RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 APBA3O96018 575 aa34.79■■■■□ 3.16
PTCH1-210ENST00000468211 PEAK1Q9H792 1746 aa34.78■■■■□ 3.16
PTCH1-210ENST00000468211 KCNH5Q8NCM2 988 aa34.78■■■■□ 3.16
PTCH1-210ENST00000468211 TOM1L2Q6ZVM7 507 aa34.77■■■■□ 3.16
PTCH1-210ENST00000468211 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.77■■■■□ 3.16
PTCH1-210ENST00000468211 WDR17Q8IZU2 1322 aa34.77■■■■□ 3.16
PTCH1-210ENST00000468211 USP54Q70EL1 1684 aa34.76■■■■□ 3.15
PTCH1-210ENST00000468211 RREB1Q92766 1687 aa34.76■■■■□ 3.15
PTCH1-210ENST00000468211 SBF2Q86WG5 1849 aa34.74■■■■□ 3.15
PTCH1-210ENST00000468211 R3HDM1Q15032 1099 aaKnown RBP34.74■■■■□ 3.15
PTCH1-210ENST00000468211 TMC1Q8TDI8 760 aa34.74■■■■□ 3.15
PTCH1-210ENST00000468211 SLC12A5Q9H2X9 1139 aa34.74■■■■□ 3.15
PTCH1-210ENST00000468211 TRIM26Q12899 539 aaPredicted RBP34.73■■■■□ 3.15
PTCH1-210ENST00000468211 NME9Q86XW9 330 aa34.72■■■■□ 3.15
PTCH1-210ENST00000468211 NUP188Q5SRE5 1749 aa34.71■■■■□ 3.15
PTCH1-210ENST00000468211 USP31Q70CQ4 1352 aa34.71■■■■□ 3.15
PTCH1-210ENST00000468211 LTN1O94822 1766 aa34.69■■■■□ 3.14
PTCH1-210ENST00000468211 DDB1Q16531 1140 aa34.68■■■■□ 3.14
PTCH1-210ENST00000468211 PARD3Q8TEW0 1356 aa34.68■■■■□ 3.14
PTCH1-210ENST00000468211 OVOS2A0A0G2JMS6 1433 aa34.67■■■■□ 3.14
PTCH1-210ENST00000468211 OVOS2A0A0J9YW53 1432 aa34.67■■■■□ 3.14
PTCH1-210ENST00000468211 OVOS2Q6IE36 1432 aa34.67■■■■□ 3.14
PTCH1-210ENST00000468211 TESK2Q96S53 571 aa34.67■■■■□ 3.14
PTCH1-210ENST00000468211 A0A1W2PP64 1363 aa34.65■■■■□ 3.14
PTCH1-210ENST00000468211 CSB-PGBD3P0DP91 1061 aa34.65■■■■□ 3.14
PTCH1-210ENST00000468211 HDGFL2Q7Z4V5 671 aaPredicted RBP34.65■■■■□ 3.14
PTCH1-210ENST00000468211 CARD10Q9BWT7 1032 aa34.65■■■■□ 3.14
PTCH1-210ENST00000468211 ABCC6O95255 1503 aa34.65■■■■□ 3.14
PTCH1-210ENST00000468211 ST20-MTHFSA0A0A6YYL1 179 aa34.64■■■■□ 3.14
PTCH1-210ENST00000468211 EDC4Q6P2E9 1401 aaKnown RBP34.64■■■■□ 3.14
PTCH1-210ENST00000468211 PUS7Q96PZ0 661 aaKnown RBP34.62■■■■□ 3.13
PTCH1-210ENST00000468211 PTF1AQ7RTS3 328 aa34.61■■■■□ 3.13
PTCH1-210ENST00000468211 MARCH10Q8NA82 808 aaPredicted RBP34.61■■■■□ 3.13
PTCH1-210ENST00000468211 C11orf95C9JLR9 678 aaPredicted RBP34.59■■■■□ 3.13
PTCH1-210ENST00000468211 TERF2IPQ9NYB0 399 aa34.59■■■■□ 3.13
PTCH1-210ENST00000468211 CDCA7Q9BWT1 371 aaPredicted RBP34.58■■■■□ 3.13
PTCH1-210ENST00000468211 RGPD3A6NKT7 1758 aaPredicted RBP34.56■■■■□ 3.12
PTCH1-210ENST00000468211 RGPD4Q7Z3J3 1758 aa34.56■■■■□ 3.12
PTCH1-210ENST00000468211 CCDC7Q96M83 1385 aa34.55■■■■□ 3.12
PTCH1-210ENST00000468211 ERBB3P21860 1342 aa34.54■■■■□ 3.12
PTCH1-210ENST00000468211 BCL9O00512 1426 aa34.51■■■■□ 3.12
PTCH1-210ENST00000468211 BCL11BQ9C0K0 894 aaPredicted RBP34.51■■■■□ 3.12
PTCH1-210ENST00000468211 EXOC5O00471 708 aa34.49■■■■□ 3.11
PTCH1-210ENST00000468211 NINLQ9Y2I6 1382 aa34.49■■■■□ 3.11
PTCH1-210ENST00000468211 NBPF14Q5TI25 921 aa34.48■■■■□ 3.11
PTCH1-210ENST00000468211 NLRP2Q9NX02 1062 aa34.48■■■■□ 3.11
PTCH1-210ENST00000468211 TNS2Q63HR2 1409 aa34.47■■■■□ 3.11
PTCH1-210ENST00000468211 PLSCR1O15162 318 aa34.47■■■■□ 3.11
PTCH1-210ENST00000468211 ANKRD24Q8TF21 1146 aa34.47■■■■□ 3.11
PTCH1-210ENST00000468211 USP47Q96K76 1375 aa34.46■■■■□ 3.11
PTCH1-210ENST00000468211 PROM2Q8N271 834 aa34.42■■■■□ 3.1
PTCH1-210ENST00000468211 FBLN1P23142 703 aa34.41■■■■□ 3.1
PTCH1-210ENST00000468211 SLC24A1O60721 1099 aa34.4■■■■□ 3.1
PTCH1-210ENST00000468211 ANO8Q9HCE9 1232 aaPredicted RBP34.4■■■■□ 3.1
PTCH1-210ENST00000468211 ANKRD36BQ8N2N9 1353 aa34.39■■■■□ 3.1
PTCH1-210ENST00000468211 NHSQ6T4R5 1651 aa34.39■■■■□ 3.1
PTCH1-210ENST00000468211 KCNQ2O43526 872 aa34.39■■■■□ 3.1
PTCH1-210ENST00000468211 IL2RBP14784 551 aa34.39■■■■□ 3.1
PTCH1-210ENST00000468211 IP6K1Q92551 441 aa34.39■■■■□ 3.1
PTCH1-210ENST00000468211 RGPD2P0DJD1 1756 aa34.38■■■■□ 3.09
PTCH1-210ENST00000468211 COG3Q96JB2 828 aa34.37■■■■□ 3.09
PTCH1-210ENST00000468211 FAM208AQ9UK61 1670 aaKnown RBP34.37■■■■□ 3.09
PTCH1-210ENST00000468211 TMF1P82094 1093 aa34.36■■■■□ 3.09
PTCH1-210ENST00000468211 MAP3K19Q56UN5 1328 aa34.35■■■■□ 3.09
PTCH1-210ENST00000468211 LTV1Q96GA3 475 aaPredicted RBP34.35■■■■□ 3.09
PTCH1-210ENST00000468211 KAT6BQ8WYB5 2073 aa34.35■■■■□ 3.09
PTCH1-210ENST00000468211 ACSBG1Q96GR2 724 aa34.33■■■■□ 3.09
PTCH1-210ENST00000468211 CASZ1Q86V15 1759 aa34.33■■■■□ 3.09
PTCH1-210ENST00000468211 BTAF1O14981 1849 aa34.31■■■■□ 3.08
PTCH1-210ENST00000468211 HOXC9P31274 260 aa34.3■■■■□ 3.08
PTCH1-210ENST00000468211 TXNRD1Q16881 649 aa34.3■■■■□ 3.08
PTCH1-210ENST00000468211 MYOM1P52179 1685 aa34.29■■■■□ 3.08
PTCH1-210ENST00000468211 FYB1O15117 783 aa34.29■■■■□ 3.08
PTCH1-210ENST00000468211 KIF20BQ96Q89 1820 aa34.28■■■■□ 3.08
PTCH1-210ENST00000468211 PDGFDQ9GZP0 370 aaPredicted RBP34.28■■■■□ 3.08
PTCH1-210ENST00000468211 GGNBP2Q9H3C7 697 aa34.28■■■■□ 3.08
PTCH1-210ENST00000468211 AMPHP49418 695 aa34.26■■■■□ 3.08
PTCH1-210ENST00000468211 SPON1Q9HCB6 807 aa34.26■■■■□ 3.08
PTCH1-210ENST00000468211 PCGF6Q9BYE7 350 aa34.25■■■■□ 3.07
PTCH1-210ENST00000468211 RRS1Q15050 365 aaKnown RBP34.24■■■■□ 3.07
PTCH1-210ENST00000468211 SHANK3Q9BYB0 1731 aa34.23■■■■□ 3.07
PTCH1-210ENST00000468211 DDX54Q8TDD1 881 aaKnown RBP34.2■■■■□ 3.07
PTCH1-210ENST00000468211 TIMELESSQ9UNS1 1208 aa34.2■■■■□ 3.07
PTCH1-210ENST00000468211 CARD14Q9BXL6 1004 aa34.19■■■■□ 3.06
PTCH1-210ENST00000468211 RTL1A6NKG5 1358 aa34.19■■■■□ 3.06
PTCH1-210ENST00000468211 CDCA8Q53HL2 280 aa34.18■■■■□ 3.06
PTCH1-210ENST00000468211 PAPPAQ13219 1627 aa34.18■■■■□ 3.06
PTCH1-210ENST00000468211 MEGF6O75095 1541 aa34.17■■■■□ 3.06
PTCH1-210ENST00000468211 SLC15A2Q16348 729 aa34.17■■■■□ 3.06
PTCH1-210ENST00000468211 CLSPNQ9HAW4 1339 aa34.16■■■■□ 3.06
PTCH1-210ENST00000468211 STK32BQ9NY57 414 aa34.16■■■■□ 3.06
PTCH1-210ENST00000468211 PPP1R1BQ9UD71 204 aaPredicted RBP34.15■■■■□ 3.06
PTCH1-210ENST00000468211 DOT1LQ8TEK3 1739 aa34.15■■■■□ 3.06
PTCH1-210ENST00000468211 ZBTB7AO95365 584 aa34.14■■■■□ 3.06
PTCH1-210ENST00000468211 NBPF6Q5VWK0 638 aa34.14■■■■□ 3.06
PTCH1-210ENST00000468211 NBPF4Q96M43 638 aa34.14■■■■□ 3.06
PTCH1-210ENST00000468211 USHBP1Q8N6Y0 703 aa34.12■■■■□ 3.05
PTCH1-210ENST00000468211 NSD3Q9BZ95 1437 aa34.11■■■■□ 3.05
PTCH1-210ENST00000468211 HSP90AB2PQ58FF8 381 aa34.1■■■■□ 3.05
PTCH1-210ENST00000468211 LRRC4BQ9NT99 713 aa34.1■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms