RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 HMGB2P26583 209 aaKnown RBP10.42□□□□□ -0.74
HPS4-209ENST00000466781 ATP2B2Q01814 1243 aa10.42□□□□□ -0.74
HPS4-209ENST00000466781 CNNM1Q9NRU3 951 aa10.42□□□□□ -0.74
HPS4-209ENST00000466781 CALRP27797 417 aaKnown RBP10.42□□□□□ -0.74
HPS4-209ENST00000466781 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.42□□□□□ -0.74
HPS4-209ENST00000466781 ABCC5O15440 1437 aa10.42□□□□□ -0.74
HPS4-209ENST00000466781 NUCB2P80303 420 aa10.42□□□□□ -0.74
HPS4-209ENST00000466781 CCDC30Q5VVM6 783 aa10.42□□□□□ -0.74
HPS4-209ENST00000466781 ATAD2Q6PL18 1390 aa10.42□□□□□ -0.74
HPS4-209ENST00000466781 PLCH2O75038 1416 aa10.42□□□□□ -0.74
HPS4-209ENST00000466781 HSP90AA2PQ14568 343 aaPredicted RBP10.41□□□□□ -0.74
HPS4-209ENST00000466781 IFT57Q9NWB7 429 aa10.41□□□□□ -0.74
HPS4-209ENST00000466781 DCTN1Q14203 1278 aa10.41□□□□□ -0.74
HPS4-209ENST00000466781 ZNF518AQ6AHZ1 1483 aa10.41□□□□□ -0.74
HPS4-209ENST00000466781 RBM5P52756 815 aaKnown RBP eCLIP10.41□□□□□ -0.74
HPS4-209ENST00000466781 AMOTL2Q9Y2J4 779 aa10.41□□□□□ -0.74
HPS4-209ENST00000466781 SMARCE1Q969G3 411 aa10.41□□□□□ -0.74
HPS4-209ENST00000466781 DHX29Q7Z478 1369 aaKnown RBP10.41□□□□□ -0.74
HPS4-209ENST00000466781 WDR97A6NE52 1622 aa10.4□□□□□ -0.74
HPS4-209ENST00000466781 HIP1O00291 1037 aa10.4□□□□□ -0.74
HPS4-209ENST00000466781 CCDC158Q5M9N0 1113 aa10.4□□□□□ -0.74
HPS4-209ENST00000466781 NUDT16Q96DE0 195 aaKnown RBP10.4□□□□□ -0.74
HPS4-209ENST00000466781 KCNH5Q8NCM2 988 aa10.4□□□□□ -0.74
HPS4-209ENST00000466781 ATP10BO94823 1461 aa10.4□□□□□ -0.74
HPS4-209ENST00000466781 MPHOSPH10O00566 681 aaKnown RBP10.4□□□□□ -0.74
HPS4-209ENST00000466781 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.4□□□□□ -0.74
HPS4-209ENST00000466781 ADAMTS2O95450 1211 aa10.4□□□□□ -0.74
HPS4-209ENST00000466781 FILIP1LQ4L180 1135 aa10.4□□□□□ -0.74
HPS4-209ENST00000466781 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.4□□□□□ -0.741e-6■■□□□ 12.5
HPS4-209ENST00000466781 CHMP5Q9NZZ3 219 aa10.4□□□□□ -0.74
HPS4-209ENST00000466781 CNTLNQ9NXG0 1405 aa10.4□□□□□ -0.75
HPS4-209ENST00000466781 HSP90B2PQ58FF3 399 aa10.4□□□□□ -0.75
HPS4-209ENST00000466781 CDC45O75419 566 aa10.39□□□□□ -0.75
HPS4-209ENST00000466781 TTLL5Q6EMB2 1281 aa10.39□□□□□ -0.75
HPS4-209ENST00000466781 UGGT2Q9NYU1 1516 aa10.39□□□□□ -0.75
HPS4-209ENST00000466781 MTHFSP49914 203 aa10.39□□□□□ -0.75
HPS4-209ENST00000466781 MSH6P52701 1360 aa10.39□□□□□ -0.75
HPS4-209ENST00000466781 KDM5BQ9UGL1 1544 aa10.39□□□□□ -0.75
HPS4-209ENST00000466781 ZRSR2Q15696 482 aaKnown RBP10.39□□□□□ -0.75
HPS4-209ENST00000466781 ERC1Q8IUD2 1116 aa10.39□□□□□ -0.75
HPS4-209ENST00000466781 CLASRPQ8N2M8 674 aaKnown RBP10.39□□□□□ -0.75
HPS4-209ENST00000466781 ERCC4Q92889 916 aaPredicted RBP10.39□□□□□ -0.75
HPS4-209ENST00000466781 PDCL3Q9H2J4 239 aa10.38□□□□□ -0.75
HPS4-209ENST00000466781 TOM1O60784 492 aa10.38□□□□□ -0.75
HPS4-209ENST00000466781 SDF4Q9BRK5 362 aa10.38□□□□□ -0.75
HPS4-209ENST00000466781 LNPKQ9C0E8 428 aa10.38□□□□□ -0.75
HPS4-209ENST00000466781 MAP3K1Q13233 1512 aa10.38□□□□□ -0.75
HPS4-209ENST00000466781 DUOX2Q9NRD8 1548 aa10.38□□□□□ -0.75
HPS4-209ENST00000466781 ZC3H6P61129 1189 aaKnown RBP10.38□□□□□ -0.75
HPS4-209ENST00000466781 NOM1Q5C9Z4 860 aaKnown RBP10.38□□□□□ -0.75
HPS4-209ENST00000466781 UBAP1LF5GYI3 381 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 PIP4K2AP48426 406 aaPredicted RBP10.37□□□□□ -0.75
HPS4-209ENST00000466781 WAPLQ7Z5K2 1190 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 ZBED9Q6R2W3 1325 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 GNAI3P08754 354 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 ATP2B1P20020 1258 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 NGLY1Q96IV0 654 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 SYCP2Q9BX26 1530 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 GSE1Q14687 1217 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 MAP7D2Q96T17 732 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 RSPH6AQ9H0K4 717 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 A2MP01023 1474 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 SKIDA1Q1XH10 827 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 ANKRD18AQ8IVF6 992 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 SLC12A5Q9H2X9 1139 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 ZNF396Q96N95 335 aaPredicted RBP10.37□□□□□ -0.75
HPS4-209ENST00000466781 ABCC2Q92887 1545 aa10.37□□□□□ -0.75
HPS4-209ENST00000466781 SMC2O95347 1197 aa10.36□□□□□ -0.75
HPS4-209ENST00000466781 ZNF530Q6P9A1 599 aaPredicted RBP10.36□□□□□ -0.75
HPS4-209ENST00000466781 CCDC191Q8NCU4 936 aa10.36□□□□□ -0.75
HPS4-209ENST00000466781 PNISRQ8TF01 805 aaKnown RBP10.36□□□□□ -0.75
HPS4-209ENST00000466781 ADAMTS8Q9UP79 889 aa10.36□□□□□ -0.75
HPS4-209ENST00000466781 LETM1O95202 739 aaPredicted RBP10.36□□□□□ -0.75
HPS4-209ENST00000466781 RRS1Q15050 365 aaKnown RBP10.36□□□□□ -0.75
HPS4-209ENST00000466781 SOGA3Q5TF21 947 aa10.36□□□□□ -0.75
HPS4-209ENST00000466781 ERLIN2O94905 339 aa10.36□□□□□ -0.75
HPS4-209ENST00000466781 NEFHP12036 1026 aa10.36□□□□□ -0.75
HPS4-209ENST00000466781 MATR3P43243 847 aaKnown RBP eCLIP10.36□□□□□ -0.75
HPS4-209ENST00000466781 NACAP1Q9BZK3 213 aa10.36□□□□□ -0.75
HPS4-209ENST00000466781 CCDC69A6NI79 296 aa10.36□□□□□ -0.75
HPS4-209ENST00000466781 SURF6O75683 361 aaKnown RBP10.36□□□□□ -0.75
HPS4-209ENST00000466781 PHF8Q9UPP1 1060 aa10.36□□□□□ -0.75
HPS4-209ENST00000466781 NEBLO76041 1014 aa10.35□□□□□ -0.75
HPS4-209ENST00000466781 DESP17661 470 aa10.35□□□□□ -0.75
HPS4-209ENST00000466781 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.35□□□□□ -0.75
HPS4-209ENST00000466781 PANK1Q8TE04 598 aa10.35□□□□□ -0.75
HPS4-209ENST00000466781 ZHX3Q9H4I2 956 aa10.35□□□□□ -0.75
HPS4-209ENST00000466781 BRPF1P55201 1214 aaPredicted RBP10.35□□□□□ -0.75
HPS4-209ENST00000466781 CCP110O43303 1012 aa10.35□□□□□ -0.75
HPS4-209ENST00000466781 KINO60870 393 aaKnown RBP10.35□□□□□ -0.75
HPS4-209ENST00000466781 PPP2R1AP30153 589 aa10.35□□□□□ -0.75
HPS4-209ENST00000466781 PRKAR2BP31323 418 aa10.35□□□□□ -0.75
HPS4-209ENST00000466781 C22orf23Q9BZE7 217 aa10.35□□□□□ -0.75
HPS4-209ENST00000466781 NBPF8Q3BBV2 869 aa10.35□□□□□ -0.75
HPS4-209ENST00000466781 KRT28Q7Z3Y7 464 aa10.34□□□□□ -0.75
HPS4-209ENST00000466781 STK11IPQ8N1F8 1099 aa10.34□□□□□ -0.75
HPS4-209ENST00000466781 AAMPQ13685 434 aa10.34□□□□□ -0.75
HPS4-209ENST00000466781 SEPT7Q16181 437 aaKnown RBP10.34□□□□□ -0.75
HPS4-209ENST00000466781 GPATCH8Q9UKJ3 1502 aaKnown RBP10.34□□□□□ -0.75
HPS4-209ENST00000466781 STIM1Q13586 685 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 140.8 ms