RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 SBF2Q86WG5 1849 aa29.99■■■□□ 2.39
COL9A3-207ENST00000467819 AXIN2Q9Y2T1 843 aa29.99■■■□□ 2.39
COL9A3-207ENST00000467819 PARD3Q8TEW0 1356 aa29.99■■■□□ 2.39
COL9A3-207ENST00000467819 SBNO2Q9Y2G9 1366 aa29.99■■■□□ 2.39
COL9A3-207ENST00000467819 KCNH5Q8NCM2 988 aa29.98■■■□□ 2.39
COL9A3-207ENST00000467819 NFAT5O94916 1531 aa29.97■■■□□ 2.39
COL9A3-207ENST00000467819 ARHGEF25Q86VW2 580 aa29.97■■■□□ 2.39
COL9A3-207ENST00000467819 TONSLQ96HA7 1378 aa29.97■■■□□ 2.39
COL9A3-207ENST00000467819 WDR17Q8IZU2 1322 aa29.96■■■□□ 2.39
COL9A3-207ENST00000467819 OVOS2A0A0G2JMS6 1433 aa29.96■■■□□ 2.39
COL9A3-207ENST00000467819 OVOS2A0A0J9YW53 1432 aa29.96■■■□□ 2.39
COL9A3-207ENST00000467819 OVOS2Q6IE36 1432 aa29.96■■■□□ 2.39
COL9A3-207ENST00000467819 DDB1Q16531 1140 aa29.93■■■□□ 2.38
COL9A3-207ENST00000467819 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.93■■■□□ 2.38
COL9A3-207ENST00000467819 USP54Q70EL1 1684 aa29.92■■■□□ 2.38
COL9A3-207ENST00000467819 CSB-PGBD3P0DP91 1061 aa29.92■■■□□ 2.38
COL9A3-207ENST00000467819 LTN1O94822 1766 aa29.91■■■□□ 2.38
COL9A3-207ENST00000467819 TMC1Q8TDI8 760 aa29.91■■■□□ 2.38
COL9A3-207ENST00000467819 CD163L1Q9NR16 1453 aa29.91■■■□□ 2.38
COL9A3-207ENST00000467819 C11orf95C9JLR9 678 aaPredicted RBP29.89■■■□□ 2.38
COL9A3-207ENST00000467819 RGPD3A6NKT7 1758 aaPredicted RBP29.87■■■□□ 2.37
COL9A3-207ENST00000467819 RGPD4Q7Z3J3 1758 aa29.87■■■□□ 2.37
COL9A3-207ENST00000467819 ABCC6O95255 1503 aa29.87■■■□□ 2.37
COL9A3-207ENST00000467819 NME9Q86XW9 330 aa29.86■■■□□ 2.37
COL9A3-207ENST00000467819 CARD10Q9BWT7 1032 aa29.86■■■□□ 2.37
COL9A3-207ENST00000467819 NBPF14Q5TI25 921 aa29.85■■■□□ 2.37
COL9A3-207ENST00000467819 HDGFL2Q7Z4V5 671 aaPredicted RBP29.85■■■□□ 2.37
COL9A3-207ENST00000467819 USP31Q70CQ4 1352 aa29.85■■■□□ 2.37
COL9A3-207ENST00000467819 CDCA7Q9BWT1 371 aaPredicted RBP29.84■■■□□ 2.37
COL9A3-207ENST00000467819 SLC12A5Q9H2X9 1139 aa29.84■■■□□ 2.37
COL9A3-207ENST00000467819 MARCH10Q8NA82 808 aaPredicted RBP29.82■■■□□ 2.36
COL9A3-207ENST00000467819 EDC4Q6P2E9 1401 aaKnown RBP29.81■■■□□ 2.36
COL9A3-207ENST00000467819 CCDC7Q96M83 1385 aa29.8■■■□□ 2.36
COL9A3-207ENST00000467819 PTF1AQ7RTS3 328 aa29.8■■■□□ 2.36
COL9A3-207ENST00000467819 A0A1W2PP64 1363 aa29.79■■■□□ 2.36
COL9A3-207ENST00000467819 BCL11BQ9C0K0 894 aaPredicted RBP29.78■■■□□ 2.36
COL9A3-207ENST00000467819 TERF2IPQ9NYB0 399 aa29.78■■■□□ 2.36
COL9A3-207ENST00000467819 EXOC5O00471 708 aa29.76■■■□□ 2.35
COL9A3-207ENST00000467819 PLSCR1O15162 318 aa29.76■■■□□ 2.35
COL9A3-207ENST00000467819 ERBB3P21860 1342 aa29.75■■■□□ 2.35
COL9A3-207ENST00000467819 BCL9O00512 1426 aa29.75■■■□□ 2.35
COL9A3-207ENST00000467819 TNS2Q63HR2 1409 aa29.75■■■□□ 2.35
COL9A3-207ENST00000467819 ST20-MTHFSA0A0A6YYL1 179 aa29.73■■■□□ 2.35
COL9A3-207ENST00000467819 PUS7Q96PZ0 661 aaKnown RBP29.73■■■□□ 2.35
COL9A3-207ENST00000467819 NLRP2Q9NX02 1062 aa29.73■■■□□ 2.35
COL9A3-207ENST00000467819 TESK2Q96S53 571 aa29.72■■■□□ 2.35
COL9A3-207ENST00000467819 KAT6BQ8WYB5 2073 aa29.71■■■□□ 2.35
COL9A3-207ENST00000467819 ANKRD24Q8TF21 1146 aa29.7■■■□□ 2.35
COL9A3-207ENST00000467819 NHSQ6T4R5 1651 aa29.69■■■□□ 2.34
COL9A3-207ENST00000467819 ANO8Q9HCE9 1232 aaPredicted RBP29.69■■■□□ 2.34
COL9A3-207ENST00000467819 NINLQ9Y2I6 1382 aa29.68■■■□□ 2.34
COL9A3-207ENST00000467819 TRIM26Q12899 539 aaPredicted RBP29.68■■■□□ 2.34
COL9A3-207ENST00000467819 CASZ1Q86V15 1759 aa29.67■■■□□ 2.34
COL9A3-207ENST00000467819 FAM208AQ9UK61 1670 aaKnown RBP29.66■■■□□ 2.34
COL9A3-207ENST00000467819 PROM2Q8N271 834 aa29.65■■■□□ 2.34
COL9A3-207ENST00000467819 SPON1Q9HCB6 807 aa29.65■■■□□ 2.34
COL9A3-207ENST00000467819 IL2RBP14784 551 aa29.64■■■□□ 2.34
COL9A3-207ENST00000467819 KCNQ2O43526 872 aa29.63■■■□□ 2.33
COL9A3-207ENST00000467819 ACSBG1Q96GR2 724 aa29.63■■■□□ 2.33
COL9A3-207ENST00000467819 PPP1R1BQ9UD71 204 aaPredicted RBP29.62■■■□□ 2.33
COL9A3-207ENST00000467819 BTAF1O14981 1849 aa29.61■■■□□ 2.33
COL9A3-207ENST00000467819 TXNRD1Q16881 649 aa29.61■■■□□ 2.33
COL9A3-207ENST00000467819 RGPD2P0DJD1 1756 aa29.6■■■□□ 2.33
COL9A3-207ENST00000467819 SLC24A1O60721 1099 aa29.6■■■□□ 2.33
COL9A3-207ENST00000467819 IP6K1Q92551 441 aa29.6■■■□□ 2.33
COL9A3-207ENST00000467819 LTV1Q96GA3 475 aaPredicted RBP29.6■■■□□ 2.33
COL9A3-207ENST00000467819 COG3Q96JB2 828 aa29.6■■■□□ 2.33
COL9A3-207ENST00000467819 ANKRD36BQ8N2N9 1353 aa29.58■■■□□ 2.33
COL9A3-207ENST00000467819 USP47Q96K76 1375 aa29.58■■■□□ 2.33
COL9A3-207ENST00000467819 PDGFDQ9GZP0 370 aaPredicted RBP29.57■■■□□ 2.32
COL9A3-207ENST00000467819 MAP3K19Q56UN5 1328 aa29.56■■■□□ 2.32
COL9A3-207ENST00000467819 FBLN1P23142 703 aa29.55■■■□□ 2.32
COL9A3-207ENST00000467819 STK32BQ9NY57 414 aa29.55■■■□□ 2.32
COL9A3-207ENST00000467819 TMF1P82094 1093 aa29.54■■■□□ 2.32
COL9A3-207ENST00000467819 KIF20BQ96Q89 1820 aa29.53■■■□□ 2.32
COL9A3-207ENST00000467819 AMPHP49418 695 aa29.53■■■□□ 2.32
COL9A3-207ENST00000467819 HOXC9P31274 260 aa29.52■■■□□ 2.32
COL9A3-207ENST00000467819 ZBTB7AO95365 584 aa29.51■■■□□ 2.31
COL9A3-207ENST00000467819 MYOM1P52179 1685 aa29.5■■■□□ 2.31
COL9A3-207ENST00000467819 SLC15A2Q16348 729 aa29.5■■■□□ 2.31
COL9A3-207ENST00000467819 DDX54Q8TDD1 881 aaKnown RBP29.49■■■□□ 2.31
COL9A3-207ENST00000467819 PAPPAQ13219 1627 aa29.49■■■□□ 2.31
COL9A3-207ENST00000467819 SHANK3Q9BYB0 1731 aa29.48■■■□□ 2.31
COL9A3-207ENST00000467819 GGNBP2Q9H3C7 697 aa29.48■■■□□ 2.31
COL9A3-207ENST00000467819 DOT1LQ8TEK3 1739 aa29.48■■■□□ 2.31
COL9A3-207ENST00000467819 RRS1Q15050 365 aaKnown RBP29.46■■■□□ 2.31
COL9A3-207ENST00000467819 ATF5Q9Y2D1 282 aaPredicted RBP29.46■■■□□ 2.31
COL9A3-207ENST00000467819 RTL1A6NKG5 1358 aa29.45■■■□□ 2.31
COL9A3-207ENST00000467819 FYB1O15117 783 aa29.45■■■□□ 2.31
COL9A3-207ENST00000467819 MEGF6O75095 1541 aa29.42■■■□□ 2.3
COL9A3-207ENST00000467819 PTGER2P43116 358 aa29.41■■■□□ 2.3
COL9A3-207ENST00000467819 CDCA8Q53HL2 280 aa29.41■■■□□ 2.3
COL9A3-207ENST00000467819 DCAF8L1A6NGE4 600 aa29.38■■■□□ 2.29
COL9A3-207ENST00000467819 USHBP1Q8N6Y0 703 aa29.38■■■□□ 2.29
COL9A3-207ENST00000467819 ZCRB1Q8TBF4 217 aaKnown RBP29.38■■■□□ 2.29
COL9A3-207ENST00000467819 SYTL4Q96C24 671 aaPredicted RBP29.38■■■□□ 2.29
COL9A3-207ENST00000467819 LRRC4BQ9NT99 713 aa29.38■■■□□ 2.29
COL9A3-207ENST00000467819 SMG6Q86US8 1419 aaKnown RBP29.37■■■□□ 2.29
COL9A3-207ENST00000467819 MTFR1LQ9H019 292 aa29.37■■■□□ 2.29
COL9A3-207ENST00000467819 ZNF827Q17R98 1081 aa29.36■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms