF4-210ENST00000469897 PUS7Q96PZ0 661 aaKnown RBP18.75■□□□□ 0.59
CPSF4-210ENST00000469897 USP31Q70CQ4 1352 aa18.75■□□□□ 0.59
CPSF4-210ENST00000469897 PIK3C2AO00443 1686 aa18.75■□□□□ 0.59
CPSF4-210ENST00000469897 CD163L1Q9NR16 1453 aa18.74■□□□□ 0.59
CPSF4-210ENST00000469897 PLSCR1O15162 318 aa18.74■□□□□ 0.59
CPSF4-210ENST00000469897 TESK2Q96S53 571 aa18.74■□□□□ 0.59
CPSF4-210ENST00000469897 BCL11BQ9C0K0 894 aaPredicted RBP18.74■□□□□ 0.59
CPSF4-210ENST00000469897 NLRP2Q9NX02 1062 aa18.73■□□□□ 0.59
CPSF4-210ENST00000469897 OVOS2A0A0G2JMS6 1433 aa18.73■□□□□ 0.59
CPSF4-210ENST00000469897 OVOS2A0A0J9YW53 1432 aa18.73■□□□□ 0.59
CPSF4-210ENST00000469897 OVOS2Q6IE36 1432 aa18.73■□□□□ 0.59
CPSF4-210ENST00000469897 PROM2Q8N271 834 aa18.7■□□□□ 0.58
CPSF4-210ENST00000469897 ANKRD24Q8TF21 1146 aa18.7■□□□□ 0.58
CPSF4-210ENST00000469897 TNS1Q9HBL0 1735 aaKnown RBP18.7■□□□□ 0.58
CPSF4-210ENST00000469897 COL18A1P39060 1754 aa18.7■□□□□ 0.58
CPSF4-210ENST00000469897 A0A1W2PP64 1363 aa18.69■□□□□ 0.58
CPSF4-210ENST00000469897 CCDC7Q96M83 1385 aa18.69■□□□□ 0.58
CPSF4-210ENST00000469897 SLC24A1O60721 1099 aa18.69■□□□□ 0.58
CPSF4-210ENST00000469897 NFAT5O94916 1531 aa18.68■□□□□ 0.58
CPSF4-210ENST00000469897 ERBB3P21860 1342 aa18.68■□□□□ 0.58
CPSF4-210ENST00000469897 EDC4Q6P2E9 1401 aaKnown RBP18.67■□□□□ 0.58
CPSF4-210ENST00000469897 KCNQ2O43526 872 aa18.67■□□□□ 0.58
CPSF4-210ENST00000469897 FBLN1P23142 703 aa18.67■□□□□ 0.58
CPSF4-210ENST00000469897 IL2RBP14784 551 aa18.66■□□□□ 0.58
CPSF4-210ENST00000469897 IP6K1Q92551 441 aa18.66■□□□□ 0.58
CPSF4-210ENST00000469897 LTV1Q96GA3 475 aaPredicted RBP18.66■□□□□ 0.58
CPSF4-210ENST00000469897 ACSBG1Q96GR2 724 aa18.66■□□□□ 0.58
CPSF4-210ENST00000469897 COG3Q96JB2 828 aa18.65■□□□□ 0.58
CPSF4-210ENST00000469897 PARP4Q9UKK3 1724 aaKnown RBP18.65■□□□□ 0.58
CPSF4-210ENST00000469897 LRP5O75197 1615 aa18.64■□□□□ 0.57
CPSF4-210ENST00000469897 AKAP12Q02952 1782 aa18.64■□□□□ 0.57
CPSF4-210ENST00000469897 SPON1Q9HCB6 807 aa18.64■□□□□ 0.57
CPSF4-210ENST00000469897 BCL9O00512 1426 aa18.64■□□□□ 0.57
CPSF4-210ENST00000469897 TMF1P82094 1093 aa18.63■□□□□ 0.57
CPSF4-210ENST00000469897 TXNRD1Q16881 649 aa18.63■□□□□ 0.57
CPSF4-210ENST00000469897 ANO8Q9HCE9 1232 aaPredicted RBP18.63■□□□□ 0.57
CPSF4-210ENST00000469897 PEAK1Q9H792 1746 aa18.61■□□□□ 0.57
CPSF4-210ENST00000469897 LRRC37A3O60309 1634 aa18.61■□□□□ 0.57
CPSF4-210ENST00000469897 PDGFDQ9GZP0 370 aaPredicted RBP18.61■□□□□ 0.57
CPSF4-210ENST00000469897 NINLQ9Y2I6 1382 aa18.6■□□□□ 0.57
CPSF4-210ENST00000469897 MAP3K19Q56UN5 1328 aa18.6■□□□□ 0.57
CPSF4-210ENST00000469897 AMPHP49418 695 aa18.6■□□□□ 0.57
CPSF4-210ENST00000469897 DDX54Q8TDD1 881 aaKnown RBP18.6■□□□□ 0.57
CPSF4-210ENST00000469897 GGNBP2Q9H3C7 697 aa18.6■□□□□ 0.57
CPSF4-210ENST00000469897 PPP1R1BQ9UD71 204 aaPredicted RBP18.6■□□□□ 0.57
CPSF4-210ENST00000469897 FYB1O15117 783 aa18.59■□□□□ 0.57
CPSF4-210ENST00000469897 MON2Q7Z3U7 1717 aa18.58■□□□□ 0.57
CPSF4-210ENST00000469897 HOXC9P31274 260 aa18.58■□□□□ 0.56
CPSF4-210ENST00000469897 PCGF6Q9BYE7 350 aa18.58■□□□□ 0.56
CPSF4-210ENST00000469897 STK32BQ9NY57 414 aa18.58■□□□□ 0.56
CPSF4-210ENST00000469897 USP47Q96K76 1375 aa18.57■□□□□ 0.56
CPSF4-210ENST00000469897 SLC15A2Q16348 729 aa18.57■□□□□ 0.56
CPSF4-210ENST00000469897 ABCC6O95255 1503 aa18.57■□□□□ 0.56
CPSF4-210ENST00000469897 TNS2Q63HR2 1409 aa18.57■□□□□ 0.56
CPSF4-210ENST00000469897 ZBTB7AO95365 584 aa18.56■□□□□ 0.56
CPSF4-210ENST00000469897 RRS1Q15050 365 aaKnown RBP18.56■□□□□ 0.56
CPSF4-210ENST00000469897 ANKRD36BQ8N2N9 1353 aa18.55■□□□□ 0.56
CPSF4-210ENST00000469897 ATF5Q9Y2D1 282 aaPredicted RBP18.55■□□□□ 0.56
CPSF4-210ENST00000469897 RGPD5Q99666 1765 aa18.55■□□□□ 0.56
CPSF4-210ENST00000469897 RREB1Q92766 1687 aa18.54■□□□□ 0.56
CPSF4-210ENST00000469897 CDCA8Q53HL2 280 aa18.54■□□□□ 0.56
CPSF4-210ENST00000469897 NUP188Q5SRE5 1749 aa18.54■□□□□ 0.56
CPSF4-210ENST00000469897 TIMELESSQ9UNS1 1208 aa18.53■□□□□ 0.56
CPSF4-210ENST00000469897 NBPF6Q5VWK0 638 aa18.52■□□□□ 0.56
CPSF4-210ENST00000469897 NBPF4Q96M43 638 aa18.52■□□□□ 0.56
CPSF4-210ENST00000469897 CARD14Q9BXL6 1004 aa18.52■□□□□ 0.56
CPSF4-210ENST00000469897 PRIM1P49642 420 aaKnown RBP18.51■□□□□ 0.55
CPSF4-210ENST00000469897 ZCRB1Q8TBF4 217 aaKnown RBP18.51■□□□□ 0.55
CPSF4-210ENST00000469897 USHBP1Q8N6Y0 703 aa18.5■□□□□ 0.55
CPSF4-210ENST00000469897 SYTL4Q96C24 671 aaPredicted RBP18.5■□□□□ 0.55
CPSF4-210ENST00000469897 LRRC4BQ9NT99 713 aa18.5■□□□□ 0.55
CPSF4-210ENST00000469897 PTGER2P43116 358 aa18.49■□□□□ 0.55
CPSF4-210ENST00000469897 HSP90AB2PQ58FF8 381 aa18.49■□□□□ 0.55
CPSF4-210ENST00000469897 USP54Q70EL1 1684 aa18.49■□□□□ 0.55
CPSF4-210ENST00000469897 SBF2Q86WG5 1849 aa18.46■□□□□ 0.55
CPSF4-210ENST00000469897 DCAF8L1A6NGE4 600 aa18.46■□□□□ 0.55
CPSF4-210ENST00000469897 KCNQ4P56696 695 aa18.46■□□□□ 0.55
CPSF4-210ENST00000469897 MTFR1LQ9H019 292 aa18.46■□□□□ 0.55
CPSF4-210ENST00000469897 WNK3Q9BYP7 1800 aa18.45■□□□□ 0.54
CPSF4-210ENST00000469897 ZNF827Q17R98 1081 aa18.45■□□□□ 0.54
CPSF4-210ENST00000469897 RAPGEF4Q8WZA2 1011 aa18.45■□□□□ 0.54
CPSF4-210ENST00000469897 POLR3GLQ9BT43 218 aa18.45■□□□□ 0.54
CPSF4-210ENST00000469897 TATP17735 454 aaPredicted RBP18.44■□□□□ 0.54
CPSF4-210ENST00000469897 LTN1O94822 1766 aa18.43■□□□□ 0.54
CPSF4-210ENST00000469897 PPM1GO15355 546 aaPredicted RBP18.43■□□□□ 0.54
CPSF4-210ENST00000469897 SLC27A3Q5K4L6 730 aa18.43■□□□□ 0.54
CPSF4-210ENST00000469897 AKT1S1Q96B36 256 aa18.43■□□□□ 0.54
CPSF4-210ENST00000469897 EMILIN1Q9Y6C2 1016 aa18.43■□□□□ 0.54
CPSF4-210ENST00000469897 RTL1A6NKG5 1358 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 237.9 ms